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https://vivli.org/

Independent, non-profit organization that has developed global data-sharing and analytics platform to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through creation and implementation of sustainable global data-sharing enterprise. Our focus is on sharing individual participant-level data from completed clinical trials. Users can search listed studies, request data sets from data contributors, aggregate data, or share data of their own. Vivli (Center for Clinical Research Data) is launching a portal to share participant-level data from COVID trials.

Proper citation: Vivli (RRID:SCR_018080) Copy   

•   Source: SciCrunch Registry

http://ultrascan.aucsolutions.com/

Software package for hydrodynamic data from analytical ultracentrifugation experiments. Features integrated data editing and analysis environment with portable graphical user interface. Provides resolution for sedimentation velocity experiments using high-performance computing modules for 2-dimensional spectrum analysis, genetic algorithm, and for Monte Carlo analysis.

Proper citation: UltraScan (RRID:SCR_018126) Copy   

•   Source: SciCrunch Registry

https://clipseq.usegalaxy.eu/

Webserver to process, analyse and visualise CLIP-Seq data. Software tools to process and visualise RNA protein interactions. CLIP-Seq data analysis in Galaxy. Galaxy CLIP-Explorer can process large CLIP-Seq data of eCLIP, iCLIP, and with simple changes to iCLIP workflows also FLASH, and uvCLAP.

Proper citation: CLIP-Explorer (RRID:SCR_018128) Copy   

•   Source: SciCrunch Registry

http://www.imperial.ac.uk/research/animallectins

Resource presents information about animal lectins involved in various sugar recognition processes.

Proper citation: genomics resource for animal lectins (RRID:SCR_018122) Copy   

•   Source: SciCrunch Registry

http://blog.schema.org/2020/03/schema-for-coronavirus-special.html

Portal includes vocabulary to assist global response to Coronavirus outbreak. Creates, maintains, and promotes schemas for structured data.

Proper citation: Schema.org (RRID:SCR_018291) Copy   

•   Source: SciCrunch Registry

https://www.hdruk.ac.uk/covid-19/

Initiative to mobilize talent and partnerships across United Kingdom to coordinate and connect national data science driven research efforts related to COVID-19 to address wider impact of COVID-19 pandemic.National Institute for Health Data Science for England, Wales, Scotland and Northern Ireland, is championing use of health data to respond to COVID-19.

Proper citation: Health Data Research UK COVID-19 Initiative (RRID:SCR_018335) Copy   

•   Source: SciCrunch Registry

http://gepia.cancer-pku.cn

Web server for cancer and normal gene expression profiling and interactive analyses. Interactive web server for analyzing RNA sequencing expression data of tumors and normal samples from TCGA and GTEx projects, using standard processing pipeline. Provides customizable functions such as tumor or normal differential expression analysis, profiling according to cancer types or pathological stages, patient survival analysis, similar gene detection, correlation analysis and dimensionality reduction analysis.

Proper citation: Gene Expression Profiling Interactive Analysis (RRID:SCR_018294) Copy   

•   Source: SciCrunch Registry

https://health.uconn.edu/worm-lab/track-a-worm/

Open source system for quantitative assessment of C. Elegans locomotory and bending behavior. Used for quantitative behavioral analyses to understand circuit and gene bases of behavior. Constantly records and analyzes position and body shape of freely moving worm at high magnification.

Proper citation: Track-A-Worm (RRID:SCR_018299) Copy   

•   Source: SciCrunch Registry

https://bioportal.bioontology.org/ontologies/PCL/

Collection of ontology of provisional cells determined by experimental methods.

Proper citation: Provisional Cell Ontology (RRID:SCR_018332) Copy   

•   Source: SciCrunch Registry

https://huygens.science.uva.nl/PlotTwist/

Web application for plotting and annotating continuous data. Open source web app for plotting and annotating time series data. Used to inspect data and generate publication quality visualizations. Available options for plotting include lineplot, small multiples and heatmap, summary statistics and inferential statistics.

Proper citation: PlotTwist (RRID:SCR_018331) Copy   

•   Source: SciCrunch Registry

https://github.com/BackofenLab/CRISPRcasIdentifier

Software tool providing machine learning approach for identification and classification of CRISPR-Cas systems. Combines regression and classification approaches for improving quality of input protein cassettes and predicting their subtypes.

Proper citation: CRISPRcasIdentifier (RRID:SCR_018296) Copy   

•   Source: SciCrunch Registry

https://github.com/timbitz/Whippet.jl

Software tool for analysis of Alternative Splicing events and calculation of weighted transcripts per million values TPM on gene level. RNA-seq analysis method that quantifies AS events of any complexity without loss of accuracy. Used for accurate profiling AS to find misregulation present in human diseases.

Proper citation: Whippet (RRID:SCR_018349) Copy   

•   Source: SciCrunch Registry

https://cord-19.apps.allenai.org/

Software tool as full text search engine for COVID-19 Open Research Dataset. Used to explore dataset and identify potential research efforts.

Proper citation: CORD-19 Explorer (RRID:SCR_018341) Copy   

•   Source: SciCrunch Registry

https://crowdfightcovid19.org/

Initiative from scientific community to put all available resources including highly skilled scientists at service of fight against COVID-19.

Proper citation: Crowdfight COVID-19 (RRID:SCR_018340) Copy   

•   Source: SciCrunch Registry

http://fold.weizmann.ac.il/fldbin/findex

Web tool to predict whether given protein sequence is intrinsically unfolded. Algorithm for predicting ordered and disordered regions in protein based on its primary structure amino acid sequence. Graphic web server to predict if given protein sequence is intrinsically unfolded implementing algorithm of Uversky and co-workers, which is based on average residue hydrophobicity and net charge of sequence.

Proper citation: FoldIndex (RRID:SCR_018390) Copy   

•   Source: SciCrunch Registry

https://femtonics.eu/products/

Software package for measurement control and analysis by Femtonics Ltd. Designed in MATLAB and used in field of cellular and network imaging. New version offers new scanning features and improved overall usability.

Proper citation: Measurement Control And Data Analysis Software (RRID:SCR_018309) Copy   

•   Source: SciCrunch Registry

https://jupyter.org/

Open source web application to create and share documents that contain live code, equations, visualizations and narrative text. Used for data cleaning and transformation, numerical simulation, statistical modeling, data visualization, machine learning.

Proper citation: Jupyter Notebook (RRID:SCR_018315) Copy   

•   Source: SciCrunch Registry

http://xray.bmc.uu.se/~alwyn/TAJ/Home.html

Software for visualization of macromolecular structures, atomic coordinates, and 3D intensity maps, and for building macromolecular structures.

Proper citation: O (RRID:SCR_018394) Copy   

•   Source: SciCrunch Registry

https://covid19.figshare.com/

Portal to discover COVID-19 open research data on Figshare. Figshare collection of COVID-19 related research data.

Proper citation: COVID-19 research data on Figshare (RRID:SCR_018277) Copy   

•   Source: SciCrunch Registry

https://www.becker-hickl.com/products/spcm/

Software tool as instrument software for SPC- and DPC Modules by Becker and Hickl GmbH.

Proper citation: SPCM (RRID:SCR_018310) Copy   

•   Source: SciCrunch Registry