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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Waxholm Space Atlas of the Sprague Dawley Rat Brain Resource Report Resource Website 10+ mentions |
Waxholm Space Atlas of the Sprague Dawley Rat Brain (RRID:SCR_017124) | WHS-SD-atlas | data or information resource, waxholm atlas, atlas | Open access volumetric atlas of anatomical delineations of rat brain based on structural contrast in isotropic magnetic resonance and diffusion tensor images acquired ex vivo from 80 day old male Sprague Dawley rat at Duke Center for In Vivo Microscopy. Spatial reference is provided by Waxholm Space coordinate system. Location of bregma and lambda are identified as anchors towards stereotaxic space. Application areas include localization of signal in non structural images. Atlas, MRI and DTI volumes, and diffusion tensor data are shared in NIfTI format. | volumetric, atlas, anatomical, delineation, rat, brain, structural, contrast, isotropic, MIR, DTI, male, Sprague Dawley, image |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: ITK-SNAP is related to: PMOD Software is related to: Duke University; North Carolina; USA has parent organization: University of Oslo; Oslo; Norway works with: MeshView works with: VisuAlign |
Research Council of Norway ; EC Human Brain Project ; NIBIB P41 EB015897; NCI U24 CA092656 |
PMID:24726336 PMID:25585022 |
Free, Available for download, Freely available | SCR_017124 | WHS SD rat atlas, WHS_SD_rat_atlas, WHS-SD-rat-atlas | 2026-07-28 09:44:27 | 35 | ||||||
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Biomedical Simulations Resource Resource Report Resource Website 1+ mentions |
Biomedical Simulations Resource (RRID:SCR_001952) | BMSR | biomedical technology resource center, training resource | Biomedical technology resource center dedicated to the advancement of the state-of-the-art in biomedical modeling and simulation through Core and Collaborative Research projects, as well as the dissemination of this knowledge and related software through Service, Training and Dissemination activities aimed at the biomedical community at large. The BMSR includes four core research projects: * Pharmacokinetic/Pharmacodynamic Systems Analysis * Nonlinear Modeling of Complex Biomedical Systems * Modeling of Autonomic, Metabolic and Vascular Control Interactions * Nonlinear Modeling of the Hippocampus Fifteen Collaborative Research Projects serve as challenging test grounds for the Resource's methodologies and expertise. | hippocampus, modeling, simulation, model, pharmacokinetic, pharmacodynamic, systems analysis, nonlinear modeling, complex biomedical system, autonomic, metabolic, vascular control, interaction, intracellular signalling, biomarker |
has parent organization: University of Southern California; Los Angeles; USA is parent organization of: BMSR Workshops is parent organization of: BMSR Short Courses is parent organization of: LYSIS is parent organization of: PNEUMA is parent organization of: TARGETgene is parent organization of: EONS is parent organization of: ADAPT |
Cancer, Alzheimer's disease, Metabolic syndrome | NIBIB P41-EB001978 | nif-0000-10530 | http://bmsr.usc.edu/index.html | SCR_001952 | Biomedical Simulations Resource (BMSR) | 2026-07-28 09:40:18 | 8 | |||||
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UCSD Center for NMR Spectroscopy and Imaging of Proteins Resource Report Resource Website |
UCSD Center for NMR Spectroscopy and Imaging of Proteins (RRID:SCR_001401) | NMR Resource at UCSD | training resource, service resource, biomedical technology research center, access service resource | Biomedical technology research center that develops new technology for NMR spectroscopy and makes it available to the biomedical research community for structure determination of proteins in biological supramolecular assemblies, such as membrane proteins or virus particles. The principal applications are to membrane-associated proteins; however, the approach is generally applicable to polypeptides that cannot be prepared in forms suitable for X-ray crystallography or multidimensional solution NMR spectroscopy. As a result, there are also applications to viruses and other biological systems. The principal instrumentation consists of high-field NMR spectrometers dedicated to high-resolution solid-state NMR spectroscopy. The spectrometers are capable of the full-range of multiple-resonance experiments on stationary and spinning samples; however, the major emphasis is on methods that utilize mechanically or magnetically oriented samples. Development encompasses preparation of samples, including: * Expression and purification of membrane proteins * Design and construction of instrumentation, especially probes * Implementation of new pulse sequences and other experimental protocols for solid-state NMR spectroscopy * Calculations for the processing of experimental data and protein structure determination from the orientational constraints derived from these data | nmr spectroscopy, structure, protein, nmr spectrometer, expression, purification, membrane protein, probe, pulse sequence, virus particle | has parent organization: University of California at San Diego; California; USA | NIBIB P41EB002031 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152626 | SCR_001401 | Center for NMR Spectroscopy and Imaging of Proteins, Resource for NMR Molecular Imaging of Proteins | 2026-07-28 09:40:11 | 0 | ||||||
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Richard M. Lucas Center for Imaging Resource Report Resource Website 1+ mentions |
Richard M. Lucas Center for Imaging (RRID:SCR_001406) | Lucas Center, CAMRT | training resource, biomedical technology research center | Biomedical technology research center that develops innovative technologies in five core research areas of magnetic resonance imaging and spectroscopy (MRI/MRS): # image reconstruction, fast imaging and radiofrequency (RF) pulse design methods, # R hardware development, # body imaging methods, # neuroimaging methods. # MR spectroscopy methods. In each of these areas, they capitalize on the long-standing, successful partnership and extensive experience in Stanford's Radiology and Electrical Engineering departments to improve and expand imaging technology for use in basic research and clinical care, and to provide cutting edge opportunities to the extramural community for biomedical research with MRI. Over its more than 18 years of existence, CAMRT has been motivated by and has served a wide base of extramurally sponsored collaborators and service users from leading medical and research institutions. Examples of collaborative projects are the development of real-time functional MRI biofeedback methods for neuroscience and clinical applications such as pain remediation, development of methods to mitigate metal artifacts in musculoskeletal imaging, development of novel RF pulses for many applications, and studies of breast cancer with efficient MRS methods. | magnetic resonance imaging, spectroscopy, x-ray imaging, ct imaging, imaging, neuroimaging | has parent organization: Stanford University School of Medicine; California; USA | Brain disorder, Cancer, Stroke, Heart disease | NIBIB | Free, Freely Available | nlx_152629 | http://med.stanford.edu/rsl/about/lucas.html | SCR_001406 | Lucas Center for Imaging, Center for Advanced Magnetic Resonance Technology | 2026-07-28 09:40:11 | 1 | ||||
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Center for Functional Neuroimaging Technologies Resource Report Resource Website 1+ mentions |
Center for Functional Neuroimaging Technologies (RRID:SCR_001423) | CFNT | training resource, service resource, biomedical technology research center, access service resource | Biomedical technology research center that develops and applies innovative neuroimaging technologies and techniques to enable closer examination of the human brain, and thereby contribute to better understanding of the brain in health and disease. They develop new techniques and advance existing technologies for acquisition and analysis of functionally specific images of the working brain, with unprecedented physiological precision and spatiotemporal resolution. The research and development aims to improve and extend existing methods for non-invasive magnetic resonance image analysis and acquisition, electromagnetic source imaging, optical neuroimaging, and most recently, combined MR-PET neuroimaging. The Resource provides an essential interactive environment, within which an interdisciplinary team of highly skilled scientists, engineers, and clinicians with diverse expertise in multiple modalities and disciplines. The resource supports service use of the Center's facilities by neuroscientists throughout the country, provide extensive training opportunities for students, fellows, and staff scientists, and seek to advance the field of brain mapping through active dissemination of new knowledge and technology. | mri, neuroimaging, pet, acquisition, analysis, brain, electromagnetic source imaging, optical neuroimaging, multimodal, magnetic resonance, eeg, meg, electrocorticography, information resource, optical imaging |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Harvard Medical School; Massachusetts; USA |
NIBIB 5P41EB015896-18 | Free, Available for download, Freely available | nlx_152644 | http://www.nitrc.org/projects/cfnt | SCR_001423 | 2026-07-28 09:40:11 | 1 | ||||||
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Southwestern NMR Center for In Vivo Metabolism Resource Report Resource Website 1+ mentions |
Southwestern NMR Center for In Vivo Metabolism (RRID:SCR_001429) | Southwestern NMR Center | training resource, biomedical technology research center | Biomedical technology research center that develops and applies new methods for analysis of metabolic networks in intact tissues, animals and human patients. The importance of understanding abnormal metabolism in common diseases such as cancer, diabetes and heart disease has long been appreciated. Because of constraints in technology, however, much of this research has been conducted in isolated systems where clinical relevance may be uncertain. Progress in magnetic resonance technology provides a foundation for major advances towards new ways of imaging metabolism in patients. These new techniques offer the advantage of imaging biochemical pathways without radiation. The focus of this Resource is to bring these technologies to a level where clinical research is feasible through the development of new MR contrast agents, NMR spectroscopy at high fields, and imaging of hyperpolarized 13C. | metabolic network, tissue, imaging, metabolism, nuclear magnetic resonance, magnetic resonance, nuclear magnetic resonance spectroscopy | has parent organization: University of Texas Southwestern Medical Center; Texas; USA | Cancer, Diabetes, Heart disease | NIBIB 5P41EB015908-28 | Free, Freely Available | nlx_152653 | SCR_001429 | Southwestern NMR Center for in vivo Metabolism - NIBIB | 2026-07-28 09:40:11 | 1 | |||||
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MIT/ Harvard Center for Magnetic Resonance Resource Report Resource Website |
MIT/ Harvard Center for Magnetic Resonance (RRID:SCR_001412) | CMR | training resource, service resource, biomedical technology research center, access service resource | Biomedical technology research center designated as a biotechnology nuclear magnetic resonance (NMR) resource that hosts research efforts into cancer, neurological diseases, and many other areas. The heart of the 900 MHz magnetic resonance instrument is a superconducting magnet with a field strength of 21 Tesla, the highest field currently available for magnetic resonance spectroscopy, roughly 400,000 times stronger than the earth's magnetic field. Magnetic resonance is a powerful tool for determining the structure of molecules, and has proven especially useful for elucidating the role of proteins in biological processes and diseases. The state of the art facility includes two 17.6 T magnets with a third to be delivered in 2000. With multiple 17.6 T NMR magnets, the CMR is a valuable resource in New England and will continue to serve this research community for years to come. The advent of high magnetic fields has placed demands on the hardware needed to run experiments in these very high fields. The CMR has recently produced new advances in NMR probe technology, in electron magnetic resonance, and in using microwaves to enhance NMR experiments. The results are powerful new methods for performing biological research and they are looking forward to the continued growth of these exciting new areas! | magnet, spectrometer, nuclear magnetic resonance, magnetic resonance spectrometer | has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; | NIBIB 5P41EB002026-41 | nlx_152635 | SCR_001412 | MIT/ Harvard Center for Magnetic Resonance 900 MHz NMR Facility, MIT/ Harvard Center for Magnetic Resonance (CMR) 900 MHz NMR Facility, MIT/Harvard Center for Magnetic Resonance | 2026-07-28 09:40:11 | 0 | |||||||
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National Resource for Imaging Mass Spectrometry Resource Report Resource Website 1+ mentions |
National Resource for Imaging Mass Spectrometry (RRID:SCR_001416) | NRIMS | training resource, biomedical technology research center | Biomedical technology research center with the focus on the application to biomedical research of a new generation of secondary ion mass spectrometer (SIMS), the Multi-Isotope Imaging Mass Spectrometer (MIMS). MIMS is an ion microscope and an ion counter. MIMS provides high mass separation at high transmission (M/lambdaM > 10,000), high spatial resolution (< 40 nm) and has the unique capability of simultaneously recording several atomic mass images. Of the utmost importance, MIMS makes it possible for the first time (and at the intracellular level) to simultaneously image the distribution and measure the accumulation of molecules labeled with any isotopes, in particular with stable isotopes, for example with 15N. Thus, MIMS allows one to study localization, accumulation and turnover of proteins, fats, sugars and foreign molecules in cellular microdomains, donor-receiver cellular trafficking, stem cell nesting and localization of drugs. Their aim is to be a technological, methodological, and intellectual resource for researchers from a variety of disciplines. They seek to explore and develop the unique capabilities of MIMS and to bring cutting-edge information to biology and medicine that is currently unobtainable using existing technologies. | mass spectrometer, mass spectrometery, ion microscope, ion counter, imaging, ion, molecule | has parent organization: Harvard Medical School; Massachusetts; USA | NIBIB P41 EB001974-13 | nlx_152638 | SCR_001416 | 2026-07-28 09:40:11 | 7 | ||||||||
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National Resource for Quantitative Functional MRI Resource Report Resource Website 1+ mentions |
National Resource for Quantitative Functional MRI (RRID:SCR_006716) | Resource for Quantitative Functional MRI | training resource, biomedical technology research center | Biomedical technology research center that provides expertise for the design of quantitative magnetic resonance imaging (MRI) and spectroscopy (MRS) data acquisition and processing technologies that facilitate the biomedical research of a large community of clinicians and neuroscientists in Maryland and throughout the USA. These methods allow noninvasive assessment of changes in brain anatomy as well as in tissue metabolite levels, physiology, and brain functioning while the brain is changing size during early development and during neurodegeneration, i.e. the changing brain throughout the life span. The Kirby Center has 3 Tesla and 7 Tesla state of the art scanners equipped with parallel imaging (8, 16, and 32-channel receive coils) and multi-transmit capabilities. CIS has an IBM supercomputer that is part of a national supercomputing infrastructure. Resources fall into the following categories: * MRI facilities, image acquisition, and processing * Computing facilities and image analysis * Novel statistical methods for functional brain imaging * Translating laboratory discoveries to patient treatment | quantitative magnetic resonance imaging, magnetic resonance spectroscopy, mri, fmri, function, metabolism, physiology, brain, neurodevelopment, neurodegeneration, image acquisition, image processing, computing, image analysis, statistical method, neuroimaging, development |
has parent organization: Kennedy Krieger Institute has parent organization: Johns Hopkins University; Maryland; USA |
NIBIB P41 EB015909; NCRR P41 RR015241 |
nlx_152634 | http://mri.kennedykrieger.org/nationalresource/index.html | SCR_006716 | Resource for Quantitative Functional Magnetic Resonance Imaging | 2026-07-28 09:41:41 | 1 | ||||||
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DICOMConvert Resource Report Resource Website |
DICOMConvert (RRID:SCR_014100) | software application, standalone software, software resource | A DICOM image converter based on the ITK IO mechanism for reading and writing images. The formats currently supported by the converter are DICOM to: Analyze (*.hdr); MetaImage (*.mhd); Nrrd (*.nhdr, *.nrrd). | standalone software, dicom, image converter |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: National Institutes of Health |
Center for Infectious Disease Imaging ; NIAID ; NIBIB |
Available for download | SCR_014100 | Dicom Converter | 2026-07-28 09:43:24 | 0 | ||||||||
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MOCA Resource Report Resource Website 1+ mentions |
MOCA (RRID:SCR_015524) | software toolkit, software resource | Collection of software tools for the computational analysis of brain anatomy with MRI data. It includes automated software tools from surface reconstruction to their mapping via metric optimization in the Laplace-Beltrami embedding space. It is general and can be applied to a wide range of anatomical structures including cortical, sub-cortical, and fiber bundle surfaces. | computational analysis, brain anatomy, mri data, laplace-beltrami embedding space, metric optimization | has parent organization: University of Southern California; Los Angeles; USA | NIBIB K01EB013633; NIBIB P41EB015922 |
Available for download, Runs on Windows, Runs on Linux, Free | SCR_015524 | Metric Optimization for Computational Anatomy (MOCA), Metric Optimization for Computational Anatomy | 2026-07-28 09:43:55 | 1 | ||||||||
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ReproSchema Resource Report Resource Website |
ReproSchema (RRID:SCR_027848) | software application, source code, software resource | Software standardized framework for creating, sharing, and reusing cognitive and clinical assessments. Standardized form generation and data collection schema to harmonize results by design across projects. Used for enhancing research reproducibility through standardized survey data collection. | ReproNim, FAIR, standardized framework, creating, sharing, reusing, cognitive, clinical, assessment, standardized form generation, data collection schema, | NIBIB P41EB019936; NIH Office of the Director OT2OD032720 |
PMID:40644691 | Free, Available for download, Freely available | SCR_027848 | 2026-07-28 09:47:17 | 0 |
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