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On page 83 showing 1641 ~ 1660 out of 2,818 results
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    • RRID:SCR_013306

    This resource has 1+ mentions.

http://bowtie-bio.sourceforge.net/crossbow/index.shtml

A scalable software pipeline for whole genome resequencing analysis.

Proper citation: Crossbow (RRID:SCR_013306) Copy   

    • RRID:SCR_013488

    This resource has 1+ mentions.

http://tomcatbackup.esat.kuleuven.be/inclusive/

A suit of algorithms and tools for the analysis of gene expression data and the discovery of cis-regulatory sequence elements.

Proper citation: INCLUSive (RRID:SCR_013488) Copy   

    • RRID:SCR_013403

    This resource has 1+ mentions.

http://ctb.pku.edu.cn/main/SheGroup/Software/MED2.htm

A non-supervised gene prediction algorithm for prokaryotic genomes with multivariate entropy distance method.

Proper citation: MED (RRID:SCR_013403) Copy   

    • RRID:SCR_013373

http://hannonlab.cshl.edu/Alta-Cyclic/main.html

An Illumina Genome-Analyzer (Solexa) base caller.

Proper citation: Alta-Cyclic (RRID:SCR_013373) Copy   

    • RRID:SCR_011815

    This resource has 10+ mentions.

http://www.cisd.ethz.ch/software/openBIS

Software for an open, distributed system for managing biological information that supports biological research data workflows from the source (i.e. the measurement instruments) to facilitate the process of answering biological questions by means of cross-domain queries against raw data, processed data, knowledge resources and its corresponding metadata. The openBIS software framework can be easily extended and has been customized for the following technologies: * High Content Screening * Proteomics * Deep Sequencing * Metabolomics

Proper citation: openBIS (RRID:SCR_011815) Copy   

    • RRID:SCR_011810

    This resource has 100+ mentions.

http://www.ebi.ac.uk/Tools/msa/kalign/

A fast and accurate multiple sequence alignment algorithm.

Proper citation: Kalign (RRID:SCR_011810) Copy   

    • RRID:SCR_011779

    This resource has 100+ mentions.

http://wishart.biology.ualberta.ca/cgview/

A Java package for generating high quality, zoomable maps of circular genomes. Its primary purpose is to serve as a component of sequence annotation pipelines, as a means of generating visual output suitable for the web., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: CGView (RRID:SCR_011779) Copy   

    • RRID:SCR_011814

    This resource has 1+ mentions.

http://bioen-compbio.bioen.illinois.edu/PSAR-Align/

Software for improving multiple sequence alignment using probabilistic sampling.

Proper citation: PSAR-Align (RRID:SCR_011814) Copy   

    • RRID:SCR_011780

http://gaggle.systemsbiology.net/docs/geese/genomebrowser/

An open source software tool for visualizing high-density data plotted against coordinates on the genome.

Proper citation: Gaggle (RRID:SCR_011780) Copy   

    • RRID:SCR_011826

    This resource has 1+ mentions.

http://www.csd.uwo.ca/~ilie/HiTEC/

Accurate error correction in high-throughput sequencing data.

Proper citation: HiTEC (RRID:SCR_011826) Copy   

    • RRID:SCR_011821

    This resource has 50+ mentions.

https://bioinf.eva.mpg.de/patman/

Software that searches for short patterns in large DNA databases, allowing for approximate matches., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: PatMaN (RRID:SCR_011821) Copy   

    • RRID:SCR_011825

    This resource has 100+ mentions.

http://bix.ucsd.edu/projects/hammer/

A tool for error correction of short read datasets with non-uniform coverage, such as single-cell data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: Hammer (RRID:SCR_011825) Copy   

    • RRID:SCR_011809

    This resource has 500+ mentions.

http://infernal.janelia.org/

Software for searching DNA sequence databases for RNA structure and sequence similarities.

Proper citation: Infernal (RRID:SCR_011809) Copy   

    • RRID:SCR_011800

    This resource has 50+ mentions.

http://www.ige.tohoku.ac.jp/joho/gmProject/gmhome.html

A graphical interface for comparative genomics.

Proper citation: GenomeMatcher (RRID:SCR_011800) Copy   

    • RRID:SCR_011801

    This resource has 1+ mentions.

http://www-ps.informatik.uni-tuebingen.de/itNew/?page_id=1160

Alignment visualization based on SuperGenome coordinates.

Proper citation: GenomeRing (RRID:SCR_011801) Copy   

    • RRID:SCR_011802

    This resource has 1+ mentions.

http://try-gobe.appspot.com/

An interactive, web-based tool for comparative genomic visualization.

Proper citation: Gobe (RRID:SCR_011802) Copy   

    • RRID:SCR_011803

    This resource has 1+ mentions.

http://cas-bioinfo.cas.unt.edu/gsv/homepage.php

Software that allows users to upload files which contain synteny regions between two or more genomes and interactively visualize the synteny between them.

Proper citation: GSV (RRID:SCR_011803) Copy   

    • RRID:SCR_011797

    This resource has 1+ mentions.

http://utgenome.org/index.html

An open-source software for developing personalized genome browsers that work in web browsers.

Proper citation: UTGB Toolkit (RRID:SCR_011797) Copy   

    • RRID:SCR_011836

    This resource has 50+ mentions.

http://graphics.med.yale.edu/trim/

A fast and lightweight software to trim adapters and low quality regions in reads from ultra high-throughput next-generation sequencing machines.

Proper citation: Btrim (RRID:SCR_011836) Copy   

    • RRID:SCR_011849

    This resource has 100+ mentions.

http://www.cs.helsinki.fi/u/lmsalmel/coral/

An error correction algorithm for correcting reads from DNA sequencing platforms such as the Illumina Genome Analyzer or HiSeq platforms or Roche/454 Genome Sequencer.

Proper citation: Coral (RRID:SCR_011849) Copy   

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The PRECISE-TBI toolbox are a collection tools and resources to increase rigor and reproducibility with Traumatic Brain Injury within the PRE Clinical Interagency reSearch resourcE - Traumatic Brain Injury (PRECISE-TBI). Please learn more about PRECISE-TBI at https://www.precise-tbi.org

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