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https://nanostring.com/products/cosmx-spatial-molecular-imager/
Integrated system with mature cyclic fluorescent in situ hybridization chemistry, resolution imaging readout, interactive data analysis and visualization software. Analysis platform to provide spatial multiomics with formalin-fixed paraffin-embedded and fresh frozen tissue samples at cellular and subcellular resolution. CosMx SMI enables rapid quantification and visualization of up to 1,000 RNA and 64 validated protein analytes. Spatial single-cell imaging platform that drives deeper insights for cell atlasing, tissue phenotyping, cell-cell interactions, cellular processes, and biomarker discovery.
Proper citation: NanoString: CosMx Spatial Molecular Imager (RRID:SCR_023909) Copy
https://www.sunchrom.de/en/products/maldi-ms-sample-preparation-2/suncollect-maldi-sprayer.html
For tissue preparation for Imaging MALDI. The sprayer can handle fresh-frozen or FFPE tissue sections. Enzymes such as trypsin can be applied to the tissue for in situ digestion. Sprayer offers the following key features: Automated delivery of matrix, enzyme or derivatization solutions; 6 port PEEK valve with low dead-volume to minimise liquid usage; Automatic self-cleaning function at end of matrix application; 100 % biocompatible; Compact unit 36 x 49 x 40 cm (w,d,h);Preprogrammed spray protocols;Up to 8 sample slides can be sprayed simultaneously;Easy to use software.
Proper citation: SunCollect MALDI Sprayer (RRID:SCR_023907) Copy
https://www.sunchrom.de/en/products/maldi-ms-sample-preparation-2/suncollect-cf-spotter.html
CF-Spotter for MALDI-TOF microbial identification. Enables fast, efficient and reproducible sample preparation for MALDI-TOF microbial identification system and relieves your laboratory staff from tedious and time-consuming pipetting. Due to the non-contact application of the solutions, there is no carryover of the samples and the costs for consumables such as pipette tips are eliminated.
Proper citation: SunChrom: SunCollect CF Spotter (RRID:SCR_023906) Copy
https://www.sunchrom.de/en/products/maldi-ms-sample-preparation-2/sundigest.html
SunDigest incubation device provides fully software controlled and highly reproducible digestion process under standardized conditions. Feature includes Temperatures precisely adjustable between 4 °C and 50 °C; On-Tissue digestion process under optimal humidity; Preservation of spatial resolution; High performance digestion at 50 °C; Full digestion process control.Essential for reproducible results.
Proper citation: SunChrom: SunDigest Incubator (RRID:SCR_023905) Copy
https://www.sunchrom.de/en/products/maldi-ms-sample-preparation-2/suntissueprep.html
System automates all tissue section preparation steps that were previously performed manually. Deparaffinization, rehydration, antigen-retrieval and pH-adjustment steps are performed efficiently, reliably and fully automated.
Proper citation: SunChrom: SunTissuePrep Tissue Section Preparation System (RRID:SCR_023904) Copy
https://genome.sph.umich.edu/wiki/EMMAX
Software statistical test for large scale human or model organism association mapping accounting for the sample structure. In addition to the computational efficiency obtained by EMMA algorithm, EMMAX takes advantage of the fact that each loci explains only a small fraction of complex traits, which allows us to avoid repetitive variance component estimation procedure, resulting in a significant amount of increase in computational time of association mapping using mixed model.
Proper citation: EMMAX (RRID:SCR_024012) Copy
Leica ST5010 Autostainer XL provides reproducible, consistent high quality staining, and increased workload throughput compared to manual staining.
Proper citation: Leica: Autostainer ST5010 XL (RRID:SCR_023957) Copy
https://www.beckman.com/flow-cytometry/clinical-flow-cytometers/navios-ex
Designed specifically for clinical laboratory NAVIOS EX 10-color flow cytometer delivers performance with improved sample traceability and reporting functions. Navios EX has two optional ready-to-use IVD reagent systems, the Navios Tetra System for simultaneous identification and enumeration of T, B and NK lymphocytes and the ClearLLab 10C System – the first FDA cleared and CE marked integrated leukemia and lymphoma immunophenotyping system.
Proper citation: Beckman Coulter: Navios EX flow cytometer (RRID:SCR_023797) Copy
Software extensible open source radiation therapy research platform based on the DICOM standard. It also functions as a cross-platform DICOM RT viewer.
Proper citation: dicompyler (RRID:SCR_024006) Copy
https://cran.r-project.org/web/packages/foreign/index.html
Software tool for reading and writing data stored by some versions of 'Epi Info', 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka', and for reading and writing some 'dBase' files.
Proper citation: foreign (RRID:SCR_024025) Copy
https://www.nrel.gov/grid/wind-toolkit.html
United States national wind dataset. Provides high spatial and temporal resolution wind power, wind power forecast, and meteorological data for 7-year period at over 126,000 locations throughout continental United States. The largest publicly available wind power data set in the world. Used for wind energy integration studies. It is accessible through Web-based API.
Proper citation: Wind Integration National Dataset Toolkit (RRID:SCR_023782) Copy
https://mass-spec.stanford.edu/instruments
Agilent 6495C triple quadrupole LC/MS system increases capacity and sensitivity for targeted quantitation applications. Used to investigate more diverse and biologically relevant groups of targeted peptides, small molecules and metabolites in single experiment without compromising sensitivity, quantitative accuracy, or linearity.
Proper citation: Agilent: 6495 Triple Quadrupole LC/MS (RRID:SCR_023937) Copy
https://github.com/rrwick/Deepbinner
Software tool for demultiplexing barcoded Oxford Nanopore sequencing reads.Signal level demultiplexer for Oxford Nanopore reads.
Proper citation: Deepbinner (RRID:SCR_024001) Copy
https://www.leica-microsystems.com/products/thunder-imaging-systems/p/thunder-imager-3d-live-cell/
Advanced widefield microscope enabling use of 3D specimens with camera based fluorescence microscopes. System ensures low phototoxicity and photobleaching, i.e., higher throughput with optimal conditions.
Proper citation: Leica: Thunder Imager Live Cell system (RRID:SCR_023794) Copy
University of Lethbridge with campuses in Lethbridge and Calgary, is one of Canada"s leading research institutions.
Proper citation: University of Lethbridge; Alberta; Canada (RRID:SCR_023792) Copy
https://www.eneuro.org/content/9/5/ENEURO.0099-22.2022
Open source modular apparatus to produce guide cannulas exploiting 3D printing technology. Step by step procedure to realize hippocampal guide cannulas. 3D-printed guide cannula implant, as well as rotary tool based cutting station for fabrication of cannulae. Useful to conduct research in all the fields where access to brain areas is needed.
Proper citation: Customized Guide Cannulas (RRID:SCR_023941) Copy
https://github.com/Nexusger/AllenMouseBrainImageLoader
Respository contains two small software tools which render annotation and images of the Allen Mouse Brain Atlas. Both tools generate 1304 images of the Mouse Brain (456 sagital, 528 coronal and 320 axial).
Proper citation: Allen Mouse Brain ImageLoader (RRID:SCR_023827) Copy
https://www.ambulatory-monitoring.com/pvt-192-psychomotor-vigilance-monitor
System includes PVT-192 monitor and REACT software. Used for reaction time testing for long-term, large-scale testing of vigilance, effects of sleep deprivation, and drug effects. Used for PVT test wherever measures of performance or sleepiness effects are needed.
Proper citation: Ambulatory Monitoring: Psychomotor Vigilance Task system (RRID:SCR_024213) Copy
One of nine Councils within United Kingdom Research and Innovation, an organisation that brings together the UK’s Research Councils, Innovate UK and Research England. Works in partnership with universities, research organisations, businesses, charities, and government to create the environment for research and innovation.
Proper citation: Science and Technology Facilities Council (RRID:SCR_016713) Copy
https://codemeta.github.io/codemeta-generator/
Web application that creates CodeMeta files.
Proper citation: CodeMeta Generator (RRID:SCR_024601) Copy
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