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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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GLAD Resource Report Resource Website 100+ mentions |
GLAD (RRID:SCR_001284) | GLAD | software resource | Software for analysis of array CGH data: detection of breakpoints in genomic profiles and assignment of a status (gain, normal or loss) to each chromosomal regions identified. | comparative genomic hybridization, breakpoint, copy number variation, microarray |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:15381628 | Free, Available for download, Freely available | OMICS_02053 | SCR_001284 | GLAD - Gain and Loss Analysis of DNA, Gain and Loss Analysis of DNA | 2026-07-25 12:10:24 | 283 | ||||||
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Bycom Resource Report Resource Website |
Bycom (RRID:SCR_000659) | software resource | A software which can perform methylcytosine calling from BS-seq (WGBS and RRBS), and permits either unmapped reads (FASTQ) or mapped reads (SAM/BAM) to be used as the input data. Certain SNPs (C>A/G) can also be selected in the output. | methylcytosine, bs-seq, fastq, sam, bam, snps, snp, wgbs, rrbs, sorftw |
is listed by: OMICtools has parent organization: SourceForge |
PMID:25255082 | Free, Available for download, Freely available | OMICS_00594 | SCR_000659 | 2026-07-25 12:10:24 | 0 | ||||||||
|
OncoMerge Resource Report Resource Website 1+ mentions |
OncoMerge (RRID:SCR_023079) | software resource | Software tool to integrate somatic mutation types into comprehensive integrated somatic mutation matrix for downstream analyses.Somatic mutation integration platform that tames allelic heterogeneity, discovers causal mutations, integrates binary PAM and fusion with quantitative CNA data types, and overcomes known obstacles in cancer genetics. Used for systematic integration of protein affecting mutations, gene fusions, and copy number alterations into comprehensive somatic mutational profile. | integrate somatic mutation types, comprehensive integrated somatic mutation matrix, downstream analyses, protein affecting mutations, gene fusions, copy number alterations, systematic integration, comprehensive somatic mutational profile, | DOI:10.1101/2022.07.22.501139 | Free, Available for download, Freely available | SCR_023079 | 2026-07-25 12:10:27 | 1 | ||||||||||
|
MS-DIAL Resource Report Resource Website 50+ mentions |
MS-DIAL (RRID:SCR_023076) | software resource | Software tool for data independent MS/MS deconvolution for comprehensive metabolome analysis. Universal program for untargeted metabolomics that supports multiple instruments (GC/MS, GC/MS/MS, LC/MS, and LC/MS/MS) and MS vendors (Agilent, Bruker, LECO, Sciex, Shimadzu, Thermo, and Waters). Used for untargeted metabolomics and lipidomics supporting any type of chromatography/mass spectrometry methods. | Data independent MS/MS deconvolution, metabolome analysis, untargeted metabolomics universal program, supports multiple instruments and MS vendors, untargeted metabolomics and lipidomics, chromatography, mass spectrometry | PMID:25938372 | Free, Available for download, Freely available | biotools:ms_dial | https://bio.tools/ms_dial, https://github.com/mtbinfo-team/mtbinfo.github.io, https://mtbinfo-team.github.io/mtbinfo.github.io/ | SCR_023076 | 2026-07-25 12:10:24 | 80 | ||||||||
|
AMSTAR Resource Report Resource Website 1+ mentions |
AMSTAR (RRID:SCR_023194) | data or information resource | Guide tool to assess methodological quality of systematic reviews. Used to evaluate systematic reviews of randomised trials. AMSTAR 2 enables more detailed assessment of systematic reviews that include randomised or non-randomised studies of healthcare interventions, or both. | assess methodological quality of systematic reviews, evaluate systematic reviews, randomised trials, non-randomised studies, healthcare interventions | is related to: AMSTAR 2 | PMID:17302989 DOI:10.1136/bmj.j4008 |
Free, Freely available | SCR_023194 | A measurement tool to assess systematic reviews | 2026-07-25 12:10:27 | 5 | ||||||||
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Fluidigm: Hyperion Imaging System Resource Report Resource Website 1+ mentions |
Fluidigm: Hyperion Imaging System (RRID:SCR_023195) | instrument resource | Imaging system enables comprehensive analysis of cellular phenotypes. Allows access to single cell insights. This includes deeper understanding of intricate spatial relationships of cells, pathways and phenotypes in tissue microenvironment. | Standard BioTools Inc., imaging mass cytometry, cellular phenotypes, single cell, tissue microenvironment, imaging, instrument, equipment, USEDit, | is listed by: USEDit | SCR_023195 | Hyperion™ Imaging System | 2026-07-25 12:10:28 | 5 | ||||||||||
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LI-COR: Odyssey Fc Imaging System Resource Report Resource Website 1+ mentions |
LI-COR: Odyssey Fc Imaging System (RRID:SCR_023227) | instrument resource | System used to image and analyze Western blots. Odyssey Fc imager has been discontinued. | LI-COR Bioscience, gel imager, LI-COR imaging system, Fc Imaging System, instrument, equipment, USEDit | is listed by: USEDit | Restricted | https://licor.app.boxenterprise.net/s/2o234webfretfxbk3m3k | SCR_023227 | 2026-07-25 12:10:29 | 9 | |||||||||
|
Andor: iXon Ultra EMCCD camera Resource Report Resource Website 1+ mentions |
Andor: iXon Ultra EMCCD camera (RRID:SCR_023166) | instrument resource | Scientific camera with EMCCD image sensor that is capable of detecting single photon events without image intensifier, achievable by way of unique electron multiplying structure built into the chip. | Instrument, Equipment, USEDit, Andor, scientific camera, EMCCD image sensor | is listed by: USEDit | SCR_023166 | 2026-07-25 12:10:27 | 3 | |||||||||||
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Andor: Luca S EMCCD camera Resource Report Resource Website 1+ mentions |
Andor: Luca S EMCCD camera (RRID:SCR_023165) | instrument resource | Luca-S camera of single photon sensitive imaging Andor family scientific cameras with Electron Multiplying Charge Coupled Device detector, designed for most challenging low-light imaging applications. | Instrument, Equipment, USEDit, Andor, single photon sensitive imaging camera, scientific camera, Electron Multiplying Charge Coupled Device detector | is listed by: USEDit | SCR_023165 | 2026-07-25 12:10:30 | 1 | |||||||||||
|
Heka Elektronik: InstruTECH ITC-18 Resource Report Resource Website 1+ mentions |
Heka Elektronik: InstruTECH ITC-18 (RRID:SCR_023164) | instrument resource | Second generation low noise 16 bit computer interface from Instrutech Corporation. 16-bit Multi-Channel Data Acquisition Interface with PCI or USB host adapter. | Instrument, Equipment, USEDit, AutoMate Scientific Inc., computer interface, Instrutech, multi channel data acquisition interface | is listed by: USEDit | SCR_023167 | https://alascience.com/products/pdf/p_itc18.pdf | SCR_023164 | 2026-07-25 12:10:28 | 3 | |||||||||
|
Human Thalamus in 3D Stereotactic Coordinates Resource Report Resource Website 1+ mentions |
Human Thalamus in 3D Stereotactic Coordinates (RRID:SCR_014214) | image collection, data or information resource | A research tool for clinical and experimental neuroscience, which provides images of human thalamus in the stereotactic planes of the coordinate system based on intercommissural line. Images include histological sagittal sections, sagittal maps, coronal maps, horizontal maps, and MRI images all from the same brain. The website also provides materials and methods section, references to the articles and presentations describing research data (on which the maps are based), and a bibliography on the synaptic relationships of subcortical and cortical afferents with projection and local circuit neurons in the motor thalamus. | Thalamic motor nuclei, stereotactic atlas plates, AC-PC coordinates, VIM, thalamic nomenclatures, Nigrothalamic projection zone, Pallidothalamic projection zone, Cerebellothalamic projection zone, Thalamic GABAergic circuits, GAD65 | has parent organization: University of Iowa; Iowa; USA | Register to access original images, Acknowledgement requested | SCR_014214 | human motor thalamus | 2026-07-25 12:10:27 | 1 | |||||||||
|
airr_tools Resource Report Resource Website 1+ mentions |
airr_tools (RRID:SCR_023297) | software resource | Github repository for the paper "T cell receptor repertoire sequencing reveals chemotherapy-driven clonal expansion in colorectal liver metastases" by Høye et al. | Github repository for the paper, T cell receptor repertoire, repertoire sequencing, clonal expansion, colorectal liver metastases | Free, Available for download, Freely available | SCR_023297 | 2026-07-25 12:10:29 | 1 | |||||||||||
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Thermo Fisher: Sartorius: Octet BLI systems Resource Report Resource Website 10+ mentions |
Thermo Fisher: Sartorius: Octet BLI systems (RRID:SCR_023267) | instrument resource | Octet BLI systems enable real-time, label-free analysis for determination of kinetics, affinity and antibody/protein quantitation. Includes Octet Analysis Studio for analysis of assays measuring kinetics and affinity values for drug-target binding and high-throughput kinetic screening for lead identification. Typical applications include kinetic analysis of protein-protein, protein-small molecules, antibody-antigen, antibody-VLP, antibody-Fc gamma receptors, including antibody-neonatal receptor (FcRn) interactions. Additional applications supported include lot release and stability analysis of drug molecules based on binding kinetics and affinity. | Sartorius, Octet Analysis Studio, Bio-Layer Interferometry, protein quantitation, assays measuring kinetics analysis, affinity values analysis, instrument, equipment, USEDit | is listed by: USEDit | Restricted | SCR_023267 | Octet BLI systems, Octet BLI systems with Octet Analysis Studio | 2026-07-25 12:10:29 | 14 | |||||||||
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Eppendorf: Mastercycler nexus PCR Thermal Cycler Resource Report Resource Website |
Eppendorf: Mastercycler nexus PCR Thermal Cycler (RRID:SCR_023266) | instrument resource | Thermal cycler conduct PCR runs with range of standard vessel types, from 0.2 mL tubes to 96 well plates using single 96-well aluminum block. Can accommodate 96-well PCR plates, 0.2 mL PCR tubes, 0.2 mL PCR tube strips, and 0.5 mL PCR tubes.Mastercycler nexus cycler can email you when PCR run is complete. | Eppendorf, Thermal cycler, PCR, 96-well PCR plates, 0.2 mL PCR tubes, 0.2 mL PCR tube strips, 0.5 mL PCR tubes, instrument, equipment, USEDit | is listed by: USEDit | Restricted | SCR_023266 | 2026-07-25 12:10:28 | 0 | ||||||||||
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Lonza: 4D Nucleofector X Unit Resource Report Resource Website 1+ mentions |
Lonza: 4D Nucleofector X Unit (RRID:SCR_023155) | instrument resource | One of four functional modules of 4D-Nucleofector System. It supports Nucleofection of various cell numbers cells in different formats. | Instrument, equipment, Lonza, USEDit, electroporation based transfection, nucleofection, transfer of nucleic acids into cells, | is listed by: USEDit | SCR_023155 | 4D Nucleofector X Unit, 4D Nucleofector X Unit Amaxa technology | 2026-07-25 12:10:26 | 8 | ||||||||||
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Thermo Fisher: Cytomat 10 Hotel Ambient Storage Resource Report Resource Website |
Thermo Fisher: Cytomat 10 Hotel Ambient Storage (RRID:SCR_023273) | instrument resource | Storage used for high capacity random access storage (210 SBS microplates) at ambient conditions. The Cytomat 10 Hotel (PH) offers multiple transfer positions, dual access point (DAP) and as combined benchtop-under bench solution, it allows flexible placement within the laboratory. | ThermoFisher Scientific, ambient conditions storage, microplate storage, instrument, equipment, USEDit | is listed by: USEDit | Restricted | SCR_023273 | 2026-07-25 12:10:28 | 0 | ||||||||||
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ERMA: Automatic blood cell counter PCE-210N Resource Report Resource Website |
ERMA: Automatic blood cell counter PCE-210N (RRID:SCR_023148) | instrument resource | Automatic cell counting instrument. Used to count blood cells. | Instrument, Equipment, USEDit, Automatic cell counting, count blood cells, | is listed by: USEDit | SCR_023148 | Automatic blood cell counter PCE-210N | 2026-07-25 12:10:26 | 0 | ||||||||||
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Adobe Acrobat Pro Resource Report Resource Website |
Adobe Acrobat Pro (RRID:SCR_023361) | software resource | Productivity and collaboration PDF solution, combining Acrobat desktop software, mobile scan app, signature app and Acrobat Reader mobile app enhanced with premium mobile features and premium Document Cloud services. | pdf, Acrobat desktop, mobile scan app, signature app, Acrobat Reader mobile app, Document Cloud | Restricted | SCR_023361 | 2026-07-25 12:10:32 | 0 | |||||||||||
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Eppendorf: Research plus 100-1000 uL 1 channel pipette Resource Report Resource Website |
Eppendorf: Research plus 100-1000 uL 1 channel pipette (RRID:SCR_023466) | instrument resource | Eppendorf manual, autoclavable, air-cushion pipette for accurate ergonomic pipetting of aqueous solutions. | Eppendorf, 100-1000 uL, one channel pipette, pipette, manual, autoclavable, instrument, equipment, USEDit | is listed by: USEDit | Restricted | SCR_023466 | Eppendorf Research® plus 100-1000 uL 1-channel pipette | 2026-07-25 12:10:29 | 0 | |||||||||
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Eppendorf: Research plus 2 ��� 20 ��L yellow 1 channel pipette Resource Report Resource Website |
Eppendorf: Research plus 2 ��� 20 ��L yellow 1 channel pipette (RRID:SCR_023465) | instrument resource | Mechanical and autoclavable, manual, air cushion pipette for accurate, ergonomic pipetting of aqueous solutions. | Eppendorf, 2 – 20 µL, yellow tips, one channel pipette, autoclavable, manual, pipette, instrument, equipment, USEDit | is listed by: USEDit | Restricted | SCR_023465 | , Eppendorf Research® plus 2 – 20 µL yellow 1-channel pipette | 2026-07-25 12:10:30 | 0 |
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