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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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aTag Generator Resource Report Resource Website |
aTag Generator (RRID:SCR_000801) | aTag, aTags, | software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on August 13, 2012. Snippets of HTML that capture the information that is most important in a machine-readable, interlinked format, making it easier to see the big picture. aTags work with any Web text and can store and connect any textual element that is highlighted in a browser. The structure of the embedded RDF/OWL is decidedly simple: a very short piece of human-readable text that is "tagged" with relevant ontological entities. An aTag generator can be easily added to any web browser and allows researchers to quickly generate aTags out of key statements from web pages, such as PubMed abstracts. The resulting aTags can be embedded anywhere on the web, for example on blogs, wikis, or biomedical databases. aTag demonstrates how the resulting statements that are distributed over the web can be searched, visualized and aggregated with Semantic Web / Linked Data tools, and discusses how aTags can be used to answer practically relevant biomedical questions even though their structure is very simple. aTags are based on Semantic Web standards and Linked Data practices. Specifically, they make use of RDFa, the SIOC vocabulary and various domain ontologies and taxonomies that are available in RDF/OWL format. The autocomplete functionality is based on Apache Solr. Reference: Simple, ontology-based representation of biomedical statements through fine-granular entity tagging and new web standards Matthias Samwald and Holger Stenzhorn. Bio-Ontologies 2009., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | semantic mark up, ontology, semantic tagging |
is listed by: FORCE11 has parent organization: Digital Enterprise Research Institute |
Konrad Lorenz Institute for Evolution and Cognition Research; Altenberg; Austria ; Science Foundation Ireland SFI/08/CE/I1380 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-37038 | SCR_000801 | associative tags, associated tags | 2026-07-25 12:04:52 | 0 | ||||||
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Ecole Normale Superieure; Paris; France Resource Report Resource Website |
Ecole Normale Superieure; Paris; France (RRID:SCR_000960) | ENS | university | A higher education institute for advanced undergraduate and graduate studies in France. The institute has fourteen teaching and research departments that span the humanities and sciences. | france, french, undergraduate, graduate |
is parent organization of: Brian Simulator is parent organization of: yMGV - Yeast microarray global viewer |
grid.5607.4, ISNI: 121105547, nlx_73418, Crossref funder ID: 100007649, Wikidata: Q83259 | https://ror.org/05a0dhs15 | SCR_000960 | Ecole Normale Superieure, �cole Normale Sup�rieure | 2026-07-25 12:04:52 | 0 | |||||||
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Catholic University of the Sacred Heart; Milan; Italy Resource Report Resource Website 100+ mentions |
Catholic University of the Sacred Heart; Milan; Italy (RRID:SCR_000958) | UCSC | university | An Italian private research university that offers undergraduate, graduate and postdoctoral level degrees in both Italian and English. | italy, private, research, undergraduate, graduate, english, italian | is related to: PharmaCog | ISNI:0000 0001 0941 3192, Wikidata:Q229022, nlx_158321, grid.8142.f, Crossref funder ID:501100005743 | https://ror.org/03h7r5v07 | SCR_000958 | Catholic University of the Sacred Heart, Universita Cattolica del Sacro Cuore, Universit� Cattolica del Sacro Cuore, Universit� Cattolica, Universita Cattolica | 2026-07-25 12:04:54 | 154 | |||||||
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Keyose Resource Report Resource Website |
Keyose (RRID:SCR_000798) | software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on March 5, 2014. Keyose is a project designed and led by a family physician. We are not IT focused, but health-care focused. Technology is just a tool, not our purpose. | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-31988 | http://www.keyose.com | SCR_000798 | Keyose | 2026-07-25 12:04:50 | 0 | |||||||||
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Australian Research Council Resource Report Resource Website 100+ mentions |
Australian Research Council (RRID:SCR_000952) | ARC | nonprofit organization | An Australian government agency that allocates research funding to academics and researchers at Australian universities. The mission of the council is to deliver policy and programs that advance Australian research, spur innovation and benefit the community. | funding, allocation, australia, research, academic, policy, public health, community, grant | is parent organization of: RAiD | ISNI: 0000 0004 0611 9213, Wikidata: Q4824612, nlx_156882, grid.413452.5, Crossref funder ID: 501100000923 | https://ror.org/05mmh0f86 | SCR_000952 | ARC | 2026-07-25 12:04:51 | 356 | |||||||
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Academia Sinica; Taipei; Taiwan Resource Report Resource Website |
Academia Sinica; Taipei; Taiwan (RRID:SCR_000950) | university | The national academy of Taiwan that supports research activities in a wide variety of disciplines, ranging from mathematical and physical sciences, to life sciences, and to humanities and social sciences. The institution plays a particularly important role in the academic field of Chinese Studies. | national, academy, research, math, physical science, life science, humanities, social science, chinese studies |
is parent organization of: HiPipe is parent organization of: FastSNP is parent organization of: Gene Ontology Browsing Utility (GOBU) is parent organization of: IGDB.NSCLC is parent organization of: CNVVdb - Copy Number Variations across Vertebrate genomes is parent organization of: Encyclopedia of Hepatocellular Carcinoma Genes Online is parent organization of: KnowPredsite |
THIS RESOURCE IS NO LONGER IN SERVICE | ISNI:0000 0001 2287 1366, Crossref funder ID:501100001869, grid.28665.3f, nlx_89460, Wikidata:Q337266 | https://ror.org/05bxb3784 | SCR_000950 | 2026-07-25 12:04:53 | 0 | ||||||||
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Brown University; Rhode Island; USA Resource Report Resource Website |
Brown University; Rhode Island; USA (RRID:SCR_000957) | university | A private, Ivy League research university in Rhode Island, USA. The university offers degrees at the undergraduate and graduate level in a wide variety of fields. | private, university, research, undergraduate, graduate |
uses: ReadCube is related to: Mnemiopsis Genome Project Portal is parent organization of: HapCompass is parent organization of: ASC is parent organization of: Laboratory for Neural Computation and Cognition is parent organization of: Basal Ganglia Model in Action is parent organization of: Mutation Annotation and Genomic Interpretation is parent organization of: Brown University Rhode Island Biobank Core Facility is parent organization of: GASVPro is parent organization of: Spliceman is parent organization of: Brown University Alpert Medical School Department of Molecular Pharmacology Physiology and Biotechnology is parent organization of: Brown University Department of Neuroscience is parent organization of: Brown Alpert Medical School; Rhode Island; USA is parent organization of: Rnnotator is parent organization of: Brown University Genomics Core Facility is parent organization of: Brown Proteomics Shared Resource Facility is parent organization of: Brown University Labs and Facilities is parent organization of: THetA is parent organization of: North East Cyberinfrastructure Consortium is parent organization of: GASV is parent organization of: Human Neocortical Neurosolver is parent organization of: Brown Alpert Medical School Women and Infants Hospital of Rhode Island Kilguss Research Institute Molecular Biology and Imaging Core Facility is parent organization of: RepEnrich is parent organization of: Brown University Clinical Laboratory Core Facility is parent organization of: Brown University Health Center of Biomedical Research Excellence on Opioids and Overdose Admin Core Facility is parent organization of: Brown University BUH-OPIOID-COBRE Community Engagement Core Facility is parent organization of: Brown University BUH-COBRE Translational and Transformative Core Facility is parent organization of: Brown University BUH-OPIOID COBRE Data and Research Methods Core Facility |
ISNI:0000 0004 1936 9094, Crossref funder ID:100006418, grid.40263.33, nlx_78147, Wikidata:Q49114 | https://ror.org/05gq02987 | SCR_000957 | Brown | 2026-07-25 12:04:52 | 0 | ||||||||
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Austrian Agency for Health and Food Safety Resource Report Resource Website |
Austrian Agency for Health and Food Safety (RRID:SCR_000955) | AGES | nonprofit organization | A company based in Austria that supports the management of federal agencies relating to public health, animal health, food safety, medical and drug safety, food security and consumer protection. They provide professional and scientific expertise. | public health, animal health, food safety, medical and drug safety, food security, consumer protection, research, austria, | grid.414107.7, ISNI: 0000 0001 2224 6253, nlx_157916 | https://ror.org/055xb4311 | http://www.ages.at/ages/en/ | SCR_000955 | Austrian Agency for Health and Food Safety (AGES) | 2026-07-25 12:04:54 | 0 | |||||||
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ROSTLAB Resource Report Resource Website 1+ mentions |
ROSTLAB (RRID:SCR_000792) | group | A lab organization which has bases in Munich, Germany and at Columbia University and focuses its research on protein structure and function using sequence and evolutionary information. They utilize machine learning and statistical methods to analyze genetic material and its gene products. Research goals of the lab involve using protein and DNA sequences along with evolutionary information to predict aspects of the proteins relevant to the advance of biomedical research. | protein, structure, function, dna, rna, gene, machine learning, statistics, analysis, protein, biomedical |
has parent organization: Columbia University; New York; USA is parent organization of: PredictNLS is parent organization of: SNPdbe |
NLM LM007329; NLM GM50291 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-31417 | http://cubic.bioc.columbia.edu/services/disis | SCR_000792 | Rost Group | 2026-07-25 12:04:50 | 1 | ||||||
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Aarhus University; Aarhus; Denmark Resource Report Resource Website |
Aarhus University; Aarhus; Denmark (RRID:SCR_000948) | AU | university | A public university in Denmark that offers degrees at the undergraduate and graduate level in fields such as engineering, nanotechnology, medicine and modern languages. | university, undergraduate, graduate, public, nanotechnology, engineering, medicine, modern languages, archaeology |
is parent organization of: EMI is parent organization of: FaBox is parent organization of: FastGap is parent organization of: Aarhus University Fluorescence Activated Cell Sorting Core Facility is parent organization of: Aarhus University Bioimaging Core Facility |
nlx_156945 | SCR_000948 | Aarhus Universitet, Aarhus University, University of Aarhus | 2026-07-25 12:04:51 | 0 | ||||||||
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HapCompass Resource Report Resource Website 1+ mentions |
HapCompass (RRID:SCR_000942) | algorithm | Software that utilizes a fast cycle basis algorithm for the accurate haplotype assembly of sequence data. It is able to create pairwise SNP phasings. | algorithm, haplotype, sequence, genome, dna, rna, snp |
is listed by: OMICtools has parent organization: Brown University; Rhode Island; USA |
NSF 1048831; NSF 1321000 |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00197 | SCR_000942 | 2026-07-25 12:04:52 | 1 | ||||||||
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FAS Center For Systems Biology Resource Report Resource Website 1+ mentions |
FAS Center For Systems Biology (RRID:SCR_000789) | group | A group dedicated to combining a variety of experimental and theoretical approaches to find general principles that explain the structure, behavior and evolution of cells and organisms. The center hosts a variety of fellows and faculty from various backgrounds such as biology, physics, chemistry, mathematics, computer science and engineering. | cell, organism, evolution, biology, physics, chemistry, mathematics, computer science, engineering, hybridization | has parent organization: Harvard University; Cambridge; United States | National Science Foundation DEB 0415718; National Science Foundation DEB 0640512 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30555 | SCR_000789 | FAS Center | 2026-07-25 12:04:50 | 2 | |||||||
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National Institute of Health Sciences; Tokyo; Japan Resource Report Resource Website |
National Institute of Health Sciences; Tokyo; Japan (RRID:SCR_000981) | NIHS | government granting agency | Japanese national institute that conducts testing, research, and studies toward the proper evaluation of the quality, safety, and efficacy of pharmaceutical products, foods, and numerous chemicals in the living environment. Its major responsibilities involve extensive testing and research to ensure the quality, efficacy, and safety of chemical substances (including pharmaceuticals and food) that are closely related to people's lives. | nihs, national institute, health science, japan, research, pharmaceutical products, environment, testing, Drugs-Medical Devices, chemicals | nlx_157927 | SCR_000981 | National Institute of Health Sciences - Japan, National Institute of Health Sciences (Japan), National Institute of Health Sciences | 2026-07-25 12:04:54 | 0 | |||||||||
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National Cheng Kung University; Tainan; Taiwan Resource Report Resource Website 1+ mentions |
National Cheng Kung University; Tainan; Taiwan (RRID:SCR_000980) | NCKU | university | National Cheng Kung University is a research-led comprehensive university in Tainan, Taiwan that has undergraduate, master's, and doctoral degree programs. This university has fields of: science, engineering, medicine, management, planning and design. | ncku, national cheng kung university, cheng kung, taiwan university |
is parent organization of: Apo and Holo structures DataBase is parent organization of: CoIN is parent organization of: Tumor Associated Gene database |
nlx_34096 | SCR_000980 | National Cheng Kung University, Guoli Chenggong Daxue, National Cheng Kung University (NCKU), NCKU | 2026-07-25 12:04:53 | 2 | ||||||||
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Liverpool John Moores University; Liverpool; United Kingdom Resource Report Resource Website |
Liverpool John Moores University; Liverpool; United Kingdom (RRID:SCR_000975) | LJMU | university | Liverpool John Moores University provides undergraduate, masters, and doctorate programs. | ljmu, liverpool university, liverpool, university, uk, undergraduate, graduate, doctorate, masters | nlx_158057 | SCR_000975 | Liverpool John Moores University, Liverpool John Moores University (LJMU) | 2026-07-25 12:04:54 | 0 | |||||||||
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Johns Hopkins University School of Medicine; Baltimore, Maryland; USA Resource Report Resource Website |
Johns Hopkins University School of Medicine; Baltimore, Maryland; USA (RRID:SCR_000973) | JHM | university | Johns Hopkins University School of Medicine is a medical graduate institution that provides physician, clinical fellowship and residency programs. | institution, university, baltimore, maryland, usa, medicine, medical school, med school, physician, clinical fellowship, fellowship, residency |
uses: Scizzle has parent organization: Johns Hopkins University; Maryland; USA is parent organization of: SAGE GENIE is parent organization of: Johns Hopkins NIMH Research Center Novel Therapeutics of HIV-associated Cognitive Disorders is parent organization of: Johns Hopkins University Pharmacology is parent organization of: DermAtlas. is parent organization of: DTI White Matter Atlas is parent organization of: Johns Hopkins Laboratory of Brain Anatomical MRI is parent organization of: OMIM is parent organization of: Johns Hopkins University Neuroscience is parent organization of: Johns Hopkins Alzheimer's Disease Research Center is parent organization of: Precursors of Premature Disease and Death is parent organization of: kmer-SVM is parent organization of: Johns Hopkins University - University of Maryland Diabetes Research Center Health and Populations Science Core is parent organization of: Johns Hopkins University - University of Maryland Diabetes Research Center Gene Editing Core is parent organization of: Johns Hopkins University - University of Maryland Diabetes Research Center Cell Biology Core is parent organization of: Johns Hopkins University - University of Maryland Diabetes Research Center Administrative Core is parent organization of: Johns Hopkins University - University of Maryland Diabetes Research Center is parent organization of: PhenoDB is parent organization of: Johns Hopkins Medical Institute Clinical and Translational Research Laboratory Core Facility is parent organization of: Johns Hopkins University School of Medicine Mass Spectrometry and Proteomics Core Facility is parent organization of: Johns Hopkins Reference Histology Core Facility is parent organization of: Johns Hopkins University School of Medicine Center for Proteomics Discovery CPD Core Facility |
, Wikidata: Q50363516, GRID: grid.469474.c, ISNI: 0000 0000 8617 4175, nlx_76328 | https://ror.org/037zgn354 | SCR_000973 | , Johns Hopkins Medicine, Johns Hopkins University School of Medicine (JHM), Johns Hopkins University School of Medicine | 2026-07-25 12:04:52 | 0 | |||||||
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Max Planck Institute for Marine Microbiology; Bremen; Germany Resource Report Resource Website |
Max Planck Institute for Marine Microbiology; Bremen; Germany (RRID:SCR_000978) | MPI | institution | The Max Planck Institute for Marine Microbiology is an international university that offers the PhD programme International Max-Planck Research School (IMPRS) of Marine Microbiology (Marmic) together with the Alfred Wegener Institute for Polar and Marine Research, the University of Bremen and Jacobs University Bremen. Currently, the institute consists of four departments with several associated research groups: Microbiology, Biogeochemistry, Molecular Ecology, and Symbiosis. | institute, microbiology, marine, marine microbiology, bremen, germany, mpi for marine microbiology, phD program, marmic, imprs, microbiology, biogeochemistry, molecular ecology, ecology, symbiosis |
has parent organization: Max-Planck-Gesellschaft is parent organization of: MeGX is parent organization of: TETRA is parent organization of: TaxSOM is parent organization of: SINA |
ISNI: 0000 0004 0491 3210, nlx_81711, Wikidata: Q876880, grid.419529.2 | https://ror.org/02385fa51 | SCR_000978 | max planck institut fur marine mikrobiologie, Max Planck Institute for Marine Microbiology | 2026-07-25 12:04:54 | 0 | |||||||
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Montana State University Resource Report Resource Website 1+ mentions |
Montana State University (RRID:SCR_000979) | MSU | university | Montana State University is a university institute has programs for undergraduate, master's and doctoral degrees. There are 54 master's degree options, 37 doctoral degree options including one specialist program, and 14 certificate options. | msu, undergraduate, graduate, master's, doctoral, phD, montana, institution, university |
is parent organization of: MSU Subzero Science and Engineering Research Core Facility is parent organization of: MSU Magnetic Resonance Core Laboratory is parent organization of: Montana State University, Department of Cell Biology and Neuroscience is parent organization of: Yogo Data Management System is parent organization of: NeuroSys Data Management System is parent organization of: MSU Paleohistology Core Laboratory is parent organization of: MSU Animal Resource Center is parent organization of: Montana State University Bioinformatics Core Facility is parent organization of: MSU FACS Core Laboratory is parent organization of: Montana State University Functional Genomics Core Facility is parent organization of: MSU Imaging and Chemical Analysis Core Laboratory is parent organization of: MSU Large animal BSL-2 is parent organization of: MSU Metabolomics Core Facility is parent organization of: MSU Microscopy Core Facility is parent organization of: MSU Proteomics Core Laboratory is parent organization of: MSU Research Computing Group is parent organization of: MSU Transmission Electron Microscopy Core Laboratory is parent organization of: MSU X-ray Crystallography Core Laboratory is parent organization of: Montana State University Labs and Facilities is parent organization of: Montana State University Mass Spectrometry Core Facility is parent organization of: Montana State University Research Cyberinfrastructure Core Facility is parent organization of: Montana State University Cellular Analysis Core Facility is parent organization of: Montana State University Social Data Collection and Analysis Services Core Facility is parent organization of: Montana State University Imaging and Chemical Analysis Laboratory Core Facility is parent organization of: Montana State University Cryo-EM Core Facility is parent organization of: Montana State University Nuclear Magnetic Resonance Core Facility is parent organization of: Montana State University Montana Microfabrication Core Facility is parent organization of: Montana State University Geospatial Core Facility is parent organization of: Montana State University Animal Resources Center Core Facility is parent organization of: Montana State University CBE Bioimaging and Analytical Core Facility is parent organization of: Montana State University Biophotonics Core Facility |
nlx_53872, ISNI:0000 0001 2156 6108, grid.41891.35, Crossref funder ID:100009501, Wikidata:Q1861687 | https://ror.org/02w0trx84 | SCR_000979 | Montana State University, Montana State University (MSU), Montana State | 2026-07-25 12:04:52 | 2 | |||||||
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International Institute of Molecular and Cell Biology; Warsaw; Poland Resource Report Resource Website 1+ mentions |
International Institute of Molecular and Cell Biology; Warsaw; Poland (RRID:SCR_000971) | IIMCB | institution | International Institute of Molecular and Cell Biology creates partnerships with research centers within and outside Poland. This organization provides a base of administration, management of finances and resources, sharing space and equipment, grant writing and grant management procedures, etc. They organize workshops, training courses, conferences and other scientific events for researchers of various specialties and nationalities. Additionally, this organization commercializes results to provide biotechnological solutions with regards to the global economy and global research services deals. | poland, warsaw, institution, administration, management, equipment, grant writing, grant management, commercial, biotechnology, global economy, global research, research center, partnership |
is parent organization of: MetaLocGramN is parent organization of: Modomics |
nlx_156957, grid.419362.b | https://ror.org/01y3dkx74 | SCR_000971 | International Institute of Molecular and Cell Biology, International Institute of Molecular and Cell Biology (IIMCB) | 2026-07-25 12:04:54 | 1 | |||||||
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Indian Institute of Science; Bangalore; India Resource Report Resource Website |
Indian Institute of Science; Bangalore; India (RRID:SCR_000969) | IISc | institution | A public research university for science and higher education in India. The university has six main divisions, including the biological sciences, chemical sciences, electrical sciences, mechanical sciences, physical and mathematical sciences, and interdisciplinary research. | university, science institute, higher education |
is parent organization of: SUPFAM is parent organization of: CADB - Conformational Angles DataBase of Proteins is parent organization of: MulPSSM is parent organization of: PALI- Phylogeny and Alignment of homologous protein str |
nlx_73023 | SCR_000969 | Indian Institute of Science | 2026-07-25 12:04:52 | 0 |
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