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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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TooManyCells Resource Report Resource Website 1+ mentions |
TooManyCells (RRID:SCR_025328) | software toolkit, source code, software resource | Software suite of tools, algorithms, and visualizations focusing on relationships between cell clades. This includes new ways of clustering, plotting, choosing differential expression comparisons. Identifies and visualizes relationships of single-cell clades. | Spectral clustering, radial tree, visualization, cell clades, |
is related to: too-many-cells-python is related to: TooManyCellsInteractive |
NCI T32 CA009140; NCI R01 CA215518; NHLBI R01 HL145754; Sloan Foundation ; NCI R01 CA230800 |
PMID:32123397 | Free, Available for download, Freely available | https://gregoryschwartz.github.io/too-many-cells/ | SCR_025328 | 2026-07-28 09:46:19 | 4 | |||||||
|
demuxlet Resource Report Resource Website |
demuxlet (RRID:SCR_027855) | software application, source code, software resource | Software tool that harnesses natural genetic variation to determine the sample identity of each droplet containing a single cell (singlet) and detect droplets containing two cells (doublets). Genetic multiplexing of barcoded single cell RNA-seq. | Genetic multiplexing of barcoded single cell RNA-seq, harnesses natural genetic variation, | NIAMSD R01AR071522; NIAID R21AI133337; NIDDK F30DK115167; NHLBI K25HL121295; NIDCR R03DE025665 |
PMID:29227470 | Free, Available for download, Freely available | SCR_027855 | 2026-07-28 09:47:06 | 0 | |||||||||
|
Scooby Resource Report Resource Website |
Scooby (RRID:SCR_028110) | software application, source code, software resource | Software aplication to predict scRNA-seq coverage and scATAC-seq insertion profiles along the genome at single-cell resolution. It leverages the pre-trained multi-omics profile predictor Borzoi as a foundation model, equips it with a cell-specific decoder, and fine-tunes its sequence embeddings. | convolutional neural networks, predict RNA-seq coverage, scATAC-seq insertion profiles, Borzoi, cell-specific decoder, | European Research Council ; Gene Regulation Observatory at the Broad Institute of MIT & Harvard ; NHLBI 5P01HL131477; NHGRI UM1 HG011986; NHLBI DP2 HL151353; German Research Foundation |
PMID:41125796 | Free, Available for download, Freely available | SCR_028110 | 2026-07-28 09:47:20 | 0 |
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