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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
U.S. Department of Commerce
 
Resource Report
Resource Website
1+ mentions
U.S. Department of Commerce (RRID:SCR_009859) Commerce.gov institution Executive department of the federal government concerned with promoting economic growth. Among its tasks are gathering economic and demographic data for business and government decision-making, and helping to set industrial standards. Government granting agency is parent organization of: NIST - National Institute of Standards and Technology
is parent organization of: National Oceanic and Atmospheric Administration
is parent organization of: U.S. Census Bureau
Crossref funder ID: 100000190, grid.239119.1, ISNI: 0000 0004 0478 6426, Wikidata: Q503577, nlx_144074 https://ror.org/04chq2495 SCR_009859 United States Department of Commerce 2026-07-25 12:06:59 2
U.S. Geological Survey
 
Resource Report
Resource Website
100+ mentions
U.S. Geological Survey (RRID:SCR_010168) USGS institution Scientific agency of the United States government. The scientists of the USGS study the landscape of the United States, its natural resources, and the natural hazards that threaten it. The organization's work spans the disciplines of biology, geography, geology, and hydrology. Government granting agency nlx_157935, grid.2865.9, ISNI: 121546924, Crossref funder ID: 100000203, Wikidata: Q193755 https://ror.org/035a68863 SCR_010168 United States Geological Survey 2026-07-25 12:06:56 342
AllSeq
 
Resource Report
Resource Website
AllSeq (RRID:SCR_010053) AllSeq service resource Free online tools to find the best Sequencing Service provider for your project. is listed by: OMICtools Free OMICS_01726 SCR_010053 2026-07-25 12:07:00 0
University of Lyon; France
 
Resource Report
Resource Website
University of Lyon; France (RRID:SCR_010178) university University of Lyon, located in Lyon and Saint-Étienne, France, is a center for higher education and research comprising 11 members and 24 associated institutions. is parent organization of: I3-CRB: Interoperable IT Infrastructure for Biological Resources Centres / Biobanks - France nlx_30442 http://www.univ-lyon2.fr/international-/ SCR_010178 2026-07-25 12:06:58 0
San Diego State University; California; USA
 
Resource Report
Resource Website
1+ mentions
San Diego State University; California; USA (RRID:SCR_009874) SDSU university Public research university in San Diego, California. Founded in 1897 as San Diego Normal School, it is the third-oldest university in the 23-member California State University system. is parent organization of: PRINSEQ nlx_156724, Wikidata:Q913861, ISNI:0000 0001 0790 1491, Crossref funder ID:100007099, grid.263081.e https://ror.org/0264fdx42 SCR_009874 San Diego State University 2026-07-25 12:06:58 1
IsoEM
 
Resource Report
Resource Website
10+ mentions
IsoEM (RRID:SCR_009993) IsoEM software resource Software package that can be used to infer isoform and gene expression levels from high-throughput transcriptome sequencing (RNA-Seq) data. bio.tools is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
has parent organization: University of Connecticut; Connecticut; USA
biotools:isoem, OMICS_01278 https://bio.tools/isoem SCR_009993 2026-07-25 12:06:56 10
Centre for Reviews and Dissemination
 
Resource Report
Resource Website
10+ mentions
Centre for Reviews and Dissemination (RRID:SCR_010267) CRD institution A research department of the University of York provides research-based information about the effects of health and social care interventions via their databases. The institute undertakes systematic reviews evaluating research evidence on health and public health questions of national and international importance. evidence review, research review, public health, evidence synthesis, FASEB list is related to: PROSPERO National Institute for Health Research UK Public, Available to the research community nlx_156926 http://www.york.ac.uk/ SCR_010267 University of York Centre for Reviews and Dissemination 2026-07-25 12:06:56 40
Phyre
 
Resource Report
Resource Website
500+ mentions
Phyre (RRID:SCR_010270) algorithm A structure prediction system to reliably detect remote homologies. has parent organization: Imperial College London; London; United Kingdom PMID:19247286 nlx_156932 SCR_010270 Protein Homology/Anology Recognition Engine 2026-07-25 12:07:00 665
BIOBASE Corporation
 
Resource Report
Resource Website
100+ mentions
BIOBASE Corporation (RRID:SCR_010271) commercial organization THIS RESOURCE IS OUT OF SERVICE, documented on February 1st,2022. BIOBASE offers academic and non-profit organizations free access to TRANSFAC?? non-professional version with much reduced functionality and content compared to our professional database. FASEB list is related to: Human Gene Mutation Database
is parent organization of: Genome Trax
is parent organization of: TRANSPATH
is parent organization of: Gene Regulation Programs
is parent organization of: TRANSCompel
is parent organization of: Gene Regulation Databases
THIS RESOURCE IS OUT OF SERVICE nlx_156933 SCR_010271 2026-07-25 12:06:56 183
BitSeq
 
Resource Report
Resource Website
10+ mentions
BitSeq (RRID:SCR_009904) BitSeq software resource A software application for inferring expression levels of individual transcripts from sequencing (RNA-Seq) data and estimating differential expression (DE) between conditions. bio.tools is listed by: OMICtools
is listed by: Debian
is listed by: bio.tools
DOI:10.1093/bioinformatics/btv483
DOI:10.1093/bioinformatics/bts260
, OMICS_01269, biotools:bitseq https://bio.tools/bitseq, https://sources.debian.org/src/bitseq/, SCR_009904 2026-07-25 12:07:00 19
U.S. Department of Labor
 
Resource Report
Resource Website
1+ mentions
U.S. Department of Labor (RRID:SCR_010157) DOL institution Fosters, promotes, and develops the welfare of the wage earners, job seekers, and retirees of the United States; improves working conditions; advances opportunities for profitable employment; and assures work-related benefits and rights. grid.420412.1, nlx_151864, ISNI: 0000 0001 2097 824X, Wikidata: Q628807, Crossref funder ID: 100000778 https://ror.org/05mbkbj54 SCR_010157 US Dept. of Labor, US DOL, US Department of Labor, United States Department of Labor 2026-07-25 12:07:00 1
Johns Hopkins University; Maryland; USA
 
Resource Report
Resource Website
10+ mentions
Johns Hopkins University; Maryland; USA (RRID:SCR_010247) JHU university Johns Hopkins University is private research university in Baltimore, Maryland. Founded in 1876, university was named for its first benefactor, American entrepreneur, abolitionist, and philanthropist Johns Hopkins. private, university, Baltimore, Maryland uses: DIRECT2experts
is affiliated with: Diabetes Research Centers
is related to: Alzheimers Disease Genetics Consortium
is related to: International AMD Genetics Consortium
is related to: ABX Guide
is related to: Clinical and Translational Science Awards Consortium
is parent organization of: SynaptomeDB
is parent organization of: Johns Hopkins University School of Medicine; Baltimore, Maryland; USA
is parent organization of: sim4cc
is parent organization of: MRI Studio
is parent organization of: CKID A Prospective Cohort Study of Kidney Disease in Children
is parent organization of: Nonalcoholic Steatohepatitis Clinical Research Network
is parent organization of: ASprofile
is parent organization of: GlimmerHMM
is parent organization of: Neurogenetics and Behavior Center
is parent organization of: Human Proteinpedia
is parent organization of: Schramm Lab Spinal Cord Atlases
is parent organization of: NetPath
is parent organization of: Academic Drug Discovery Consortium
is parent organization of: CardioVascular Research Grid (CVRG)
is parent organization of: Johns Hopkins University; Undergraduate Neuroscience Program
is parent organization of: Bowtie
is parent organization of: FLASH
is parent organization of: TMAJ
is parent organization of: Gastroparesis Clinical Research Consortium
is parent organization of: HPRD - Human Protein Reference Database
is parent organization of: Atlweb: Alternatives to Animal Testing
is parent organization of: Center for Inherited Disease Research
is parent organization of: The Protein Coil Library
is parent organization of: HIV Guide
is parent organization of: Johns Hopkins School of Medicine Department of Molecular and Comparative Pathobiology
is parent organization of: Classic Articles in Visual Perception
is parent organization of: Experimental Man Blog
is parent organization of: MYC Cancer Gene
is parent organization of: JIST: Java Image Science Toolkit
is parent organization of: DOTS WM tract segmentation
is parent organization of: JHU Proj. in Applied Medical Imaging
is parent organization of: LDDMM
is parent organization of: Johns Hopkins Bloomberg School of Public Health; Maryland; USA
is parent organization of: Genetic Resources Core Facility
is parent organization of: LS-SNP/PDB
is parent organization of: JHU Deep Sequencing and Microarray Core
is parent organization of: Glimmer
is parent organization of: Johns Hopkins University Labs and Facilities
is parent organization of: CRAVAT
is parent organization of: John Hopkins University, In-Vivo Cellular Molecular Imaging Center
is parent organization of: RosettaDock
is parent organization of: CoGAPS
is parent organization of: Blox
is parent organization of: National Resource for Quantitative Functional MRI
is parent organization of: Myrna
is parent organization of: CAWorks
is parent organization of: Principal Components Analysis of Scalar, Vector, and Mesh Vertex Data
is parent organization of: Longitudinal MS Lesion Imaging Archive
is parent organization of: Image Synthesis Tools
is parent organization of: Atlases of amygdala and hippocampus for pediatric populations
is parent organization of: HISAT2
is parent organization of: neurodata
is parent organization of: Johns Hopkins University Integrated Imaging Center Core Facility
is parent organization of: Center for Computational Biology at JHU
is parent organization of: TopHat
is parent organization of: PyRosetta
is parent organization of: Ecosystem for Multi-modal Brain-behavior Experimentation and Research
is parent organization of: Brain Observatory Storage Service and Database (BossDB)
is parent organization of: Johns Hopkins University School of Medicine Genetic Resources Core Facility
nlx_97251, , Wikidata: Q193727, GRID: grid.21107.35, ISNI: 0000 0001 2171 931, Crossref Funder ID: 100007880 https://ror.org/00za53h95 SCR_010247 2026-07-25 12:06:56 12
VassarStats
 
Resource Report
Resource Website
500+ mentions
VassarStats (RRID:SCR_010263) software resource Tools for performing statistical computation including: Clinical Research Calculators Probabilities Distributions Frequency Data Proportions Ordinal Data Correlation & Regression t-Tests & Procedures ANOVA ANCOVA has parent organization: Vassar College; New York; USA nlx_156916 SCR_010263 VassarStats: Website for Statistical Computation 2026-07-25 12:06:56 965
TrueSight
 
Resource Report
Resource Website
1+ mentions
TrueSight (RRID:SCR_009835) TrueSight software resource Self-training Algorithm for Splice Junction Detection using RNA-seq. is listed by: OMICtools OMICS_01258 SCR_009835 2026-07-25 12:06:57 2
Swiss Commission for Technology and Innovation
 
Resource Report
Resource Website
1+ mentions
Swiss Commission for Technology and Innovation (RRID:SCR_010084) CTI government granting agency SCR_010084 Commission for Technology and Innovation CTI, Commission for Technology and Innovation, Swiss Commission for Technology Innovation, Swiss Commission for Technology and Innovation CTI 2026-07-25 12:06:56 1
Computational Biology and Functional Genomics Laboratory at Harvard
 
Resource Report
Resource Website
100+ mentions
Computational Biology and Functional Genomics Laboratory at Harvard (RRID:SCR_010240) software resource A computational biology laboratory that builds and redistributes genetic software tools. has parent organization: Harvard University; Cambridge; United States
is parent organization of: GeneSigDB
nlx_156871 SCR_010240 Quackenbush Lab 2026-07-25 12:06:56 221
ABMapper
 
Resource Report
Resource Website
1+ mentions
ABMapper (RRID:SCR_010242) ABMapper software resource A portable, easy-to-use package for spliced alignment, junction site detection, and reads mapping. The core module was written in C++ and wrapped in PERL scripts. is listed by: OMICtools OMICS_01238 SCR_010242 ABMapper: A suffix-array based spliced alignment tool 2026-07-25 12:06:58 1
LifeLegacy Foundation
 
Resource Report
Resource Website
1+ mentions
LifeLegacy Foundation (RRID:SCR_000518) biomaterial supply resource, material resource A non-profit tissue bank that facilitates the distribution of non-transplantable tissue to the medical and research community. It provides snap frozen low post mortem interval (PMI) tissue, normal and diseased tissue, plastinated specimens, anatomical specimens, and specialty specimens. The foundation also works to increase public awareness of research tissue donation for medical research. tissue, bank, medicine, research, body, transplant, biomaterial is listed by: One Mind Biospecimen Bank Listing THIS RESOURCE IS NO LONGER IN SERVICE nlx_37185 SCR_000518 LifeLegacy 2026-07-25 12:12:19 1
University of Michigan Human Breast Cancer Cell Lines
 
Resource Report
Resource Website
1+ mentions
University of Michigan Human Breast Cancer Cell Lines (RRID:SCR_000542) University of Michigan Human Breast Cancer Cell Lines biomaterial supply resource, material resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 1, 2023. Asterand, Inc., the Detroit-based supplier of human tissue products and services, announces the distribution of eleven breast cancer cell lines, derived at the University of Michigan. The University has agreed to license the marketing of the breast cancer cell lines, known as the SUM lines, through Asterand in an effort to provide an exceptional tool to a broad base of researchers studying the disease. There are an estimated 1.2 million new diagnoses worldwide of breast cancer each year. The cell lines can be used to study all aspects of breast cancer biology, from new drug target identification to cell signaling to effects of novel drugs on cellular proliferation. cell line, breast cancer is related to: Asterand
has parent organization: University of Michigan Medical School; Michigan; USA
Breast cancer THIS RESOURCE IS NO LONGER IN SERVICE nlx_84393 SCR_000542 University of Michigan SUM-LINES, University of Michigan Human Breast Cancer Cell Lines (SUM-LINES) 2026-07-25 12:12:18 3
Mexican Health and Aging Study
 
Resource Report
Resource Website
1+ mentions
Mexican Health and Aging Study (RRID:SCR_000818) MHAS biomaterial supply resource, material resource A dataset of a prospective panel study of health and aging in Mexico. The study was designed to ensure comparability with the U.S. Health and Retirement Study in many domains, and the NHANES III. The baseline survey in 2001 is nationally representative of the 13 million Mexicans born prior to 1951. The six Mexican states which are home to 40% of all migrants to the U.S. were over-sampled at a rate of 1.7:1. Spouse/partners of eligible respondents were interviewed also, even if the spouse was born after 1950. Completed interviews were obtained in 9,862 households, for a total of 15,186 individual interviews. All interviews were face-to-face, with average duration of 82 minutes. A direct interview (on the Basic questionnaire) was sought, and Proxy interviews were obtained when poor health or temporary absence precluded a direct interview. Questionnaire topics included the following: * HEALTH MEASURES: self-reports of conditions, symptoms, functional status, hygienic behaviors (e.g., smoking & drinking history), use/source/costs of health care services, depression, pain, reading and cognitive performance; * BACKGROUND: Childhood health and living conditions, education, ability to read/write and count, migration history, marital history; * FAMILY: rosters of all children (including deceased children); for each, demographic attributes, summary indicators of childhood and current health, education, current work status, migration. Parent and sibling migration experiences; * TRANSFERS: financial and time help given to and received by respondent from children, indexed to specific child; time and financial help to parent; * ECONOMIC: sources and amounts of income, including wages, pensions, and government subsidies; type and value of assets. All amount variables are bracketed in case of non-response. * HOUSING ENVIRONMENT: type, location, building materials, other indicators of quality, and ownership of consumer durables; * ANTHROPOMETRIC: for a 20% sub-sample, measured weight, height; waist, hip, and calf circumference; knee height, and timed one-leg stands. Current plans are to conduct another two follow-up surveys in 2012 and 2014 and will field the 3rd and 4th waves of survey data collection in Mexico. For the 2012 wave, interviews will be sought for: every person who was part of the panel in 2003 and their new spouse / partner, if applicable, and a new sample of persons born between 1952 and 1962. For the 2014 wave, we will follow-up the whole sample from 2012. Interviews will be conducted person-to-person. Direct interviews will be sought with all informants, but proxy interviews are allowed for those unable to complete their own interview for health or cognitive reasons. A next-of-kin interview will be completed with a knowledgeable respondent for those who were part of the panel but have died since the last interview. A sub-sample will be selected to obtain objective markers such as blood sample and anthropometric measures. Data Availability: The 2001 baseline data, 2003 follow-up data, and documentation can be downloaded. * Dates of Study: 2001-2003 * Study Features: Longitudinal, International, Anthropometric Measures * Sample Size: 2001: 15,186 (Baseline) Link: * ICPSR: http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/00142 health, mexican, adult human, mexico, longitudinal, international, anthropometric measure, middle adult human, late adult human, interview, survey, spouse, health behavior, health status, childhood, family background, migration, income, housing environment, family life, behavior, housing, living arrangement, mental health, quality of life, questionnaire, disease, disability, economic, family, urban, rural, blood, self-report, chronic condition, symptom report, functionality, cognition, socioeconomic, work history, health insurance, health expenditure, parent, child, household resident, asset, pension, smoking, alcohol use, depressive disorder, pain, reading, education, demographics, employment is listed by: One Mind Biospecimen Bank Listing
is listed by: Inter-university Consortium for Political and Social Research (ICPSR)
has parent organization: University of Texas Medical Branch at Galveston
Aging NIA R01AG018016 Public, Registration is required, Acknowledgement requested nlx_151859 http://www.mhas.pop.upenn.edu/english/home.htm SCR_000818 Mexican Health & Aging Study, Mexican Health and Aging Study (MHAS) 2026-07-25 12:12:19 3

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