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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Biodatomics Resource Report Resource Website 1+ mentions |
Biodatomics (RRID:SCR_010464) | data analysis software, data processing software, software application, software resource | An open source commercial platform for genomic analysis. Included is a home brewed workflow engine and code provenance tracking, no data provenance tracking. Multiple tools like HMMR and Blast are included in the platform with an architecture that allows others to be plugged in and the code to be modified. Data storage is handled by hadoop clusters. | nlx_157693 | SCR_010464 | BioDT | 2026-09-05 06:26:42 | 1 | |||||||||||
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Situation-Based Access Control Ontology Resource Report Resource Website |
Situation-Based Access Control Ontology (RRID:SCR_010429) | SITBAC | controlled vocabulary, data or information resource, ontology | Ontology of context-based healthcare access-control policies. | owl | is listed by: BioPortal | nlx_157588 | SCR_010429 | 2026-09-05 06:26:41 | 0 | |||||||||
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Ontology for Newborn Screening Follow-up and Translational Research Resource Report Resource Website |
Ontology for Newborn Screening Follow-up and Translational Research (RRID:SCR_010389) | ONSTR | controlled vocabulary, data or information resource, ontology | Application ontology covering the domain of newborn screening, follow-up and translational research pertaining to patients diagnosed with inheritable and congenital diseases mainly identified through newborn dried blood spot screening. ONSTR is a central component of the project Newborn Screening Follow-up Data Integration Collaborative (NBSDC), https://nbsdc.org. ONSTR uses the Basic Formal Ontology v2 (BFO2, v2012-07-20) as top-level ontology and extends the classes imported from OBO Foundry ontologies and candidate ontologies. | owl, newborn | is listed by: BioPortal | Inheritable disease, Congenital disease | nlx_157520 | SCR_010389 | 2026-09-05 06:26:40 | 0 | ||||||||
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Santa Barbara Coastal Observation Ontology Resource Report Resource Website |
Santa Barbara Coastal Observation Ontology (RRID:SCR_010424) | OBOE-SBC | controlled vocabulary, data or information resource, ontology | Extensible Observation Ontology for the Santa Barbara Coastal Long Term Ecological Research project (SBC-LTER). It extends core concepts defined in the OBOE suite that are particular to the Santa Barbara Coastal Long Term Ecological Research project''s data collection activities. These include specific measurement protocols, sites, etc. This is meant as a case study ontology for the Semtools project. | owl | is listed by: BioPortal | nlx_157582 | SCR_010424 | 2026-09-05 06:26:41 | 0 | |||||||||
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Semantic Types Ontology Resource Report Resource Website |
Semantic Types Ontology (RRID:SCR_010425) | STY | controlled vocabulary, data or information resource, ontology | Ontology of semantic types. | umls | is listed by: BioPortal | nlx_157584 | SCR_010425 | 2026-09-05 06:26:41 | 0 | |||||||||
|
Semanticscience Integrated Ontology Resource Report Resource Website 1+ mentions |
Semanticscience Integrated Ontology (RRID:SCR_010427) | SIO | controlled vocabulary, data or information resource, ontology | Ontology that provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities. It provides vocabulary for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects. | owl |
is used by: DisGeNET is listed by: BioPortal |
nlx_157586 | SCR_010427 | 2026-09-05 06:26:41 | 1 | |||||||||
|
Ontology of Core Data Mining Entities Resource Report Resource Website |
Ontology of Core Data Mining Entities (RRID:SCR_010393) | ONTODM-CORE | controlled vocabulary, data or information resource, ontology | Generic ontology for the domain of data mining that includes the information processing processes that occur in the domain of data mining, participants in the processes and their specifications. OntoDM is highly transferable and extendable due to its adherence to accepted standards, and compliance with existing ontology resources. The generality in scope allows wide number of applications of the ontology, such as semantic annotation of data mining scenarios, ontology based support for QSARs, etc. | owl | is listed by: BioPortal | nlx_157526 | SCR_010393 | 2026-09-05 06:26:40 | 0 | |||||||||
|
Pediatric Terminology Resource Report Resource Website |
Pediatric Terminology (RRID:SCR_010395) | PEDTERM | controlled vocabulary, data or information resource, ontology | Terms associated with pediatrics, representing information related to child health and development from pre-birth through 21 years of age; contributed by the National Institute of Child Health and Human Development. | owl | is listed by: BioPortal | Aging | nlx_157545 | SCR_010395 | 2026-09-05 06:26:40 | 0 | ||||||||
|
Ontology of Experimental Variables and Values Resource Report Resource Website |
Ontology of Experimental Variables and Values (RRID:SCR_010396) | OOEVV | controlled vocabulary, data or information resource, ontology | Ontology that provides a lightweight representation of the variables used to measure experimental properties and the measurement scales that form the complex data types supporting that data. Many different variables measure the same thing, here they use a lightweight representation driven by a small number of classes and a large number of variables to focus only on providing a vocabulary of variables that may be extended for consolidation to standardized variables for specific things and functions to map between values from different measurements scales. They use the base ontology description to provide a very lightweight representation of the basic elements of an experimental design and they use views to instantiate it for specific domains. | owl | is listed by: BioPortal | nlx_157528 | SCR_010396 | 2026-09-05 06:26:40 | 0 | |||||||||
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Ontology of General Purpose Datatypes Resource Report Resource Website |
Ontology of General Purpose Datatypes (RRID:SCR_010397) | ONTODT | controlled vocabulary, data or information resource, ontology | Ontology that contains entities such as: datatype, datatype generator, datatype quality and others giving the possibility to represent arbitrary complex datatypes. This is an important fact for a general data mining ontology that wants to represent and query over modelling algorithms for mining structured data. The ontology was first developed under the OntoDM (Ontology of Data Mining, http://kt.ijs.si/panovp/OntoDM) ontology, but for generality and reuse purpose it was decided to export it as a separate ontology. Additionaly, the OntoDT ontology is based on and ISO/IEC 11404 (http://www.iso.org/iso/catalogue_detail.htm?csnumber=39479) standard and can be reused used independently by any domain ontology that requires representation and reasoning about general purpose datatypes. | owl | is listed by: BioPortal | nlx_157529 | SCR_010397 | 2026-09-05 06:26:41 | 0 | |||||||||
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Ontology of Alternative Medicine French Resource Report Resource Website |
Ontology of Alternative Medicine French (RRID:SCR_010390) | ONTOMA | controlled vocabulary, data or information resource, ontology | Ontology for common concepts for communication between traditional medicine and western medicine. (In French) | owl | is listed by: BioPortal | nlx_157523 | SCR_010390 | Ontology of Alternative Medicine - French | 2026-09-05 06:26:40 | 0 | ||||||||
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Ontology of Glucose Metabolism Disorder Resource Report Resource Website |
Ontology of Glucose Metabolism Disorder (RRID:SCR_010399) | OGMD | controlled vocabulary, data or information resource, ontology | Ontology including the disease names, phenotypes and their classifications involved in Glucose Metabolism Disorder, Diabetes. (OBO and OWL format are available in sourceforge.) | obo, owl | is listed by: BioPortal | Glucose Metabolism Disorder | nlx_157531 | SCR_010399 | 2026-09-05 06:26:41 | 0 | ||||||||
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Tick Gross Anatomy Ontology Resource Report Resource Website |
Tick Gross Anatomy Ontology (RRID:SCR_010433) | TADS | controlled vocabulary, data or information resource, ontology | Anatomy Ontology of the Tick, Families: Ixodidae, Argassidae | obo | is listed by: BioPortal | nlx_157609 | SCR_010433 | 2026-09-05 06:26:41 | 0 | |||||||||
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Traditional Medicine Constitution Value Set Resource Report Resource Website |
Traditional Medicine Constitution Value Set (RRID:SCR_010435) | TM-CONST | controlled vocabulary, data or information resource, ontology | Ontology of the value set for the constitution property of the International Classification of Traditional Medicine (ICTM). | owl | is listed by: BioPortal | nlx_157612 | SCR_010435 | 2026-09-05 06:26:41 | 0 | |||||||||
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Traditional Medicine Signs and Symptoms Value Set Resource Report Resource Website |
Traditional Medicine Signs and Symptoms Value Set (RRID:SCR_010438) | TM-SIGNS-AND-SYMPTS | controlled vocabulary, data or information resource, ontology | Ontology of the value set for the Signs and Symptoms property of the International Classification of Traditional Medicine (ICTM). | owl | is listed by: BioPortal | nlx_157615 | SCR_010438 | 2026-09-05 06:26:41 | 0 | |||||||||
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Units Ontology Resource Report Resource Website |
Units Ontology (RRID:SCR_010441) | UNITSONT | controlled vocabulary, data or information resource, ontology | A small ontology for the units of measurement developed during the development of the Sleep Domain Ontology (SDO). It supports the use of SDO within the PhysioMIMI application. | owl | is listed by: BioPortal | nlx_157618 | SCR_010441 | 2026-09-05 06:26:41 | 0 | |||||||||
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Units of Measurement Ontology Resource Report Resource Website 1+ mentions |
Units of Measurement Ontology (RRID:SCR_010442) | UO | controlled vocabulary, data or information resource, ontology | Metrical units ontology for use in conjunction with PATO | obo | is listed by: BioPortal | nlx_157619 | SCR_010442 | 2026-09-05 06:26:41 | 1 | |||||||||
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NIF Subcellular Ontology Resource Report Resource Website |
NIF Subcellular Ontology (RRID:SCR_010366) | NIFSUBCELL | controlled vocabulary, data or information resource, ontology | Ontology that contains cell parts and subcellular structures from SAO-CORE and Gene Ontology Cellular Component (GO-CC). http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Subcellular.owl | owl |
is listed by: BioPortal has parent organization: Neuroscience Information Framework |
nlx_157494 | SCR_010366 | Neuroscience Information Framework Subcellular Ontology, Neuroscience Information Framework (NIF) Subcellular Ontology | 2026-09-05 06:26:40 | 0 | ||||||||
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NMR-Instrument Component of Metabolomics Investigations Ontology Resource Report Resource Website 1+ mentions |
NMR-Instrument Component of Metabolomics Investigations Ontology (RRID:SCR_010367) | NMR | controlled vocabulary, data or information resource, ontology | Metabolomics Standards Initiative-sanctioned ontology, created within the COSMOS EU project, to support the nmrML data standard for nuclear magnetic resonance data in metabolomics with meaningful raw data descriptors. | owl, nuclear magnetic resonance, metabolomics |
is listed by: BioPortal is related to: Metabolomics Standards Initiative has parent organization: nmrCV |
nlx_157495 | SCR_010367 | 2026-09-05 06:26:40 | 1 | |||||||||
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Ontology of Homology and Related Concepts in Biology Resource Report Resource Website 1+ mentions |
Ontology of Homology and Related Concepts in Biology (RRID:SCR_010400) | HOM | controlled vocabulary, data or information resource, ontology | Ontology that represents concepts related to homology, as well as other concepts used to describe similarity and non-homology. | obo | is listed by: BioPortal | nlx_157532 | SCR_010400 | 2026-09-05 06:26:41 | 1 |
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