Searching the RRID Resource Information Network

Our searching services are busy right now. Please try again later

  • Register
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X

Leaving Community

Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.

No
Yes

Preparing word cloud

×

SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

Search

Type in a keyword to search

Filter by records added date
See new records

Options


Current Facets and Filters

  • Funding Agency:nih office of the director (facet)

Facets


Recent searches

Snippet view Table view
Click the to add this resource to a Collection

129 Results - per page

Show More Columns | Download 129 Result(s)

Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
AI-READI
 
Resource Report
Resource Website
1+ mentions
AI-READI (RRID:SCR_027031) data or information resource, database, portal, project portal Multidisciplinary data generation project which aims to create and share multimodal dataset optimized for artificial intelligence research in type 2 diabetes. At each release of the AI-READI dataset, two sets will be made available: public access and controlled access set. The public set will be stripped of Protected Health Information (PHI) as well as information related to the sex and race/ethnicity of the participants. Multidisciplinary data generation, create and share multimodal dataset, artificial intelligence, type 2 diabetes, is listed by: NIDDK Information Network (dkNET) NIDDK P30 DK035816;
NIH Bridge2AI Program ;
NIH Office of the Director 1OT2OD032644
PMID:39516364
PMID:39915016
SCR_027031 Artificial Intelligence Ready and Equitable Atlas for Diabetes Insights 2026-08-29 11:35:00 1
Medical University of South Carolina AI High Performance Computing Core
 
Resource Report
Resource Website
Medical University of South Carolina AI High Performance Computing Core (RRID:SCR_028822) access service resource, computational service resource, core facility, service resource Core delivers support, intuitive tools, and broad accessibility for biomedical discovery. Allows teams to move from experimentation to deployment, fostering cross-functional collaboration between AI HPC and the AI Hub, expands access to advanced computing resources, streamline workflows, and empowers a growing network of users. High-performance computer is capable of performing artificial intelligence techniques such as machine learning and deep learning. These resources accelerate healthcare research, help investigators from different fields to work together and share their data and expertise, and ultimately improve population health through rapid translation of research to clinical care. ABRF, computing services, access to advanced computing resources, machine learning, deep learning, is listed by: ABRF CoreMarketplace
has parent organization: Medical University of South Carolina; South Carolina; USA
NIH Office of the Director S10OD034280 ABRF_6122 https://coremarketplace.org/RRID:SCR_028822/?citation=1 SCR_028822 , Medical University of South Carolina AI High Performance Computing Core Facility, AI High-Performance Computing (AI HPC) Core 2026-08-29 11:35:53 0
JAX Cre Repository
 
Resource Report
Resource Website
1+ mentions
JAX Cre Repository (RRID:SCR_005566) Cre Repository biomaterial supply resource, material resource, organism supplier Repository of Cre Driver lines and related information resources. Their services include analysis of Cre line excision function in both target and non-target tissues using Cre reporter lines and presenting the annotated data in the expression data portion of this website, http://cre.jax.org/data.html. cre, cre reporter, organism, cre driver line, cryopreserved, live, cre, cre expression, cre reporter strain, cre strain with floxed allele, image, strain, expression data, neurobiology is listed by: One Mind Biospecimen Bank Listing
is related to: CRE Driver Network
is related to: Allen Institute for Brain Science Transgenic Mouse Study
is related to: Pleiades Promoter Project: Genomic Resources Advancing Therapies for Brain Disorders
is related to: Recombinase (cre) Activity
has parent organization: Jackson Laboratory
Cre, Cre expression, Cre reporter strain, Cre strain with floxed allele NCRR RR001183;
NCRR RR026117;
NCRR RR03 2656;
NIDCR ;
NIH Blueprint for Neuroscience Research ;
NIH Office of the Director DE020052;
NIH Office of the Director OD010972;
NIH Office of the Director OD011190
Public nlx_144662 SCR_005566 Jackson Laboratory Cre Repository, Cre Driver Strain Resources, The Jackson Laboratory Cre Repository 2026-08-29 11:22:18 5
University of Utah Genetic Science Learning Center - Learn Genetics
 
Resource Report
Resource Website
1+ mentions
University of Utah Genetic Science Learning Center - Learn Genetics (RRID:SCR_001910) Learn.Genetics, Learn Genetics data or information resource, narrative resource, slide, training material, training resource, video resource Educational resources that provide accurate and unbiased information about topics in genetics, bioscience and health for global and local audiences. They are jargon-free, target multiple learning styles, and often convey concepts through animation and interactivity. The Genetic Science Learning Center is a science and health education program located in the midst of the bioscience research being carried out at the University of Utah. Our mission is making science easy for everyone to understand. * Two websites, available free of charge to Internet users worldwide: ** Learn.Genetics delivers educational materials on genetics, bioscience and health topics. They are designed to be used by students, teachers and members of the public. The materials meet selected US education standards for science and health. ** Teach.Genetics provides resources for K-12 teachers, higher education faculty, and public educators. These include PDF-based Print-and-Go™ activities, unit plans and other supporting resources. The materials are designed to support and extend the materials on Learn.Genetics. *Professional development programs that update K-16 teachers' expertise in bioscience and health topics as well as prepare them to implement the materials on our websites. * Community programs that engage with diverse communities in discussions about genetics and health, and in developing culturally and linguistically-appropriate educational materials. Some topics in genetics and bioscience research are controversial. The Center does not take sides in political or ethical controversies. Rather, our goal is to provide comprehensive information that promotes a lively discussion of these topics, so that individuals can arrive at their own informed decisions. gene, dna, protein, education, genetics, science, bioscience, health, teacher, student, public, professional development, k-12, undergraduate, lesson plan, heredity, genetic trait, cell, molecule, stem cell, cloning, gene therapy, transgenic mouse, epigentics, addiction, genetic variation has parent organization: University of Utah; Utah; USA
is parent organization of: New Science of Addiction: Genetics and the Brain
NIH Office of the Director R25OD021903 You are granted a revocable license to download and print hard copy versions of the material contained on the site for your personal, Educational and noncommercial use, Provided you do not modify or delete any copyright or other notice that appears on the material you download or print. nif-0000-10482 http://learns.genetics.utah.edu/ SCR_001910 University of Utah Genetic Science Learning Center, Genetic Science Learning Center - Learn.Genetics, Genetic Science Learning Center, Genetic Science Learning Center - Learn Genetics 2026-08-29 11:21:07 9
Rat Resource and Research Center
 
Resource Report
Resource Website
100+ mentions
Rat Resource and Research Center (RRID:SCR_002044) NRRRC, RRRC, NCRR RRRC biomaterial supply resource, cell repository, material resource, organism supplier Supplies biomedical investigators with rat models, embryonic stem cells, related reagents, and protocols they require for their research. In addition to repository, cryostorage and distribution functions, RRRC can facilitate acquisition of rat strains from other international repositories as well as provide consultation and technical training to investigators using rat models. RIN, Resource Information Network, embryo, gamete, animal, drug, biomedical, cryopreserved, disease, genome, genotyping, germplasma, human, hybrid, inbred, infectious, molecular, mutant, nuclear, ovarian, pathogen, rat, research, tissue, rat model, embryonic stem cell, reagent, protocol, cell line, stem cell, strain, database, catalog, RRID Community Authority is listed by: One Mind Biospecimen Bank Listing
is listed by: Resource Information Network
is related to: One Mind Biospecimen Bank Listing
has parent organization: University of Missouri; Missouri; USA
NCRR P40 RR016939;
NIH Office of the Director P40 OD011062
Free nif-0000-12085 http://www.nrrrc.missouri.edu/ SCR_002044 National Rat Resource Research Center, National Center for Research Resources, Rat Resource & Research Center, Rat Resource and Research Center, Rat Resource Research Center, NCRR 2026-08-29 11:21:11 230
Yerkes National Primate Research Center
 
Resource Report
Resource Website
1000+ mentions
Yerkes National Primate Research Center (RRID:SCR_001914) data or information resource, organization portal, portal, service resource Center for advancing scientific understanding and improving the health and well-being of humans and nonhuman primates. The Center conducts research in microbiology and immunology, neurologic diseases, neuropharmacology, behavioral, cognitive and developmental neuroscience, and psychiatric disorders. NPRC, NPRC Consortium, ORIP, alzheimers disease, brain, immunology, microbiology, neurological disease, parkinsons disease, rodent, non human primate, neuropharmacology, cognitive neuroscience, developmental neuroscience, genetics is listed by: National Primate Research Center Consortium
is related to: National Chimpanzee Brain Resource
has parent organization: Emory University; Georgia; USA
has parent organization: National Center for Research Resources - Primate Resources
is parent organization of: Yerkes Collection Non-Human Primate Resource
Neurological disease, Psychiatric disorder, Infectious disease, Non-infectious disease, Drug addiction, Alzheimer's disease, Parkinson's disease, AIDS, Malaria NCRR P51 RR000165;
NIH Office of the Director P51 OD011132;
NIH Office of the Director U42 OD011023
Public, Available to researchers nif-0000-10485 https://orip.nih.gov/comparative-medicine/programs/vertebrate-models SCR_001914 Yerkes Primate Research Center, Yerkes Research Center 2026-08-29 11:21:08 1313
Ambystoma Genetic Stock Center
 
Resource Report
Resource Website
100+ mentions
Ambystoma Genetic Stock Center (RRID:SCR_006372) AGSC biomaterial supply resource, material resource, organism supplier Maintains breeding colony of Mexican axolotls (Ambystoma mexicanum) that distributes axolotl embryos, larvae, and adults to laboratories and classrooms throughout the United States and abroad. Their mission is to serve biology research programs and educators by providing experimental material and expertise and by encouraging and facilitating the exchange of information and ideas. RIN, Resource Information Network, embryo, larvae, adult, k-12 teacher, ambystoma, salamander, RRID Community Authority is used by: Integrated Animals
is listed by: One Mind Biospecimen Bank Listing
is listed by: Resource Information Network
has parent organization: University of Kentucky; Kentucky; USA
NIH Office of the Director P40 OD019794;
NIH Office of the Director R24 OD010435
PMID:16359543 Public. You must be affiliated with an IACUC-sanctioned university or other scientific program to receive animals. No animals will be sold for informal research or personal interest requests. nlx_152125 https://orip.nih.gov/comparative-medicine/programs/vertebrate-models http://www.ambystoma.org/genetic-stock-center SCR_006372 A. mexicanum stock center 2026-08-29 11:22:38 244
Washington National Primate Research Center
 
Resource Report
Resource Website
1+ mentions
Washington National Primate Research Center (RRID:SCR_002761) WaNPRC biomaterial supply resource, material resource, organism supplier Center that aims to provide an environment to support biomedical research directed towards human health issues and nonhuman primate health and biology. To meet this mission, the WaNPRC supports biomedical research activities, professional research staff, specifically bred and maintained nonhuman primate colonies, and dedicated facilities and equipment required for nonhuman primate research protocols. aids, clinical, disease, monkey, developmental biology, functional genomics, immunology, reproduction, biology, neurophysiology, infectious disease, transplantation, stem cell, biology, virology, disease model, animal model, neurobiology, neuroscience, systems biology, baboon, long-tailed macaque, rhesus monkey, live animal, macaca nemestrina, macaca fascicularis, macaca mulatta, papio cynocephalus, papio anubis is listed by: One Mind Biospecimen Bank Listing
has parent organization: University of Washington; Seattle; USA
has parent organization: National Center for Research Resources - Primate Resources
is parent organization of: WaNPRC Pathology and Tissue Program
NCRR ;
NIH Office of the Director P51 OD010425;
NIH Office of the Director U42 OD011123
Free nif-0000-24361 https://orip.nih.gov/comparative-medicine/programs/vertebrate-models http://www.wanprc.org/WaNPRC/index.php SCR_002761 2026-08-29 11:21:19 4
MONARCH Initiative
 
Resource Report
Resource Website
10+ mentions
MONARCH Initiative (RRID:SCR_000824) Monarch data or information resource, database Repository of information about model organisms, in vitro models, genes, pathways, gene expression, protein and genetic interactions, orthology, disease, phenotypes, publications, and authors, and ability to navigate multi-scale spatial and temporal phenotypes across in vivo and in vitro model systems in context of genetic and genomic data, using semantics and statistics. Discovery system provides basic and clinical science researchers, informaticists, and medical professionals with integrated interface and set of discovery tools to reveal genetic basis of disease, facilitate hypothesis generation, and identify novel candidate drug targets. Database that indexes authoritative information on experimental models of disease from MGI, RGD and ZFIN. disease, animal model, phenotype, model organism, in vitro model, gene, pathway, gene expression, protein interaction, genetic interaction, orthology, disease, publication, author, genetic, genomic, model system, genotype, drug, in vivo model uses: Animal QTLdb
uses: Ensembl Variation
uses: Human Phenotype Ontology
is used by: NIF Data Federation
is related to: Mouse Genome Informatics (MGI)
is related to: Rat Genome Database (RGD)
is related to: Zebrafish Information Network (ZFIN)
is related to: openSNP
is related to: Ancora
is related to: PhenoGen Informatics
is related to: Lifespan Observations Database
has parent organization: Oregon Health and Science University; Oregon; USA
is parent organization of: monarch-ontologies
NIH Office of the Director R24 OD011883 PMID:26269093 Free, Freely available r3d100011594, nlx_152525, SCR_001373, nlx_152748 https://orip.nih.gov/comparative-medicine/programs/genetic-biological-and-information-resources, https://doi.org/10.17616/R31M09 SCR_000824 MONARCH Integrated Disease Model, MONARCH Integrated Disease Models View, MONARCH Disease Models View, The MONARCH Initiative 2026-08-29 11:20:31 13
Wisconsin National Primate Research Center
 
Resource Report
Resource Website
1+ mentions
Wisconsin National Primate Research Center (RRID:SCR_012987) WNPRC data or information resource, portal, service resource, topical portal Research center aimed towards increasing understanding of basic primate biology and improving human health and quality of life. Its goals include helping discover treatments, preventative measures and cures for human disease; gathering knowledge of primate biology and ecosystems; providing resources to scientists world wide; and collecting and disseminating research to the larger scientific community and public. NPRC, NPRC Consortium, ORIP, ecosystem, embryonic, fertility, fetal, gene, animal, ctl, development, differentiation, disease, hiv, immunodeficiency, immunogenetic, medicine, metabolic, molecular, neuroendocrinology, obesity, ocular, ovarian, parkinson's disease, polycystic, presbyopia, primate, reproduction, restriction, stem cell, t-cell, vaccine, virology, virus, caloric restriction, obesity, diabetes mellitus, osteoporosis, ocular aging, glaucoma, neurodegeneration, gene expression profiling, simian immunodeficiency virus, cytotoxic t cell, embryonic stem cell, fertility regulation, embryonic differentiation, maternal-fetal health, reproductive neuroendocrinology, polycystic ovarian syndrome, endometriosis, reproductive tract, gene therapy is listed by: Biositemaps
is listed by: National Primate Research Center Consortium
is related to: NIA Nonhuman Primate Tissue Bank
has parent organization: University of Wisconsin-Madison; Wisconsin; USA
is parent organization of: Primate Info Net
is parent organization of: Wisconsin National Primate Research Center Pathology Services Core Facility
Aging NCRR RR000167;
NIH Office of the Director P51 OD011106
Available to the research community nif-0000-24362 https://orip.nih.gov/comparative-medicine/programs/vertebrate-models SCR_012987 2026-08-29 11:24:35 3
neurodata
 
Resource Report
Resource Website
50+ mentions
neurodata (RRID:SCR_014264) data or information resource, data repository, image repository, portal, project portal, service resource, software resource, storage service resource Project portal dedicated to understand animal and machine intelligence and repository of data and tools. Suite of tools to analyze and graph imaging data. Image and data repository for large, publicly available neuro-specific data files and images. Contains tools for analytics, databases, cloud computing, and Web-services applied to both big neuroimages and big neurographs. neuroscience, neuroimage, graph explorer, data repository, johns hopkins university, BRAIN Initiative, FASEB list is related to: Open Connectome Project
has parent organization: Johns Hopkins University; Maryland; USA
DARPA ;
NIBIB R01 EB016411;
NIDA R01 DA036400;
NIH Office of the Director R01 OD19123;
NSF 1707298;
NSF ACI-1261715;
NSF OCI-1040114
Free, Freely available https://neurodata.io/tools/ SCR_014264 2026-08-29 11:24:44 94
National Swine Resource and Research Center
 
Resource Report
Resource Website
50+ mentions
National Swine Resource and Research Center (RRID:SCR_006855) NSRRC biomaterial supply resource, cell repository, material resource, organism supplier Provides access to critically needed swine models of human health and disease as well as a central resource for reagents, creation of new genetically modified swine, and information and training related to use of swine models in biomedical research. RIN, Resource Information Network, pig, fetal fibroblast, live animal, tissue, fibroblast, fetus, genetically modified pig, biomaterial manufacture, genome, genotyping, genetics, reproduction, breeding, health monitoring, cryopreservation, phenotyping, consulting, RRID Community Authority is used by: Integrated Animals
is listed by: One Mind Biospecimen Bank Listing
is listed by: Resource Information Network
is related to: One Mind Biospecimen Bank Listing
has parent organization: University of Missouri; Missouri; USA
NHLBI ;
NIAID ;
NIH Office of the Director U42 OD011140
Public, To investigators, Application required nif-0000-12086 SCR_006855 National Swine Resource Research Center 2026-08-29 11:27:36 79
Baylor College of Medicine Human Genome Sequencing Center
 
Resource Report
Resource Website
50+ mentions
Baylor College of Medicine Human Genome Sequencing Center (RRID:SCR_013605) BCM-HGSC analysis service resource, production service resource, service resource Center for high-throughput DNA sequence generation and the accompanying analysis. The sequence data generated by the center's machines are analyzed in a complex bioinformatics pipeline, and the data are deposited regularly in the public databases at the National Center for Biotechnology Information (NCBI). next-generation sequencing, genetic variation, genome, dna sequence, FASEB list has parent organization: Baylor University; Texas; USA
is parent organization of: Mercury
is parent organization of: xAtlas
NIH Office of the Director R24 OD011173 nif-0000-10162 SCR_013605 Human Genome Sequencing Center, BCM HGSC 2026-08-29 11:30:30 65
Microphysiology Systems Database
 
Resource Report
Resource Website
1+ mentions
Microphysiology Systems Database (RRID:SCR_021126) MPS-Db data or information resource, database Open source database used for analyzing and modeling compound interactions with human and animal organ models.Platform for experimental design, data management, and analysis, and to combine experimental data with reference data, to enable computational modeling. Resource for relating in vitro organ model data to multiple biochemical, preclinical, and clinical data sources on in vivo drug effects. Compound interactions, human organ models, animal organ models, analyzing interactions, modeling interactions, is used by: NIH Heal Project
is listed by: re3data.org
NCATS UH3 TR00503;
NIH Office of the Director S10 OD01226;
U.S. Environmental Protection Agency
PMID:28781990 Free, Freely available SCR_021126 MPS database 2026-08-29 11:30:47 4
Resource for Genetic Epidemiology Research on Adult Health and Aging
 
Resource Report
Resource Website
1+ mentions
Resource for Genetic Epidemiology Research on Adult Health and Aging (RRID:SCR_010472) GERA data or information resource, database Human genetics data from an immense (78,000) and ethnically diverse population available for secondary analysis to qualified researchers through the database of Genotypes and Phenotypes (dbGaP). It offers the opportunity to identify potential genetic risks and influences on a broad range of health conditions, particularly those related to aging. The GERA cohort is part of the Research Program on Genes, Environment, and Health (RPGEH), which includes more than 430,000 adult members of the Kaiser Permanente Northern California system. Data from this larger cohort include electronic medical records, behavioral and demographic information from surveys, and saliva samples from 200,000 participants obtained with informed consent for genomic and other analyses. The RPGEH database was made possible largely through early support from the Robert Wood Johnson Foundation to accelerate such health research. The genetic information in the GERA cohort translates into more than 55 billion bits of genetic data. Using newly developed techniques, the researchers conducted genome-wide scans to rapidly identify single nucleotide polymorphisms (SNPs) in the genomes of the people in the GERA cohort. These data will form the basis of genome-wide association studies (GWAS) that can look at hundreds of thousands to millions of SNPs at the same time. The RPGEH then combined the genetic data with information derived from Kaiser Permanente''s comprehensive longitudinal electronic medical records, as well as extensive survey data on participants'' health habits and backgrounds, providing researchers with an unparalleled research resource. As information is added to the Kaiser-UCSF database, the dbGaP database will also be updated. genotype, phenotype, genome-wide association study, saliva, dna, male, female, health condition, electronic medical record, single nucleotide polymorphism, adult human, late adult human, gene, genome has parent organization: NCBI database of Genotypes and Phenotypes (dbGap)
has parent organization: University of California at San Francisco; California; USA
Aging, Cardiovascular disease, Osteoarthritis, Depressive Disorder, Insomnia, Eye disease, Cancer, Diabetes NIMH ;
NIH Office of the Director ;
NIA AG036607
Application required, Non-commercial, Data Use Certification Agreement nlx_157735 SCR_010472 Genetic Epidemiology Research on Aging 2026-08-29 11:30:32 9
Drosophila RNAi Screening Center
 
Resource Report
Resource Website
1+ mentions
Drosophila RNAi Screening Center (RRID:SCR_000733) DRSC data or information resource, database Database that provides free online tools to users to allow the retrieval of information related to the Drosophila genome and allows access to genome-wide and related cell-based screening of Drosophila at Harvard Medical School (for a fee) . Tools available include SnapDragon, and RNAi designer, a heat map tool for viewing screen data, and gene and amplicon search and download tools. The DRSC mainly exists to provide Drosophila genome screening services, including help with assay development and optimization, data and image analysis, and planning of follow-up assays. genome, screening, drosophila, fly, insect, rnai has parent organization: Harvard University; Cambridge; United States NIH Office of the Director R24 OD011176 PMID:16381918 nif-0000-02846 https://orip.nih.gov/comparative-medicine/programs/genetic-biological-and-information-resources, http://flyRNAi.org/cgi-bin/RNAi_screens.pl SCR_000733 Development of Validated Drosophila in vivo RNAi Models of Human Diseases 2026-08-29 11:29:15 2
Tetrahymena Stock Center
 
Resource Report
Resource Website
50+ mentions
Tetrahymena Stock Center (RRID:SCR_008362) TSC biomaterial supply resource, material resource Centralized repository and distribution site for variety of Tetrahymena strains and species. Maintains diverse array of wild type, mutant, and genetically engineered strains of T. thermophila, the most commonly used laboratory species, and variety of other species derived from both laboratory maintained stocks and wild isolates. All stocks are stored in liquid nitrogen to maintain genetic integrity and prevent senescence. In addition to providing worldwide access to strains currently in collection, TSC continually upgrades collection by accepting deposition of newly developed laboratory strains and well characterized wild isolates collected from clearly defined natural sites. RIN, Resource Information Network, eukaryota, genetics, biology, cell, cellular, culture, model, molecular, protozoan, repository, research, tetrahymena thermophila, RRID Community Authority is used by: Integrated Animals
is listed by: Resource Information Network
has parent organization: Cornell University; New York; USA
NIH Office of the Director P40 OD010964 nif-0000-25476 http://vivo.cornell.edu/individual/vivo/individual27605 SCR_008362 Resource Center For Tetrahymena Thermophila 2026-08-29 11:31:00 89
nanoPOTS
 
Resource Report
Resource Website
1+ mentions
nanoPOTS (RRID:SCR_017129) instrument resource Nanodroplet processing platform for deep and quantitative proteome profiling of 10 to 100 mammalian cells. It enhances efficiency and recovery of sample processing by downscaling processing volumes. nanodroplet, processing, platform, quantitative, proteome, profiling, analysis, mammalian, cell, small, volume has parent organization: Pacific Northwest National Laboratory JDRF ;
NCI R33 CA225248;
NIBIB R21 EB020976;
NIDDK DP3 DK110844;
NIDDK UC4 DK104167;
NIGMS P41 GM103493;
NIH Office Of The Director S10 OD016350
PMID:29491378 SCR_017129 2026-08-29 11:25:26 1
Juicer
 
Resource Report
Resource Website
100+ mentions
Juicer (RRID:SCR_017226) data analysis software, data processing software, software application, software resource Software platform for analyzing kilobase resolution Hi-C data. Open source tool for analyzing terabase scale Hi-C datasets. Allowes to transform raw sequence data into normalized contact maps. analysis, kilobase, resolution, Hi-C, data, terabase, dataset, transform, raw, sequence, normalized, contact, map has parent organization: Baylor College of Medicine; Houston; Texas Cancer Prevention Research Institute of Texas ;
Google Research Award ;
IBM University Challenge Award ;
McNair Medical Institute Scholar Award ;
NHGRI HG003067;
NHGRI HG006193;
NHLBI U01 HL130010;
NIH Office of the Director DP2 OD008540;
NSF PHY-1427654;
NVIDIA Research Center Award ;
PD Soros Fellowship ;
President Early Career Award in Science and Engineering ;
Welch Foundation
PMID:27467249 Free, Available for download, Freely available SCR_017226 2026-08-29 11:25:32 119
Geneshot
 
Resource Report
Resource Website
1+ mentions
Geneshot (RRID:SCR_017582) data access protocol, software resource, web service Software tool as search engine for ranking genes from arbitrary text queries. Enables to enter arbitrary search terms, to receive ranked lists of genes relevant to search terms. Returned ranked gene lists contain genes that were previously published in association with search terms, as well as genes predicted to be associated with terms based on data integration from multiple sources. Search results are presented with interactive visualizations. Ranking, gene, arbitrary, text, query, list, predict, association, data, integration, interactive, visualization, bio.tools is listed by: Debian
is listed by: bio.tools
NCI U24 CA224260;
NHLBI U54 HL127624;
NIGMS T32 GM062754;
NIH Office of the Director OT3OD025467
PMID:31114885 Free, Freely available biotools:Geneshot https://bio.tools/Geneshot SCR_017582 2026-08-29 11:25:45 6

Can't find your Tool?

We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.

Can't find the RRID you're searching for? X
X
  1. PRECISE-TBI Resources

    Welcome to the PRECISE-TBI Resources search. From here you can search through a compilation of resources used by PRECISE-TBI and see how data is organized within our community.

  2. Navigation

    You are currently on the Community Resources tab looking through categories and sources that PRECISE-TBI has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.

  3. Logging in and Registering

    If you have an account on PRECISE-TBI then you can log in from here to get additional features in PRECISE-TBI such as Collections, Saved Searches, and managing Resources.

  4. Searching

    Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:

    1. Use quotes around phrases you want to match exactly
    2. You can manually AND and OR terms to change how we search between words
    3. You can add "-" to terms to make sure no results return with that term in them (ex. Cerebellum -CA1)
    4. You can add "+" to terms to require they be in the data
    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Collections

    If you are logged into PRECISE-TBI you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  6. Facets

    Here are the facets that you can filter the data by.

  7. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.