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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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New York University School of Medicine Langone Health Experimental Pathology Research Laboratory Core Facility Resource Report Resource Website 50+ mentions |
New York University School of Medicine Langone Health Experimental Pathology Research Laboratory Core Facility (RRID:SCR_017928) | access service resource, core facility, service resource | Core provides services, access to instruments, and training to facilitate production of animal tissue samples for morphological and molecular analyses. Supports multiplex immunofluorescence staining, RNA in situ hybridization (ISH), and imaging analysis. Services include tissue preparation, processing, and sectioning, as well as histochemistry and immunohistochemistry of fresh, frozen, and fixed animal tissues, can optimize and validate commercial or proprietary antibodies for chromogenic or fluorescence-based immunohistochemistry including seven-color multiplexing.Provides access to database listing antibodies that have been tested in lab to date and are currently in stock.Offers basic imaging resources and digital whole-slide scanning of stained tissue sections, which allows researchers to view their slides online at their convenience.Researchers can also rent our self-service instruments. These include embedding station, microtome, cryostat, and vibratome. Provides access to brightfield and fluorescence upright and dissecting microscopes,laser capture microdissection scope, and high-throughput multispectral imaging system.To reserve time on instrument, faculty, staff, and investigators must be registered in iLab. | Experimental, pathology, animal, tissue, production, instrument, morphological, molecular, analysis, immunofluorescence, staining, RNA, in situ, hybridization, imaging, analysis, sectioning, tissue, histochemistry, immunochemistry, antibody, listing, imaging, service, core, ABRF, USEDit |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: New York University School of Medicine; New York; USA |
NIH Office of the Director S10 OD021747 | Open | ABRF_823 | https://coremarketplace.org/?FacilityID=823&citation=1 | https://med.nyu.edu/research/scientific-cores-shared-resources/experimental-pathology-research-laboratory | SCR_017928 | NYU Langon Experimental Pathology Research Laboratory, New York University School of Medicine Langone Health Experimental Pathology Research Laboratory | 2026-08-29 11:33:19 | 53 | |||||
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Baylor College of Medicine RNA In Situ Hybridization Core Facility Resource Report Resource Website |
Baylor College of Medicine RNA In Situ Hybridization Core Facility (RRID:SCR_017856) | access service resource, core facility, service resource | Core performs non-radioactive, RNA in situ hybridization (ISH) on tissue sections. Provides services including: collecting animal tissue specimens, preparation of frozen and paraffin sections, preparation of RNA probes from customer templates, conducting high-throughput ISH, and documentation and quantification of expression patterns by microscopy. We also do X-gal and Cresyl Violet staining on sections. For human studies, customers must provide tissue sections. | RNA, in situ, hybridization, non radioactive, tissue, selection, collection, animal, speciment, preparation, frozen, paraffin, RNA, probe, custom, template, high, throughput, ISH, exrpession, pattern, documentation, microscopy, X-gal, Crystal Violet, staining, section, service, core | NICHD U54 HD083092; NIH Office of the Director S10 OD016167 |
Open | ABRF_671 | SCR_017856 | RNA In Situ Hybridization | 2026-08-29 11:33:18 | 0 | ||||||||
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New York University School of Medicine Langone Health Precision Immunology Laboratory Core Facility Resource Report Resource Website 1+ mentions |
New York University School of Medicine Langone Health Precision Immunology Laboratory Core Facility (RRID:SCR_017936) | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on November 20,2025. Core to study immune cell phenotype and function, characterizes antitumor immune responses, determines mechanisms of immune escape and evasion, and develops biomarkers that predict patient outcomes or possible toxicities. Offers services for immune monitoring,provides expert knowledge that guides choice of technologies used for study, coordinates purchase, quality control, and use of reagents. Stand-alone services include high-quality cell processing and storage to support correlative studies. These services allow convenient batched analysis of trial samples.Staff purifies peripheral blood mononuclear cells daily from clinic visits and another staff member is available for on-demand and after-hours processing. Samples are cryopreserved on-site in temperature-monitored LN2 freezers for short-term storage. For long-term storage, samples are transferred to Novare Biologistics,off-site cGMP-compliant, New York State-licensed, and FDA-registered biorepository. Routinely assess quality of processing and cryopreservation. Core meets performance targets for cell viability and recovery necessary for certification by Integrated Biobank of Luxembourg. Offers service for isolating tumor-infiltrating lymphocytes using dissociation protocols optimized for various tumor tissues. Offers flow cytometry at Perlmutter Cancer Center, along with expert service and training. Sterile fluorescence-activated cell sorting (17 colors) is routinely performed with options for high-speed (50K cells per second), single-cell deposition (into polymerase chain reaction plates), and BSL-3 sorting for unscreened or infected human material. Data analysis workstations are also available.Offers single-cell analysis through our cutting-edge 30-parameter flow cytometry technology and Integrated Molecular Cytometry Platforms (IMCPs). | Immune, cell, phenotype, antitumor, response, mechanism, escape, evasion, biomarker, predict, patient, toxicity, monitoring, processing, storge, periferal, blood, mononuclear, biorespository, service, core, ABRF, USEDit |
is listed by: ABRF CoreMarketplace has parent organization: New York University School of Medicine; New York; USA |
NIH Office of the Director S10 OD016425 | THIS RESOURCE IS NO LONGER IN SERVICE. | ABRF_833 | https://coremarketplace.org/?FacilityID=833&citation=1 | SCR_017936 | New York University School of Medicine Langone Health Precision Immunology Laboratory, NYU Langone Immune Monitoring Laboratory, NYU Langone Precision Immunology Laboratory | 2026-08-29 11:33:03 | 3 | ||||||
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Northwestern University Proteomics Core Facility Resource Report Resource Website 10+ mentions |
Northwestern University Proteomics Core Facility (RRID:SCR_017945) | access service resource, core facility, service resource | Core offers multiple types of experiments from simple protein identification to protein quantitation. Performs traditional bottom-up proteomics, where proteins are digested with enzyme prior to analysis and intact, top-down proteomics analyses. Services include proteins identification after in-gel or in-solution digestion, top-down mass spectrometry to preserve post-translationally modified forms of proteins present in vivo by measuring them intact, IP-MS Pulldown,BioID service to identify target of biotin ligase that has been tagged onto their protein via traditional cloning methods,Untargeted Quantitative Peptide Proteomics,Targeted Quantitative Peptide Proteomics,Epiproteomic Histone Modification Panel A,Epiproteomic Histone Modification Panel B,Untargeted Metabolomics,Phosphoproteomics,PTM Scan,ChIP-MS. | Protein, indentification, quantitation, proteomics, analysis, enzyme, digestion, mass, spectrometry, peptide, targeted, epiproteomic, histone, modification, untargeted, phosphoproteomics, PTM Scan, ChIP-MS, service, core, ABRF |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: Northwestern University; Illinois; USA |
NCI P30 CA060553; NIGMS P41 GM108569; NIH Office of the Director S10 OD025194 |
Open | SCR_017880, ABRF_944 | https://coremarketplace.org/?FacilityID=944 | https://coremarketplace.org/?FacilityID=738 | SCR_017945 | Northwestern Proteomics, Northwestern University Proteomics Center of Excellence Core Facility | 2026-08-29 11:33:19 | 10 | |||||
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Vermont University Larner College of Medicine Microscopy Imaging Center Core Facility Resource Report Resource Website 50+ mentions |
Vermont University Larner College of Medicine Microscopy Imaging Center Core Facility (RRID:SCR_018821) | MIC | access service resource, core facility, service resource | Core provides imaging equipment including JEOL 1400 transmission electron microscope with AMT 11 megapixel digital camera,JEOL JSM 6060 scanning electron microscope with attached Oxford INCA energy dispersive spectroscopy detector for element analysis,Nikon Air HD confocal scanning laser microscope, Nikon C2 confocal scanning laser microscope, Andor Spinning Disk confocal microscope, Zeiss LSM 7 Multiphoton confocal microscope, Nikon STORM super-resolution light microscope, Olympus BX50 research microscope for transmitted light, phase contrast, and epi-fluorescence microscopy, Asylum Research MFP-3D BIO atomic force microscope, Asylum Research Cypher Environmental atomic force microscope,Arcturus XT-Ti Laser Capture Microdissector system, Olympus IX70 inverted microscope with associated Applied BioPhysics Electri Cell-Substrate Impedance Sensing (ECIS Ztheta) system, Leica VERSA 8 whole slide imager, Dell workstations containing Molecular Devices MetaMorph image analysis software for complex quantitative image analysis, Indica Labs HALO software, Improvision Volocity, MBR StereoInvestigator. | USEDit, microscopy imaging, transmission electron microscope, microscope, image analysis service, ABRF |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: University of Vermont; Vermont; USA |
NCRR S10RR025498; NIH Office of the Director 1S10OD025030 |
Open | ABRF_22 | https://coremarketplace.org/?FacilityID=22 | SCR_018821 | , UVM - Microscopy Imaging Center, Vermont University Larner College of Medicine Microscopy Imaging Center, University of Vermont Larner College of Medicine Microscopy Imaging Center | 2026-08-29 11:33:05 | 60 | |||||
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WormGUIDES Resource Report Resource Website 1+ mentions |
WormGUIDES (RRID:SCR_013733) | atlas, data or information resource | A worm atlas that provides an interactive 4D atlas of nuclear positions, from zygote until hatching which can be used to guide cell identification. The tools enable examination of the connectome during development from integrate knowledge of C. elegans embryogenesis to widely used resources, such as WormAtlas and WormBase. | embryogenesis, development, neural connectivity, diSPIM, 4d atlas, c elegans | has parent organization: Yale University; Connecticut; USA | NIH Office of the Director R24 OD016474 | Free, Public, Requires Java | SCR_014203 | https://orip.nih.gov/comparative-medicine/programs/invertebrate-models, http://www.wormguides.org/wormguides | SCR_013733 | Global Understanding in Dynamic Embryonic Systems | 2026-08-29 11:30:43 | 4 | ||||||
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EchinoBase Resource Report Resource Website 100+ mentions |
EchinoBase (RRID:SCR_013732) | data or information resource, database | Database that provide a genomic information and comparative genomics platform on sea urchins and related echinoderms. It provide collection of information to directly support experimental work on these useful research models in cell and developmental biology. | sea urchins, echinoderms, genome, FASEB list | NIH Office of the Director P40 OD010959 | PMID:19010966 | Free, Public | https://orip.nih.gov/comparative-medicine/programs/genetic-biological-and-information-resources | SCR_013732 | SpBase, Echinoderm genomic database, Gene Library Resource for the Sea Urchin Strongylocentrotus purpuratus, Sea Urchin Genome Database, Echino Base | 2026-08-29 11:30:30 | 108 | |||||||
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Enhanced and Unified Anatomical Labeling for Common Mouse Brain Atlas Resource Report Resource Website 1+ mentions |
Enhanced and Unified Anatomical Labeling for Common Mouse Brain Atlas (RRID:SCR_019267) | atlas, data or information resource | Website to visualize and share anatomical labels. Franklin and Paxinos (FP) based anatomical labels in Allen Common Coordinate Framework (CCF). Cell type specific transgenic mice and MRI atlas were used to adjust and further segment labels. New segmentations were created in dorsal striatum using cortico-striatal connectivity data. Anatomical labels were digitized based on Allen ontology, and web-interface was created for easy visualization. These labels provide resource to isolate and identify mouse brain anatomical structures. Open source data sharing will facilitate further refinement of anatomical labels and integration of data interpretation within single anatomical platform. | Anatomical labels, Allen Common Coordinate Framework, Franklin and Paxinos labels, MRI atlas, segment labels, transgenic mice, dorsal striatum, cortico-striatal connectivity data, mouse brain anatomical structure |
is used by: BICCN is related to: Allen Institute for Brain Science |
NIH Office of the Director R24 OD018559; NIMH R01 MH116176; NINDS R01 NS10 8407; Pennsylvania Department of Health |
PMID:31699990 | Free, Freely available | SCR_019267 | 2026-08-29 11:30:29 | 2 | ||||||||
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Primate Embryo Gene Expression Resource Resource Report Resource Website 1+ mentions |
Primate Embryo Gene Expression Resource (RRID:SCR_002765) | PREGER | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 14,2026. Sample collection of oocytes obtained from various sized antral follicles, and embryos obtained through a variety of different protocols. The PREGER makes it possible to undertake quantitative gene-expression studies in rhesus monkey oocytes and embryos through simple and cost-effective hybridization-based methods. | primate, embryo, gene, expression, embryologist, microarray, rhesus, monkey, oocyte, embryo, cdna, library, molecular, analysis, stem cell, oocyte quality, preimplantation development, transcription |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Temple University School of Medicine; Pennsylvania; USA |
NCRR RR15253; NIH Office of the Director R24 OD012221 |
PMID:14724133 PMID:17147927 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-24366 | https://orip.nih.gov/comparative-medicine/programs/genetic-biological-and-information-resources | SCR_002765 | PREGER Online, Preger.org | 2026-08-29 11:30:41 | 6 | ||||
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Penn State Hershey College of Medicine Atomic Force Microscopy Core Facility Resource Report Resource Website 1+ mentions |
Penn State Hershey College of Medicine Atomic Force Microscopy Core Facility (RRID:SCR_025075) | access service resource, core facility, service resource | Provides College of Medicine research community with access to atomic force microscopy equipment and expertise. | ABRF, atomic force microscopy services, |
is listed by: ABRF CoreMarketplace has parent organization: Pennsylvania State Hershey College of Medicine; Pennsylvania; USA |
NIH Office of the Director S10 OD030279 | ABRF_2637 | https://coremarketplace.org/?FacilityID=2637&citation=1 | SCR_025075 | Hershey College of Medicine Atomic Force Microscopy Core Facility, Atomic Force Microscopy Core | 2026-08-29 11:33:42 | 3 | |||||||
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ColabFold Resource Report Resource Website 100+ mentions |
ColabFold (RRID:SCR_025453) | software resource, source code | Software application offers accelerated prediction of protein structures and complexes by combining homology search of MMseqs2 with AlphaFold2 or RoseTTAFold. Used for protein folding. | prediction of protein structures and complexes, protein folding, protein structure prediction, | Max Planck Society ; National Research Foundation of Korea ; NIAID R21AI156595; NIH Office of the Director DP5OD026389; NSF ; Seoul National University ; University of Göttingen |
PMID:35637307 | Free, Available for download, Freely available | https://github.com/sokrypton/ColabFold/blob/main/AlphaFold2.ipynb | SCR_025453 | 2026-08-29 11:34:02 | 493 | ||||||||
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Dartmouth Genomics and Molecular Biology Shared Resource (GMBSR) Resource Report Resource Website 50+ mentions |
Dartmouth Genomics and Molecular Biology Shared Resource (GMBSR) (RRID:SCR_021293) | access service resource, core facility, service resource | Genomics Section provides services and instrumentation that enable DNA/RNA extraction and quality control, next-generation Illumina and Nanopore sequencing, epigenetic profiling, and microarray analysis on a whole-genome scale, from the level organisms to single cells. Molecular Biology Section provides DNA fragment analysis qPCR, Sanger sequencing and NanoString Technology. | USEDit, ABRF, DNA fragment analysis qPCR, Sanger sequencing, NanoString Technology, |
is listed by: ABRF CoreMarketplace has parent organization: Dartmouth College; New Hampshire; USA |
NCI 5P30CA023108; NIGMS P20GM130454; NIH Office of the Director 1S10OD030242; NIH Office of the Director S10OD025235 |
ABRF_995 | https://coremarketplace.org/?FacilityID=995 | SCR_021293 | Molecular Biology Resource, Molecular Biology Shared Resource | 2026-08-29 11:33:24 | 62 | |||||||
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University of Hawaii at Manoa Microscopy, Imaging, and Flow Cytometry Core Facility Resource Report Resource Website |
University of Hawaii at Manoa Microscopy, Imaging, and Flow Cytometry Core Facility (RRID:SCR_021753) | access service resource, core facility, service resource | Core offers optical analysis instrumentation from specialized light microscopes to bioluminescence preclinical imagers to flow cytometers for multicolor cellular analysis. Services include high resolution optical sectioning of fixed cells and tissues, time lapse imaging of living cell cultures, non invasive monitoring of tumor formation in preclinical studies, and extracting specific cells of interest from tissue samples. | USEDit, ABRF, optical analysis instrumentation, specialized light microscopes, bioluminescence preclinical imagers, flow cytometers, multicolor cellular analysis |
is listed by: ABRF CoreMarketplace has parent organization: University of Hawaii at Manoa |
NIH Office of the Director ODO28515 | ABRF_1220 | https://coremarketplace.org/?FacilityID=1220 | SCR_021753 | and Flow Cytometry Core, Imaging, UHCC Microscopy | 2026-08-29 11:33:23 | 0 | |||||||
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University of California at Berkeley QB3 Genomics Core Facility Resource Report Resource Website 100+ mentions |
University of California at Berkeley QB3 Genomics Core Facility (RRID:SCR_022170) | access service resource, core facility, service resource | Partnership between Vincent J. Coates Genomics Sequencing Laboratory,Functional Genomics Laboratory, and Computational Genomics Resource Laboratory. Offers consultation on experimental design and data analysis, full suite of technical services related to high throughput sequencing and genomics experiments, and access to high performance computational infrastructure. | USEDit, ABRF, genomics research, high throughput sequencing and genomics experiments, high performance computational infrastructure access |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: University of California at Berkeley; Berkeley; USA |
NIH Office of the Director OD018174 | ABRF_1346 | https://coremarketplace.org/?FacilityID=1346 | SCR_022170 | University of California at Berkeley UCB-QB3 Genomics, UCB-QB3 Genomics | 2026-08-29 11:33:27 | 102 | |||||||
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University of Nebraska Medical Center Advanced Microscopy Core Facility Resource Report Resource Website 10+ mentions |
University of Nebraska Medical Center Advanced Microscopy Core Facility (RRID:SCR_022467) | access service resource, core facility, service resource | Facility houses imaging technologies ranging from super resolution (~ 0.120 um to 0.020 um) to microscopic (~ 0.300 um) to mesoscopic (~ 1 um) biomedical imaging. Imaging specialists provide training and/or actively assist researchers collecting images across imaging instrumentation. Instrumentation includes Zeiss ELYRA PS.1 is inverted microscope for super resolution (SR) structured illumination microscopy (SIM) and single molecule localization microscopy (SMLM) including, PhotoActivated Localization Microscopy (PALM) using photo switchable/convertible fluorescent proteins, Total Internal Reflection Fluorescence (TIRF) and STochastic Optical Reconstruction Microscopy (STORM);Zeiss 800 CLSM with Airyscan is an inverted microscope dramatically increasing conventional confocal image resolution to ~180 nm using Airyscan technology; Zeiss 710 LSM is inverted microscope supporting most basic imaging applications, multi channel and spectral, co localization, live cell, 3D, and time series imaging; Zeiss Celldiscoverer 7 is widefield imaging system for automated, time lapse imaging of live samples; Zeiss Axioscan 7 is high performance whole slide scanning system for fluorescence, brightfield, and polarization imaging;Miltenyi Biotec Ultramicroscope II Light Sheet fluorescence microscope (LSFM) extends fluorescent imaging into true 3D, large scale volumetric imaging of intact tissues, organs, and small organisms. AMCF also houses several high-end data analysis workstations with premier image analysis software including HALO (Indica Labs) and IMARIS (Oxford Instruments) facilitating data rendering, analyses, and presentation options. | USEDit, ABRF, biomedical imaging, microscopy |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: University of Nebraska; Nebraska; USA |
NCI CA036727; NCRR RR027301; NIGMS GM103427; NIGMS GM106397; NIH Office of the Director OD030486 |
open | ABRF_1375 | https://coremarketplace.org/?FacilityID=1375&citation=1 | SCR_022467 | UNMC Advanced Microscopy Core Facility | 2026-08-29 11:33:15 | 23 | ||||||
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University of Texas Southwestern Medical Center Quantitative Light Microscopy Core Facility Resource Report Resource Website 1+ mentions |
University of Texas Southwestern Medical Center Quantitative Light Microscopy Core Facility (RRID:SCR_022605) | QLMC | access service resource, core facility, service resource | Provides access to variety of microscope modalities including laser scanning and spinning disk confocal, multiphoton, wide field deconvolution, CFP/YFP FRET, TIRF, single molecule imaging, and more. Offers customized microscopy training, advise and help with sample preparation, image quantification, and offer basic microscope maintenance. Can streamline your data handling and image visualization as well as automate your image analysis workflow through customized Fiji macros. | Light microscopy, laser scanning and spinning disk confocal, multiphoton, wide field deconvolution, CFP/YFP FRET, TIRF, single molecule imaging, ABRF, USEDit |
is related to: USEDit has parent organization: University of Texas Southwestern Medical Center; Texas; USA |
NCI 1P30 CA142543; NCRR 1S10 RR029731; NIH Office of the Director 1S10 OD021684; NIH Office of the Director 1S10OD028630 |
Restricted | SCR_022605 | Quantitative Light Microscopy Core | 2026-08-29 11:33:28 | 2 | |||||||
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La Jolla Institute for Immunology Next Generation Sequencing Core Facility Resource Report Resource Website 1+ mentions |
La Jolla Institute for Immunology Next Generation Sequencing Core Facility (RRID:SCR_023107) | access service resource, core facility, service resource | Core provides latest sequencing technology combined with Institute's expansive bioinformatics capabilities. Provides instrumentation including Illumina Miseq, Covaris Model E220, NovaSeq 6000, Agilent 2200 Tapestation, Beckman Coulter Biomek FXP, HiSeq 2500. | ABRF, USEDit, Next Generation Sequencing, sequencing technology |
is related to: USEDit has parent organization: La Jolla Institute for Immunology |
NIH Office of the Director S10OD016262; NIH Office of the Director S10OD025052 |
Open | SCR_023107 | La Jolla Institute for Immunology Next Generation Sequencing Facility | 2026-08-29 11:33:34 | 9 | ||||||||
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T Cell ExTRECT Resource Report Resource Website 1+ mentions |
T Cell ExTRECT (RRID:SCR_027742) | software resource, software toolkit, source code | Software R package to calculate T cell fractions from WES data from hg19 or hg38 aligned genomes. | T-cell, T cell receptor excision circle, WES data, hg19 or hg38 aligned genomes, | NCATS UL1TR000100; NCI P30CA023100; NCI R21CA177519; NCI U01CA196406; NHLBI U54HL108460; NIH Office of the Director DP5OD017937; NLM T15LM011271; NSF |
PMID:34497419 | Free, Available for download, Freely available | SCR_027742 | , T cell exome TREC, T cell exome T cell Receptor Excision Circle | 2026-08-29 11:35:30 | 1 | ||||||||
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Drugmonizome Resource Report Resource Website 1+ mentions |
Drugmonizome (RRID:SCR_024821) | data or information resource, database | Database with search engine for querying annotated sets of drugs and small molecules for performing drug set enrichment analysis. | annotated sets of drugs and small molecules, searching of annotated sets of drugs and small molecules, drugs, small molecules, | NCI U24CA224260; NHLBI U54HL127624; NIH Office of the Director OT2OD030160 |
PMID:33787872 | Free, Freely available | SCR_024821 | 2026-08-29 11:33:44 | 1 | |||||||||
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Daphnia Atlas Resource Report Resource Website 1+ mentions |
Daphnia Atlas (RRID:SCR_024913) | atlas, data or information resource, reference atlas | Whole organism atlas utilizing 2D and 3D imaging. Atlas at cellular resolution serves as foundation for characterization of tissue and cellular change in Daphnia. | Whole organism atlas, Daphnia, characterization of tissue and cellular change, 2D imaging, 3D imaging, | European Unions Horizon 2020 ; NIH Office of the Director R24OD18559; Penn State Human Health and Environment Seed Grant ; Pennsylvania Department of Health Commonwealth Universal Research Enhancement Program Grant |
DOI:10.1101/2022.03.09.483544 | Free, Freely available, | SCR_024913 | 2026-08-29 11:33:37 | 1 |
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