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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Amphibian Gross Anatomy Ontology Resource Report Resource Website 1+ mentions |
Amphibian Gross Anatomy Ontology (RRID:SCR_010291) | AAO | controlled vocabulary, data or information resource, ontology | A structured controlled vocabulary of the anatomy of Amphibians. Note that AAO is currently being integrated into Uberon. | obo | is listed by: BioPortal | nlx_157316 | SCR_010291 | 2026-09-05 06:26:38 | 1 | |||||||||
|
Disease core ontology applied to Rare Diseases Resource Report Resource Website |
Disease core ontology applied to Rare Diseases (RRID:SCR_010308) | HRDO | controlled vocabulary, data or information resource, ontology | A core ontology consistent with a metamodel (disorders and groups of disorders, genes, clinical signs and their relations) and an instantiation of this metamodel with Orphanet Data (available on http://orphadata.org). Research experiments demonstrated (i) efficient classifications generation based on SPARQL Construct, (ii) perspectives in semantic audit of a knowledge base, (iii) semantic comparison with OMIM (www.omim.org) using proximity measurements and (iv) opened perspectives in knowledge sharing (LORD, http://lord.bndmr.fr). Current production services of Orphanet developed ORDO, released in 2014, an ontology synchronized with their production database. | owl |
is listed by: BioPortal is related to: Orphanet |
INSERM | nlx_157388 | SCR_010308 | 2026-09-05 06:26:38 | 0 | ||||||||
|
San Diego State University; California; USA Resource Report Resource Website 1+ mentions |
San Diego State University; California; USA (RRID:SCR_009874) | SDSU | university | Public research university in San Diego, California. Founded in 1897 as San Diego Normal School, it is the third-oldest university in the 23-member California State University system. | is parent organization of: PRINSEQ | nlx_156724, Wikidata:Q913861, ISNI:0000 0001 0790 1491, Crossref funder ID:100007099, grid.263081.e | https://ror.org/0264fdx42 | SCR_009874 | San Diego State University | 2026-09-05 06:26:36 | 1 | ||||||||
|
IsoEM Resource Report Resource Website 10+ mentions |
IsoEM (RRID:SCR_009993) | IsoEM | software resource | Software package that can be used to infer isoform and gene expression levels from high-throughput transcriptome sequencing (RNA-Seq) data. | bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: University of Connecticut; Connecticut; USA |
biotools:isoem, OMICS_01278 | https://bio.tools/isoem | SCR_009993 | 2026-09-05 06:26:36 | 10 | ||||||||
|
Centre for Reviews and Dissemination Resource Report Resource Website 10+ mentions |
Centre for Reviews and Dissemination (RRID:SCR_010267) | CRD | institution | A research department of the University of York provides research-based information about the effects of health and social care interventions via their databases. The institute undertakes systematic reviews evaluating research evidence on health and public health questions of national and international importance. | evidence review, research review, public health, evidence synthesis, FASEB list | is related to: PROSPERO | National Institute for Health Research UK | Public, Available to the research community | nlx_156926 | http://www.york.ac.uk/ | SCR_010267 | University of York Centre for Reviews and Dissemination | 2026-09-05 06:26:38 | 40 | |||||
|
Current Procedural Terminalogy Hierarchy Resource Report Resource Website |
Current Procedural Terminalogy Hierarchy (RRID:SCR_010300) | CPTH | controlled vocabulary, data or information resource, ontology | Metathesaurus of current procedural terminalogy (CPT). | umls | is listed by: BioPortal | nlx_157379 | SCR_010300 | 2026-09-05 06:26:38 | 0 | |||||||||
|
Dengue Fever Ontology Resource Report Resource Website |
Dengue Fever Ontology (RRID:SCR_010304) | IDODEN | controlled vocabulary, data or information resource, ontology | An ontology for dengue fever. | owl | is listed by: BioPortal | Dengue fever | nlx_157383 | http://code.google.com/p/dengue-fever-ontology/ | SCR_010304 | 2026-09-05 06:26:38 | 0 | |||||||
|
Dermatology Lexicon Resource Report Resource Website |
Dermatology Lexicon (RRID:SCR_010305) | DERMLEX | controlled vocabulary, data or information resource, ontology | A standardized terminology of dermatologic diagnoses, therapies, procedures, and laboratory tests. | owl | is listed by: BioPortal | nlx_157384 | SCR_010305 | 2026-09-05 06:26:38 | 0 | |||||||||
|
Diagnosis Ontology of Clinical Care Classification Resource Report Resource Website |
Diagnosis Ontology of Clinical Care Classification (RRID:SCR_010306) | DOCCC | controlled vocabulary, data or information resource, ontology | Diagnosis ontology of clinical care classification. | owl | is listed by: BioPortal | nlx_157385 | SCR_010306 | 2026-09-05 06:26:38 | 0 | |||||||||
|
Phyre Resource Report Resource Website 500+ mentions |
Phyre (RRID:SCR_010270) | algorithm | A structure prediction system to reliably detect remote homologies. | has parent organization: Imperial College London; London; United Kingdom | PMID:19247286 | nlx_156932 | SCR_010270 | Protein Homology/Anology Recognition Engine | 2026-09-05 06:26:38 | 758 | |||||||||
|
BIOBASE Corporation Resource Report Resource Website 100+ mentions |
BIOBASE Corporation (RRID:SCR_010271) | commercial organization | THIS RESOURCE IS OUT OF SERVICE, documented on February 1st,2022. BIOBASE offers academic and non-profit organizations free access to TRANSFAC?? non-professional version with much reduced functionality and content compared to our professional database. | FASEB list |
is related to: Human Gene Mutation Database is parent organization of: Genome Trax is parent organization of: TRANSPATH is parent organization of: Gene Regulation Programs is parent organization of: TRANSCompel is parent organization of: Gene Regulation Databases |
THIS RESOURCE IS OUT OF SERVICE | nlx_156933 | SCR_010271 | 2026-09-05 06:26:38 | 184 | |||||||||
|
Bionutrition Ontology Resource Report Resource Website 1+ mentions |
Bionutrition Ontology (RRID:SCR_010272) | BNO | controlled vocabulary, data or information resource, ontology | Ontology that relates concepts and terminologies used for human nutrition in a clinical and biomedical setting. | owl | is listed by: BioPortal | nlx_157337 | SCR_010272 | 2026-09-05 06:26:38 | 1 | |||||||||
|
HHpred Resource Report Resource Website 1000+ mentions |
HHpred (RRID:SCR_010276) | data or information resource, database, software resource | The primary aim in developing HHpred was to provide biologists with a method for sequence database searching and structure prediction that is as easy to use as BLAST or PSI-BLAST and that is at the same time much more sensitive in finding remote homologs. In fact, HHpred''s sensitivity is competitive with the most powerful servers for structure prediction currently available. HHpred is the first server that is based on the pairwise comparison of profile hidden Markov models (HMMs). Whereas most conventional sequence search methods search sequence databases such as UniProt or the NR, HHpred searches alignment databases, like Pfam or SMART. This greatly simplifies the list of hits to a number of sequence families instead of a clutter of single sequences. All major publicly available profile and alignment databases are available through HHpred. | nlx_156935 | SCR_010276 | Homology detection & structure prediction by HMM-HMM comparison | 2026-09-05 06:26:38 | 1032 | |||||||||||
|
BitSeq Resource Report Resource Website 10+ mentions |
BitSeq (RRID:SCR_009904) | BitSeq | software resource | A software application for inferring expression levels of individual transcripts from sequencing (RNA-Seq) data and estimating differential expression (DE) between conditions. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
DOI:10.1093/bioinformatics/btv483 DOI:10.1093/bioinformatics/bts260 |
, OMICS_01269, biotools:bitseq | https://bio.tools/bitseq, https://sources.debian.org/src/bitseq/, | SCR_009904 | 2026-09-05 06:26:36 | 20 | |||||||
|
U.S. Department of Labor Resource Report Resource Website 1+ mentions |
U.S. Department of Labor (RRID:SCR_010157) | DOL | institution | Fosters, promotes, and develops the welfare of the wage earners, job seekers, and retirees of the United States; improves working conditions; advances opportunities for profitable employment; and assures work-related benefits and rights. | grid.420412.1, nlx_151864, ISNI: 0000 0001 2097 824X, Wikidata: Q628807, Crossref funder ID: 100000778 | https://ror.org/05mbkbj54 | SCR_010157 | US Dept. of Labor, US DOL, US Department of Labor, United States Department of Labor | 2026-09-05 06:26:37 | 1 | |||||||||
|
BioTop Ontology Resource Report Resource Website 1+ mentions |
BioTop Ontology (RRID:SCR_010039) | BT | controlled vocabulary, data or information resource, ontology | A top-domain ontology that provides definitions for the foundational entities of biomedicine as a basic vocabulary to unambiguously describe facts in this domain. It can furthermore serve as top-level model for creating new ontologies for more specific domains or as aid for aligning or improving existing ones. | owl | is listed by: BioPortal | nlx_157329 | http://purl.org/biotop | SCR_010039 | 2026-09-05 06:26:36 | 1 | ||||||||
|
Eligibility Feature Hierarchy Resource Report Resource Website |
Eligibility Feature Hierarchy (RRID:SCR_010314) | ELIG | controlled vocabulary, data or information resource, ontology | A set of 1,437 eligibility features that were organized into a feature hierarchy using 80 breast cancer trials. | owl | is listed by: BioPortal | Breast cancer | nlx_157395 | SCR_010314 | 2026-09-05 06:26:39 | 0 | ||||||||
|
Enzyme Mechanism Ontology Resource Report Resource Website 1+ mentions |
Enzyme Mechanism Ontology (RRID:SCR_010315) | EMO | controlled vocabulary, data or information resource, ontology | Ontology to describe the active components of the enzyme''s reactions (cofactors, amino acid residues and cognate ligands) and their roles in the reaction. EMO builds upon this by formalizing key concepts, and the relationships between them, necessary to define enzymes and their functions. This describes not only the general features of an enzyme, including the EC number (catalytic activity), 3D structure and cellular locations, but also allows for the detailed annotation of the mechanism. This mechanistic detail can be either at a gross level (overall reaction only), or the more detailed granularity of the steps and components required to effect the overall chemical transformation. | owl | is listed by: BioPortal | nlx_157397 | SCR_010315 | 2026-09-05 06:26:39 | 1 | |||||||||
|
Enzyme Reaction Ontology for partial chemical perspectives Resource Report Resource Website 1+ mentions |
Enzyme Reaction Ontology for partial chemical perspectives (RRID:SCR_010316) | PIERO | controlled vocabulary, data or information resource, ontology | An enzyme ontology that deals with partial reactions (transformations) | owl | is listed by: BioPortal | nlx_157398 | SCR_010316 | 2026-09-05 06:26:39 | 1 | |||||||||
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Epilepsy Ontology Resource Report Resource Website |
Epilepsy Ontology (RRID:SCR_010317) | EPILONT | controlled vocabulary, data or information resource, ontology | Ontology about the epilepsy domain and epileptic seizures. Based on the diagnosis proposed by the International League Against Epilepsy (ILAE). | owl | is listed by: BioPortal | nlx_157399 | SCR_010317 | 2026-09-05 06:26:39 | 0 |
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