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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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BRAINSMush Resource Report Resource Website |
BRAINSMush (RRID:SCR_009485) | BRAINSMush | data processing software, image analysis software, segmentation software, software application, software resource | Tool to generate brain volume mask from input of T1 and T2-weighted images alongside a region of interest brain mask. This volume mask omits dura, skull, eyes, etc. The program is built upon ITK and uses the Slicer3 execution model framework to define the command line arguments and can be fully integrated with Slicer3 using the module discovery capabilities of Slicer3. | analyze, application, bsd license, bsd/mit-style open source license, c++, console (text based), dicom, magnetic resonance, nifti, nrrd, segmentation | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | BSD License | nlx_155702 | http://www.nitrc.org/projects/brainsmush | SCR_009485 | 2026-09-05 06:26:33 | 0 | |||||||
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Quip Resource Report Resource Website 50+ mentions |
Quip (RRID:SCR_009362) | Quip | software resource | Compresses next-generation sequencing data in the FASTQ and SAM/BAM formats with extreme prejudice. | is listed by: OMICtools | OMICS_00965 | SCR_009362 | 2026-09-05 06:26:32 | 56 | ||||||||||
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Sigma-Aldrich Resource Report Resource Website 10000+ mentions |
Sigma-Aldrich (RRID:SCR_008988) | commercial organization | American chemical, life science and biotechnology company owned by Merck KGaA. Merger of Sigma Chemical Company and Aldrich Chemical Company. Provides organic and inorganic chemicals, building blocks, reagents, advanced materials and stable isotopes for chemical synthesis, medicinal chemistry and materials science, antibiotics, buffers, carbohydrates, enzymes, forensic tools, hematology and histology, nucleotides, proteins, peptides, amino acids and their derivatives. | Commercial, organization, chemical, life science, biotechnology, company, Merck, reagent |
uses: GenomeCompiler is related to: GenomeCompiler is parent organization of: Cell Signaling and Neuroscience: Pathway Slides and Charts is parent organization of: BioReliance |
nlx_152460 | SCR_008988 | Aldrich, Sigma, Merck KGsA, Merck, Sigma Aldrich | 2026-09-05 06:26:31 | 140605 | |||||||||
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Santa Cruz Biotechnology Resource Report Resource Website 10000+ mentions |
Santa Cruz Biotechnology (RRID:SCR_008987) | commercial organization | An Antibody supplier | nlx_152453 | SCR_008987 | Santa Cruz Biotechnology inc., SantaCruz, Santa Cruz | 2026-09-05 06:26:31 | 42303 | |||||||||||
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OriGene Resource Report Resource Website 500+ mentions |
OriGene (RRID:SCR_008985) | OriGene | commercial organization | A research tool company focused on the creation of the largest commercial collection of full-length human cDNAs in a standard expression vector. The availability of the complete human genome sequence and the subsequent development of genome-based tools have enabled the identification of relevant drug targets through system biology approaches. OriGene''s vision is to prepare comprehensive, genome wide research tools and technology platforms to enable scientists to study complete biological pathways, thus enabling a better understanding of disease mechanisms including cancer and stem cell research. OriGene Technologies uses high-throughput, genome wide approach to develop products for pharmaceutical, biotechnology, and academic research. Their flagship product is the cDNA clone collection, a searchable gene bank of over 30,000 human full-length TrueClone cDNA collection and over 25,000 TrueORF cDNA clones. From their TrueORF cDNA clones, they have developed the largest offering of full length human proteins expressed in mammalian cells, ideal for functional studies. Their TrueMAB project develops mouse monoclonal antibodies against protein antigens with the goal to develop protein assays for every human protein. They also offer complete molecular biology services from codon optimization, gene synthesis, protein expression and assay development. In addition, they offer unique gene expression products such as TissueScan cancer tissue qPCR arrays and tissue biorepository for biomarker discovery and validation. |
is listed by: ScienceExchange is listed by: One Mind Biospecimen Bank Listing is related to: Origene China |
nlx_152424, SciEx_9281 | https://www.scienceexchange.com/facilities/origene-technologies-inc | SCR_008985 | OriGene Technologies Inc., OriGene Technologies | 2026-09-05 06:26:31 | 789 | ||||||||
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5 PRIME Resource Report Resource Website 10+ mentions |
5 PRIME (RRID:SCR_008982) | commercial organization | THIS RESOURCE IS NO LONGER IN SERVICE, documented on February 2nd, 2022. Antibody supplier. | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152240 | SCR_008982 | 2026-09-05 06:26:31 | 10 | |||||||||||
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3H Biomedical AB Resource Report Resource Website 1+ mentions |
3H Biomedical AB (RRID:SCR_008981) | commercial organization | An Antibody supplier | nlx_152239 | SCR_008981 | 2026-09-05 06:26:31 | 3 | ||||||||||||
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Renal Disease Portal Resource Report Resource Website |
Renal Disease Portal (RRID:SCR_009030) | Renal Disease Portal | data or information resource, data set, disease-related portal, portal, topical portal | An integrated resource for information on genes, QTLs and strains associated with a variety of kidney and renal system conditions such as Renal Hypertension, Polycystic Kidney Disease and Renal Insufficiency, as well as Kidney Neoplasms. | gene, quantitative trait locus, strain, renal hypertension, kidney neoplasm, phenotype, pathway, biological process, disease, kidney, genome, gviewer, chromosome, molecular function, cellular component, visualization, synteny |
is related to: NIDDK Information Network (dkNET) is related to: Gene Ontology has parent organization: Rat Genome Database (RGD) |
Renal disease, Renal hypertension, Polycystic kidney disease, Renal insufficiency, Kidney neoplasm, Diabetes Insipidus, Hyperoxaluria, Renal hypertension, Nephritis, Nephrocalcinosis, Nephrolithiasis, Nephrosis, Renal Fibrosis, Inborn Error of Renal Tubular Transport, Uremia | nlx_153941 | SCR_009030 | RGD Renal Disease Portal | 2026-09-05 06:26:32 | 0 | |||||||
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National Geophysical Data Center Resource Report Resource Website 10+ mentions |
National Geophysical Data Center (RRID:SCR_009429) | NGDC | data or information resource, organization portal, portal, service resource | National Data Center that provides scientific stewardship, products, and services for geophysical data from sea floor and solid earth environments, including Earth observations from space. Please note that routine underway geophyiscal shipboard data collected with standard equipment aboard the UNOLS fleet (e.g. bathymetry, subbottom, magnetics, gravity) are routinely transmitted to NGDC via Rolling Deck to Repository (R2R). | geophysics, sea floor, solid earth, bathymetry, subbottom, magnetics, gravity |
is listed by: CINERGI has parent organization: National Oceanic and Atmospheric Administration |
nlx_154716 | SCR_009429 | 2026-09-05 06:26:32 | 46 | |||||||||
|
National Climatic Data Center Resource Report Resource Website 100+ mentions |
National Climatic Data Center (RRID:SCR_009427) | NCDC | data or information resource, data repository, database, service resource, storage service resource | National Data Center that accepts and makes available weather, climate, paleoclimate, meteorological data. | weather, climate, paleoclimate, meteorology, FASEB list |
is listed by: CINERGI has parent organization: National Oceanic and Atmospheric Administration is parent organization of: World Data Center for Paleoclimatology |
nlx_154702 | SCR_009427 | 2026-09-05 06:26:32 | 135 | |||||||||
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GRDR Resource Report Resource Website 1+ mentions |
GRDR (RRID:SCR_008978) | GRDR, RaDaR | data or information resource, data repository, database, patient registry, people resource, service resource, storage service resource | Data repository of de-identified patient data, aggregated in a standardized manner, to enable analyses across many rare diseases and to facilitate various research projects, clinical studies, and clinical trials. The aim is to facilitate drug and therapeutics development, and to improve the quality of life for the many millions of people who are suffering from rare diseases. The goal of GRDR is to enable analyses of data across many rare diseases and to facilitate clinical trials and other studies. During the two-year pilot program, a web-based template will be developed to allow any patient organization to establish a rare disease patient registry. At the conclusion of the program, guidance will be available to patient groups to establish a registry and to contribute de-identified patient data to the GRDR repository. A Request for Information (RFI) was released on February 10, 2012 requesting information from patient groups about their interest in participating in a GRDR pilot project. ORDR selected 30 patient organizations to participate in this pilot program to test the different functionalities of the GRDR. Fifteen (15) organizations with established registries and 15 organizations that do not have patient registry. The 15 patient groups, each without a registry, were selected to assist in testing the implementation of the ORDR Common Data Elements (CDEs) in the newly developed registry infrastructure. These organizations will participate in the development and promotion of a new patient registry for their rare disease. The GRDR program will fund the development and hosting of the registry during the pilot program. Thereafter, the patient registry is expected to be self-sustaining.The 15 established patient registries were selected to integrate their de-identified data into the GRDR to evaluate the data mapping and data import/export processes. The GRDR team will assist these organizations in mapping their existing registry data to the CDEs. Participating registries must have a means to export their de-identified registry data into a specified data format that will facilitate loading the data into the GRDR repository on a regular basis. The GRDR will also develop the capability to link patients'''' data and medical information to donated biospecimens by using a Voluntary Global Unique Patient Identifier (GUID). The identifier will enable the creation of an interface between the patient registries that are linked to biorepositories and the Rare Disease Human Biospecimens/Biorepositories (RD-HUB) http://biospecimens.ordr.info.nih.gov/. | clinical, common data element, global unique patient identifier, clinical trial, drug development, therapy |
is related to: Biospecimens/Biorepositories: Rare Disease-HUB (RD-HUB) is related to: NIH Data Sharing Repositories has parent organization: Office of Rare Diseases Research |
Rare disease | NIH | Public, The community can contribute to this resource | nlx_152145 | http://www.grdr.info/ | SCR_008978 | Rare Diseases Registry Program (RaDaR), Global Rare Diseases Patient Registry and Data Repository | 2026-09-05 06:26:31 | 1 | ||||
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Mind Lab Resource Report Resource Website |
Mind Lab (RRID:SCR_009025) | Mind Lab | data or information resource, image collection, video resource | Interactive laboratory of the mind composed of 4 themed sessions housing four short introductory movies and sixteen trials with those you can experience visual phenomena and illusions used for study in psychological experiments. | visual illusion, sensory perception, visual phenomena, psychological experiment, vision | has parent organization: Japan Science and Technology Agency | nlx_153853 | http://jvsc.jst.go.jp/find/mindlab/english/ | SCR_009025 | JST Virtual Science Center Mind Lab | 2026-09-05 06:26:32 | 0 | |||||||
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MFCompress Resource Report Resource Website 1+ mentions |
MFCompress (RRID:SCR_009301) | MFCompress | software resource | A compression tool for FASTA and multi-FASTA files. | is listed by: OMICtools | PMID:24132931 | OMICS_00963 | SCR_009301 | 2026-09-05 06:26:32 | 3 | |||||||||
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RLZ Resource Report Resource Website |
RLZ (RRID:SCR_009420) | RLZ | software resource | Optimized relative Lempel-Ziv compression of genomes. | is listed by: OMICtools | OMICS_00966 | SCR_009420 | Relative Lempel-Ziv Compression of Genomes | 2026-09-05 06:26:32 | 0 | |||||||||
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GReEn Resource Report Resource Website 100+ mentions |
GReEn (RRID:SCR_009264) | GReEn | software resource | A compression tool recently proposed for compressing genome resequencing data using a reference genome sequence., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. |
is listed by: OMICtools has parent organization: University of Aveiro; Aveiro; Portugal |
PMID:23872967 PMID:22139935 |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00959 | SCR_009264 | Genome Resequencing Encoding | 2026-09-05 06:26:32 | 346 | |||||||
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Digital Ageing Atlas Resource Report Resource Website 10+ mentions |
Digital Ageing Atlas (RRID:SCR_009020) | DAA | data or information resource, data repository, database, service resource, storage service resource | Database of age-related changes covering different biological levels, including molecular, physiological, psychological and pathological age-related data, to create an interactive portal that serves as a centralized collection of human aging changes and pathologies. To facilitate integrative, system-level studies of aging, the DAA provides a centralized source for aging-related data as well as basic tools to query and visualize the data, including anatomical models. Data in the DAA is manually curated from the literature and retrieved from public databases. For more detailed analyses users are able to download the entire database. More information on how to use the DAA is available on the help page. The DAA primarily focuses on human aging, but also includes supplementary mouse data, in particular gene expression data, to enhance and expand the information on human aging. If you would like to contribute to the database yourself, for instance if you have new data on aging, please use the contribute page to submit your data. | late adult human, anatomy, gene, molecular, pathological, physiological, psychological, tissue, reference, cellualar, gene expression | has parent organization: University of Liverpool; Liverpool; United Kingdom | Aging | The community can contribute to this resource, Creative Commons Attribution License, v3 Unported | nlx_153874 | SCR_009020 | Digital Aging Atlas | 2026-09-05 06:26:31 | 15 | ||||||
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SeqBuster Resource Report Resource Website 10+ mentions |
SeqBuster (RRID:SCR_009616) | data analysis software, data processing software, software application, software resource | Software tool for processing and analysis of small RNAs datasets.Reveals ubiquitous miRNA modifications in human embryonic cells. | small RNAs datasets, ubiquitous miRNA modifications, human embryonic cells, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
CIBERESP ; Sixth Framework Programme of the European Commission ; Spanish Ministry of Health ; Spanish Ministry of Science and Innovation |
PMID:20008100 | Free, Available for download, Freely available | OMICS_00367, biotools:seqbuster | https://bio.tools/seqbuster | SCR_009616 | 2026-09-05 06:26:35 | 31 | ||||||
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U.S. Department of Commerce Resource Report Resource Website 1+ mentions |
U.S. Department of Commerce (RRID:SCR_009859) | Commerce.gov | institution | Executive department of the federal government concerned with promoting economic growth. Among its tasks are gathering economic and demographic data for business and government decision-making, and helping to set industrial standards. | Government granting agency |
is parent organization of: NIST - National Institute of Standards and Technology is parent organization of: National Oceanic and Atmospheric Administration is parent organization of: U.S. Census Bureau |
Crossref funder ID: 100000190, grid.239119.1, ISNI: 0000 0004 0478 6426, Wikidata: Q503577, nlx_144074 | https://ror.org/04chq2495 | SCR_009859 | United States Department of Commerce | 2026-09-05 06:26:36 | 2 | |||||||
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Fiber Optic Button Response System Resource Report Resource Website 10+ mentions |
Fiber Optic Button Response System (RRID:SCR_009577) | instrument resource | Instrument that accurately gathers participant responses and verifies signals. The Celeritas Series response units are assembled using high-impact, chemical resistant, medical grade plastic. The response units include a tactile indicator to ensure correct finger placement during experiments and comfortably attach to the participant?s wrists. The units communicate button presses through fiber optic cabling which connects to a Fiber Optic Interface Console located in the control room through an available wave guide. The interface console provides real-time feedback of participant responses via LED indicators and includes a set of switches which can be used to make responses for the participant as needed. | eeg, meg, electrocorticography, experiment control, hardware, magnetic resonance, response monitoring, instrument, equipment | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | https://drive.google.com/file/d/1vvm02GkPgAG6LnRzWE9FEQZD6JSqtngA/view?usp=drivesdk | nlx_155759 | http://www.nitrc.org/projects/fobrs, https://pstnet.com/wp-content/uploads/2021/04/Celeritas-Operator-Manual.pdf | SCR_009577 | Celeritas Fiber Optic Response System | 2026-09-05 06:26:34 | 22 | |||||||
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Oregon State University; Oregon; USA Resource Report Resource Website 1+ mentions |
Oregon State University; Oregon; USA (RRID:SCR_009731) | university | Public research university in Corvallis, Oregon. The university currently offers more than 200 undergraduate-degree programs along with a variety of graduate and doctoral degrees. |
is parent organization of: TileQC is parent organization of: AFTOL is parent organization of: CASHX is parent organization of: Chromaseq is parent organization of: Plant Ontology is parent organization of: Plant Ontology is parent organization of: Northern Spalting - Applied Mycology Lab is parent organization of: EnVision Manager is parent organization of: Oregon State University Center for Quantitative Life Sciences Core Facility is parent organization of: Oregon State University Electron Microscopy Core Facility has organization facet: pathogensurveillance |
Wikidata:Q861888, ISNI:0000 0001 2112 1969, Crossref funder ID:100009612, nlx_87751, grid.4391.f | https://ror.org/00ysfqy60 | SCR_009731 | 2026-09-05 06:26:36 | 2 |
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