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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Wellcome-CTC Mouse Strain SNP Genotype Set Resource Report Resource Website 1+ mentions |
Wellcome-CTC Mouse Strain SNP Genotype Set (RRID:SCR_003216) | Wellcome-CTC Mouse Strain SNP Genotype Set | data or information resource, data set | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 19,2025. Data set of genotypes available for 480 strains and 13370 successful SNP assays that are mapped to build34 of the mouse genome, including 107 SNPs that are mapped to random unanchored sequence 13374 SNPs are mapped onto Build 33 of the mouse genome. You can access the data relative to Build 33 or Build 34. | genome, genotype, snp, chromosome, haplotype, haplotype structure, recombinant inbred mouse strain | has parent organization: Wellcome Trust Centre for Human Genetics | Wellcome Trust ; NCRR R24RR015116; NIGMS R01GM072863; NIAAA U01AA014425; NINDS R01NS049445; NIMH P20-MH 62009; NIAAA U24AA13513 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156947 | SCR_003216 | 2026-07-27 09:31:42 | 3 | |||||||
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NRCAM Resource Report Resource Website 50+ mentions |
NRCAM (RRID:SCR_006134) | NRCAM | biomedical technology research center, training resource, service resource, access service resource | Biomedical technology research center that develops new technologies for modeling cell biological processes. The technologies are integrated through Virtual Cell, a problem-solving environment built on a central database and disseminated as a Web application for the analysis, modeling and simulation of cell biological processes. NRCAM resides at the Center for Cell Analysis and Modeling, CCAM, and provides a vast array of laboratory equipment that can be used for obtaining experimental data needed to create and enhance Virtual Cell models. Microscopy instrumentation includes three confocal laser scanning microscopes including UV excitation, nonlinear optical microscopy utilizing a titanium sapphire pulsed laser, confocal-based fluorescence correlation spectroscopy, wide-field imaging workstation with cooled CCD and rapid excitation filter wheel, and dual-wavelength spectrofluorometer. Access to the facilities and technical staff is open to all researchers., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | modeling, simulation, cell, microscopy, software, biological process, model, cell model, informatics, computing and informatics technology center, FASEB list |
is listed by: 3DVC has parent organization: University of Connecticut; Connecticut; USA is parent organization of: Virtual Cell at the National Resource for Cell Analysis and Modeling |
NIGMS ; NCRR ; NIH Blueprint for Neuroscience Research |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-03953 | SCR_006134 | The National Resource for Cell Analysis and Modeling, National Resource of Cell Analysis and Modeling, National Resource of Cell Analysis and Modeling (NRCAM), National Resource for Cell Analysis and Modeling, National Resource of Cell Analysis & Modeling (NRCAM) | 2026-07-27 09:32:28 | 76 | ||||||
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Ultrafast Optical Processes Laboratory Resource Report Resource Website 1+ mentions |
Ultrafast Optical Processes Laboratory (RRID:SCR_006582) | Ultrafast Optical Processes Laboratory | biomedical technology research center, training resource, service resource, access service resource | Biomedical technology research center and training resource that develops time-resolved laser technologies and instrumentation, with a focus on 2-D IR spectroscopy. The technologies enable atomic-level measurements of the fastest steps in biological processes to elucidate structure and dynamics in biological macromolecules, assemblies and cells. The Center makes most of its instrumentation available for service research projects to outside users nation-wide. | spectroscopy, structure, dynamics, macromolecule, assembly, cell, optical and laser technology center, laser spectroscopy, biochemical, biophysical, biomedical, laser, biological process | has parent organization: University of Pittsburgh; Pennsylvania; USA | NIGMS 9P41GM104605; NCRR P41RR001348 |
nlx_152664 | SCR_006582 | Laser and Biomedical Technology Laboratories | 2026-07-27 09:32:35 | 1 | |||||||
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Northeastern Collaborative Access Team Resource Report Resource Website 10+ mentions |
Northeastern Collaborative Access Team (RRID:SCR_008999) | NE-CAT, NECAT | biomedical technology research center, training resource, service resource, access service resource | Biomedical technology research center for macromolecular crystallography at Sector 24 of the Advanced Photon Source at Argonne National Laboratory. The macromolecules studied by resource users often involve large unit cells, small crystals, weakly diffracting crystals and crystals with weak anomalous scattering. Technological research includes use of silicon monochromators, focusing optics, methods of phase determination, radiation damage, X-ray detectors, automated sample mounting, microdiffraction and crystallographic software. | synchrotron, x-ray, beamline, structural biology, macromolecular crystallography, macromolecule, crystallography, structural biology technology center | has parent organization: Cornell University; New York; USA | NIGMS | nlx_152674 | SCR_008999 | Northeastern CAT, Northeastern Collaborative Access Team Undulator Resource for Structural Biology | 2026-07-27 09:33:15 | 16 | |||||||
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Dockground: Benchmarks, Docoys, Templates, and other knowledge resources for DOCKING Resource Report Resource Website 1+ mentions |
Dockground: Benchmarks, Docoys, Templates, and other knowledge resources for DOCKING (RRID:SCR_007412) | data or information resource, data set | Data sets, tools and computational techniques for modeling of protein interactions, including docking benchmarks, docking decoys and docking templates. Adequate computational techniques for modeling of protein interactions are important because of the growing number of known protein 3D structures, particularly in the context of structural genomics. The first release of the DOCKGROUND resource (Douguet et al., Bioinformatics 2006; 22:2612-2618) implemented a comprehensive database of cocrystallized (bound) protein-protein complexes in a relational database of annotated structures. Additional releases added features to the set of bound structures, such as regularly updated downloadable datasets: automatically generated nonredundant set, built according to most common criteria, and a manually curated set that includes only biological nonobligate complexes along with a number of additional useful characteristics. Also included are unbound (experimental and simulated) protein-protein complexes. Complexes from the bound dataset are used to identify crystallized unbound analogs. If such analogs do not exist, the unbound structures are simulated by rotamer library optimization. Thus, the database contains comprehensive sets of complexes suitable for large scale benchmarking of docking algorithms. Advanced methodologies for simulating unbound conformations are being explored for the next release. The Dockground project is developed by the Vakser lab at the Center for Bioinformatics at the University of Kansas. Parts of Dockground were co-developed by Dominique Douguet from the Center of Structural Biochemistry (INSERM U554 - CNRS UMR5048), Montpellier, France. | protein 3d structure, protein interaction, protein interface, protein model, structural genomics, co-crystallized, protein complex, protein recognition, protein modeling, structure prediction, protein-protein complex, benchmark |
is listed by: 3DVC is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: University of Kansas; Kansas; USA |
NIH ; NIGMS R01 GM074255; NIGMS R01 GM61889 |
PMID:17803215 PMID:16928732 |
nif-0000-02757 | SCR_007412 | Dockground, Dockground: Benchmarks Docoys Templates other knowledge resources for DOCKING, Dockground: Benchmarks Docoys Templates and other knowledge resources for DOCKING | 2026-07-27 09:32:49 | 8 | |||||||
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Montana State University Mass Spectrometry Core Facility Resource Report Resource Website 1+ mentions |
Montana State University Mass Spectrometry Core Facility (RRID:SCR_012482) | access service resource, core facility, service resource | Provides access to mass spectrometers and mass spectrometry expertise. The facility currently maintains the following equipment Waters Synapt-XS Q-IMS-TOF with Waters I-Class UHPLC; Agilent 6538 Q-TOF with Agilent 1290 UHPLC;Agilent 7800 Inductively Coupled Plasma with Laser Ablation (193 nm);Bruker micrOTOF with Agilent 1290 UHPLC; Agilent 6490 Triple Quadrupole Mass Spectrometer; Bruker MALDI Autoflex; Agilent GC-MS; Waters Synapt G2S-i Q-TOF with Ion Mobility. | mass spectrometers, mass spectrometry expertise, proteomics, metabolomics, USEDit, ABRF |
is listed by: ScienceExchange is listed by: ABRF CoreMarketplace is related to: Montana State University Labs and Facilities is related to: USEDit has parent organization: Montana State University |
MJ Murdock Charitable Trust ; NIGMS P20GM103474; Montana State University |
Restricted | SciEx_239, ABRF_253 | https://coremarketplace.org/?FacilityID=253&citation=1 | http://www.scienceexchange.com/facilities/mass-spectrometry-facility | SCR_012482 | Montana State University Mass Spectrometry Facility, MSU Mass Spectrometry Facility, Proteomics, Metabolomics and Mass Spectrometry Facility | 2026-07-27 09:34:10 | 7 | |||||
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MAGeCK Resource Report Resource Website 100+ mentions |
MAGeCK (RRID:SCR_025016) | software application, software resource, data processing software, data analysis software | Software tool to identify important genes from genome-scale CRISPR-Cas9 screens. Used for prioritizing single-guide RNAs, genes and pathways in genome-scale CRISPR/Cas9 knockout screens. | identify genes, genome scale CRISPR-Cas9 screens, | NIGMS R01 GM099409; Dana-Farber Cancer Institute |
PMID:25476604 | Free, Available for download, Freely available | https://github.com/liulab-dfci/MAGeCK | SCR_025016 | Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout | 2026-07-27 09:37:16 | 182 | |||||||
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CRAPome Resource Report Resource Website 10+ mentions |
CRAPome (RRID:SCR_025008) | database, web service, software resource, data access protocol, data or information resource | Database of Mass Spectrometry contaminants and pipeline for Affinity Purification coupled with Mass Spectrometry analysis. Contaminant repository for affinity purification mass spectrometry data. Database of standardized negative controls. Used to identify protein-protein interactions. | Mass Spectrometry contaminants, standardized negative controls, contaminant repository, AP-MS analysis, affinity purification, mass spectrometry data, | NIGMS 5R01GM94231; NIDA DP1DA026192; NHLBI HL112618-01; Canadian Institutes of Health Research ; government of Ontario ; Austrian Academy of Sciences ; Austrian Federal Ministry for Science and Research ; European Research Council ; Austrian Science Fund ; European Molecular Biology Organisation ; Netherlands Proteomics Center ; European Union 7th Framework Program ; Stowers Institute for Medical Research ; Human Frontier Science Program ; NCI R21 CA16006001A1 |
PMID:23921808 | Free, Freely available, | https://reprint-apms.org/ | SCR_025008 | CRAPome:Contaminant Repository for Affinity Purification | 2026-07-27 09:37:16 | 16 | |||||||
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ReDU Resource Report Resource Website 1+ mentions |
ReDU (RRID:SCR_025105) | web service, data access protocol, software resource | Software framework to find and re-analyze public Mass Spectrometry data. Used to find uniformly formatted public MS/MS data in the Global Natural Product Social Molecular Networking Platform (GNPS) via formatted metadata. New or previously collected data can be added provided they adhere to the ReDU metadata standards (the implemented drag-and-drop validator is applicable to any scientific data) and data are available in GNPS/MassIVE. | Mass Spectrometry data, find uniformly formatted public MS/MS data, formatted metadata, Global Natural Product Social Molecular Networking Platform, GNPS, find and re-analyze public Mass Spectrometry data, ReDU metadata standards, data validator, | has parent organization: University of California at San Diego; California; USA | NIGMS P41 GM103484; NCI R03 CA211211; NIGMS R01 GM107550; Sloan Foundation ; Gordon and Betty Moore Foundation ; American Society for Mass Spectrometry ; NSF ; Netherlands eScience Center ; FAPESP ; Krupp Endowed Fund ; US Office of Naval Research ; University of California ; San Diego Center for Microbiome Innovation SEED grants |
PMID:32807955 | Free, Freely available | SCR_025105 | Reanalysis of Data User | 2026-07-27 09:37:20 | 1 | |||||||
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glmpca Resource Report Resource Website 1+ mentions |
glmpca (RRID:SCR_025517) | source code, software resource, software toolkit | Software R package for dimension reduction of non-normally distributed data. Generalized PCA for non-normally distributed data. | dimension reduction, non-normally distributed data, principal components analysis, | NCI T32CA009337; NHGRI R00HG009007; Chan-Zuckerberg Initiative ; NHGRI R01HG005220; NIGMS R01GM083084; NHGRI P41HG004059 |
PMID:31870412 | Free, Available for download, Freely available, | https://CRAN.R-project.org/package=glmpca | SCR_025517 | generalized version of principal components analysis | 2026-07-27 09:37:25 | 1 | |||||||
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WASP Resource Report Resource Website 1+ mentions |
WASP (RRID:SCR_025497) | software resource, source code, software toolkit | Software allele-specific pipeline for unbiased read mapping and molecular QTL discovery. Allele-specific software for robust molecular quantitative trait locus discovery. | molecular QTLs discovery, unbiased allele-specific read mapping and discovery, molecular QTLs, unbiased allele-specific read, mapping and discovery, | Howard Hughes Medical Institute ; NHGRI HG007036; NHGRI HG006123; NIMH MH101825; NIGMS GM007197; NSF |
PMID:26366987 | Free, Available for download, Freely available, | SCR_025497 | 2026-07-27 09:37:25 | 3 | |||||||||
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Brown University Transgenic and Gene Targeting Core Facility Resource Report Resource Website |
Brown University Transgenic and Gene Targeting Core Facility (RRID:SCR_017690) | MTGTF | access service resource, core facility, service resource | MTGTF is to support the investigators in using genetically modified mouse models in Brown University, affiliated hospitals and academic institutions in Rhode Island and other states. Provides services of molecular design and generation of transgenic and knock-out mouse models as well as general advice on use and management of such models. Conventional ES cell gene-targeting system is employed to serve as alternative or to fill the limitations of CRISPR/Cas9 system. Routine services include genotype analysis, sperm or embryo cryopreservation and storage, rederivation, in vitro fertilization (IVF). Other services, such as mouse vasectomy, embryo transfer, colony scale-up, intracytoplasmic sperm injection (ICSI) are also available. New services requiring MTGTF resources can be created through request. | Genetically, modified, mouse, model, support, molecular, design, transgenic, knock-out, ES, cell, targeting, system, CRISPR/Cas9, genotype, analysis, sperm, embryo, cryopreservation, storage, fertilization, vasectomy, service, core | NIGMS P30 GM103410 | Open | ABRF_79, SCR_017708 | SCR_017690 | Mouse Transgenic and Gene Targeting Facility | 2026-07-27 09:35:33 | 0 | |||||||
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West Virginia University Flow Cytometry and Single Cell Core Facility Resource Report Resource Website 10+ mentions |
West Virginia University Flow Cytometry and Single Cell Core Facility (RRID:SCR_017738) | access service resource, core facility, service resource | Facility provides instrumentation and scientific support for single cell analysis and sorting. Routinely performs analysis of both eukaryotic and prokaryotic cells for expression of intracellular and extracellular proteins, cell cycle, cell proliferation, cytokine production, and cell sorting based on expression of cell surface antigen(s) and/or expression of genetically engineered intercellular fluorescent proteins. | Single, cell, analysis, sorting, flow, cytometry, West Virginia, service, core | NCRR RR020866; NIGMS P30 GM103488; NIGMS P20 GM103434; NIGMS U54 GM104942; NIGMS U51 GM104942; NIH Office of the Director S10 OD016165; NIGMS P20 GM109098 |
Open | ABRF_221 | SCR_017738 | FCSCCF, WVU Flow Cytometry and Single Cell Core Facility | 2026-07-27 09:35:45 | 14 | ||||||||
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Arkansas University College of Medicine Flow Cytometry Core Facility Resource Report Resource Website |
Arkansas University College of Medicine Flow Cytometry Core Facility (RRID:SCR_017741) | access service resource, core facility, service resource | Core provides flow cytometry instrumentation and analysis. Instruments include Fortessa, FacsAria and Image Stream. | Flow, cytometry, biopolymer, proteomics, data, analysis, service, core | NIGMS P20 GM103625 | ABRF_215 | SCR_017741 | Biopolymers and Proteomics Core Facility | 2026-07-27 09:35:45 | 0 | |||||||||
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South Dakota University SD BRIN Proteomics Core Facility Resource Report Resource Website |
South Dakota University SD BRIN Proteomics Core Facility (RRID:SCR_017743) | access service resource, core facility, service resource | Core provides proteomics services to researchers from South Dakota and the surrounding region to rapidly analyze and identify protein expression patterns in their experimental systems.Develops experimental design, protocols, data analysis and interpretation.Provides consulting and advice in grant proposal, as well as data preparation to be submitted to proteomics journal according to requirements.Offers training in use of common equipment such as scanner, spot cutter, imaging software, technique and protocol issues, and sample preparation. | Proteomics, protein, expression, analysis, data, experimental, design, training, service, core | NIGMS ; Sanford School of Medicine and South Dakota Biomedical Research Infrastructure Network |
Open | ABRF_224 | SCR_017743 | Proteomics Core | 2026-07-27 09:35:34 | 0 | ||||||||
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Kansas University at Lawrence High Throughput Screening Laboratory Core Facility Resource Report Resource Website 1+ mentions |
Kansas University at Lawrence High Throughput Screening Laboratory Core Facility (RRID:SCR_017752) | KU-HTSL | access service resource, core facility, service resource | Core offers high throughput screening of large chemical libraries of compounds to identify novel chemical entities that target biological system of interest.Provides target identification and validation, assay development, high throughput screening, hit confirmation, data mining and medicinal chemistry to facilitate hit to lead development. | Screening, large, chemical, library, compound, novel, entity, target, identification, validation, assay, development, data, mining, medicinal, chemistry, service, core | NIGMS P30 GM103495; State of Kansas ; University of Kansas |
Open | ABRF_254 | SCR_017752 | High Throughput Screening Laboratory at KU | 2026-07-27 09:35:34 | 1 | |||||||
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University of New England In Vivo Behavior Core Facility Resource Report Resource Website |
University of New England In Vivo Behavior Core Facility (RRID:SCR_017883) | access service resource, core facility, service resource | Core provides technical expertise, training, instrumentation and related services for assessing behavior in animals to help to gain insight into function of nervous system and mechanisms of acute and chronic pain. Services include Behavioral Testing; General Behavioral Phenotyping: Observational Screens, Motor Function; Pain/Sensory Testing: Thermal, Mechanical, Chemical; Additional Neurobehavioral Tests: Psychiatric, Addiction, Learning and Memory;Miscellaneous Systems: GI Transit, Cardiovascular and Respiration. Other Services: Assistance choosing behavioral test and statistical tests for assessing results; Training in surgical techniques for small animal surgeries; Staff expertise includes surgical methods for producing pain models; dosing of drugs/anesthetics including central, systemic and localized administration; and tissue extractions. | in vivo, behavior, pain, sensory testing, training, function, addiction, neuropathic, CIPN, , system, acute, chronic, mechanism, motor, learning, memory, neurobehavioral |
is listed by: ABRF CoreMarketplace has parent organization: University of New England; Biddeford; USA |
NIGMS P30GM145497 | Open | https://coremarketplace.org/?FacilityID=758 | SCR_017883 | In Vivo Behavior Core | 2026-07-27 09:35:38 | 0 | |||||||
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Nemours/A.I.duPont Hospital for Children Cell Science Core Facility Resource Report Resource Website |
Nemours/A.I.duPont Hospital for Children Cell Science Core Facility (RRID:SCR_017854) | CSC | access service resource, core facility, service resource | Core specializes in cell, protein, and small molecules analysis as well as cell culture techniques. Services include:2-D gel electrophoresis, 2-D DIGE, LC-MS/MS, HPLC, flow cytometry, fluorescence-activated cell sorting (FACS), cell and tissue culture, and immortalization of cell lines. Our staff works closely with investigators to help design, perform, and analyze experiments.Offers training and assistance in flow cytometry, tissue culture, and operation many of our walk-up instruments.Instruments:Cell Sorter: FACS Aria III, BD Biosciences;Flow Cytometers, analyzers:C6, Accuri/BD Biosciences;Novocyte 3000, ACEA Biosciences;software for analysis: FSC Express, DeNovo software;LC-MS/MS: 6460 Triple Quadrupole, Agilent;Typhoon Trio Scanner, GE Lifesciences;Blood Analyzer: Hemavet 950, Drew Scientific.Plate Readers:;Victor Nivo 5F, Perkin Elmer;Luminometer: Centro XS, Berthold.Services:Cell Sorting (FACS);2-D gel electrophoresis/2D-DIGE;LC-MS/MS analysis of compounds; Cell immortilization. | Cell, protein, small, molecules, analysis, culture, electrophoresis, 2D DIGE, LC-MS/MS, HPLC, FACS, immortalization, flow, cytometry, sorting, training, service, core, | NIGMS P30 GM114736 | Open | ABRF_662 | SCR_017854 | Cell Science Core | 2026-07-27 09:35:36 | 0 | |||||||
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University of Nebraska Medical Center Animal Behavior Core Facility Resource Report Resource Website 1+ mentions |
University of Nebraska Medical Center Animal Behavior Core Facility (RRID:SCR_018830) | access service resource, core facility, service resource | Provides investigators with expertise, equipment, and space that is required to conduct innovative acoustic, behavioral, and cognitive research with focus on rigor, reproducibility, and maintaining the highest standards of animal welfare. | USEDit, acoustic, behavioral, cognitive, expertise, equipment, space service, ABRF, ABRF |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: University of Nebraska; Nebraska; USA |
NIGMS 1P20GM130447 | Restricted | ABRF_1021 | https://coremarketplace.org/?FacilityID=1021 | SCR_018830 | UNMC Animal Behavior Core, University of Nebraska Medical Center UNMC Animal Behavior Core, Animal Behavior Core | 2026-07-27 09:35:50 | 4 | ||||||
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Louisiana State University Pennington Biomedical Research Center Genomics Core Facility Resource Report Resource Website |
Louisiana State University Pennington Biomedical Research Center Genomics Core Facility (RRID:SCR_018675) | GCF | access service resource, core facility, service resource | Provides services which include Sanger and next-generation DNA sequencing,DNA fragment analysis,qualitative and quantitative analysis of DNA, protein, and RNA samples, quantitative PCR, microarray RNA labeling, hybridization, and scanning robotics,bioinformatics.Individual and small group training and consultation services are offered for sequence analysis, real-time PCR, next-generation sequencing and microarray analysis. | USEDit, Sanger sequencing, next generation DNA sequencing, DNA fragment analysis, quality, quantity, analysis, DNA, protein, RAN, qPCR, microarray RNA labeling, hybridization, scanning robotics, training, ABRF | is listed by: ABRF CoreMarketplace | NIGMS 1P30GM118430; NIDDK 2P30DK072476 |
Open | ABRF_434 | https://coremarketplace.org/?FacilityID=434 | SCR_018675 | Pennington Genomics Core, Pennington Biomedical Research Center Genomics Core | 2026-07-27 09:35:48 | 0 |
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