Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
University of Arizona; Arizona; USA Resource Report Resource Website 1+ mentions |
University of Arizona; Arizona; USA (RRID:SCR_002459) | UA | university | Public research university in Tucson, Arizona that offers undergraduate and graduate degree programs in psychology, audiology, speech pathology, and medicine. | public research university, arizona |
is related to: University of Arizona CBC Glassblowing Core Facility is parent organization of: Bio Resource for Array Genes Database is parent organization of: Plantagora is parent organization of: Center for Gamma Ray Imaging is parent organization of: TCW is parent organization of: Bird Base is parent organization of: Arizona Cancer Center Tumor Bank is parent organization of: Tree of Life Web Project is parent organization of: HIV and its Coreceptors is parent organization of: Arizona Center for Education and Research on Therapeutics is parent organization of: AGI is parent organization of: GEISHA - Gallus Expression in Situ Hybridization Analysis: A Chicken Embryo Gene Expression Database is parent organization of: UA Neuroscience GIDP is parent organization of: ChromDB- the chromatin database is parent organization of: Newbler is parent organization of: Arizona Genetics Core is parent organization of: UA Department of Chemistry and Biochemistry Labs and Facilities is parent organization of: University of Arizona Labs and Facilities is parent organization of: UA Infectious Disease Resource Core is parent organization of: University of Arizona Nuclear Magnetic Resonance Core Facility is parent organization of: PhenoGO is parent organization of: FlyBrain is parent organization of: MIRROR: FlyBrain, An Online Atlas and Database of the Drosophila Nervous System is parent organization of: CyVerse is parent organization of: iMicrobe is parent organization of: Arizona University Genetics Core Facility is parent organization of: University of Arizona Molecular Structures Core Facility is parent organization of: University of Arizona Electron Photoemission Spectroscopy and Imaging Laboratory for Observation at the Nanoscale Core Facility is parent organization of: University of Arizona Xray Diffraction Core Facility is parent organization of: University of Arizona Laboratory for Electron Spectroscopy and Surface Analysis Core Facility is parent organization of: University of Arizona W.M. Keck Center for Nano Scale Imaging Core Facility is parent organization of: University of Arizona Electron Paramagnetic Resonance Core Facility is parent organization of: University of Arizona CBC Electronics Core Facility is parent organization of: University of Arizona CBC Machine Shop Core Facility is parent organization of: University of Arizona Imaging Cores Electron Core Facility is parent organization of: University of Arizona Imaging Cores Optical Core Facility is parent organization of: University of Arizona Analytical and Biological Mass Spectrometry Core Facility is parent organization of: University of Arizona Functional Genomics Core Facility is parent organization of: University of Arizona Flow Cytometry and Human Immune Monitoring Shared Resource Core Facility is parent organization of: University of Arizona Phenotyping Core Facility is parent organization of: Planet Microbe is parent organization of: University of Arizona Molecular Clinical Core Facility |
Free | ISNI:0000 0001 2168 186X, grid.134563.6, nlx_13022, Crossref funder ID:100007899, Wikidata:Q503419 | https://ror.org/03m2x1q45 | SCR_002459 | U of A, University of Arizona, UofA | 2026-07-25 12:05:22 | 2 | ||||||
|
RepARK Resource Report Resource Website 1+ mentions |
RepARK (RRID:SCR_002333) | software resource | Software using a de novo repeat assembly method which avoids potential biases by using abundant k-mers of next-generation sequencing (NGS) whole genome sequencing (WGS) reads without requiring a reference genome. | standalone software | is listed by: OMICtools | PMID:24634442 | OMICS_03446 | SCR_002333 | Repetitive motif detection by Assembly of Repetitive K-mers | 2026-07-25 12:05:24 | 7 | ||||||||
|
Advanced Targeting Systems Resource Report Resource Website 1+ mentions |
Advanced Targeting Systems (RRID:SCR_002328) | ATS | commercial organization | Commercial supplier of antibodies, assay kits, conjugates and various toxins for biomedical research. ATS's product line is designed to assist scientists in the study of system functions, cell functionality, diseases and disorders. | antibody supplier, biomedical research resource, targeting reagent | Commercially available | nlx_152256, grid.422052.3 | https://ror.org/01tzmft44 | SCR_002328 | 2026-07-25 12:05:20 | 2 | ||||||||
|
COGNISION Resource Report Resource Website 1+ mentions |
COGNISION (RRID:SCR_002362) | COGNISION | software resource | A portable, highly integrated, internet-enabled, hardware / software platform and patient management system, which includes an online Patient Manager module which complies with the HIPAA Final Security Rule, an event-related potential (ERP) Viewer module to view and analyze raw and average ERP waves, and a Protocol Editor module to simplify the choice and administration of selected ERP protocols. It is also easy to train and administer with non-specialized personnel, and is designed to be used in an out-patient setting. COGNISION TM with auditory or visual event-related potential (ERP) technology, provides a direct physiologic measure of patients' cognitive processing (i.e., a cognitive biomarker). | eeg, eeg, meg, electrocorticography, event-related potentials, hardware, physiological recording, instrument, equipment | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Commercial License | nlx_155724 | http://www.nitrc.org/projects/neuronetrix | SCR_002362 | COGNISION (TM) System | 2026-07-25 12:05:21 | 2 | ||||||
|
Grants.gov Resource Report Resource Website 10+ mentions |
Grants.gov (RRID:SCR_002661) | funding resource | A source to FIND and APPLY for federal grants. The U.S. Department of Health and Human Services is proud to be the managing partner for Grants.gov, an initiative that is having an unparalleled impact on the grant community. All discretionary grants offered by the 26 federal grant-making agencies can be found on Grants.gov. Grants.gov was established as a governmental resource named the E-Grants Initiative, part of the President's 2002 Fiscal Year Management Agenda to improve government services to the public. The concept has its origins in the Federal Financial Assistance Management Improvement Act of 1999, also known as Public Law 106-107. Public Law 106-107 has since sunset and is now known as the Grants Policy Committee (GPC). For more information on the Grants Policy Committee, click here. Today, Grants.gov is a central storehouse for information on over 1,000 grant programs and provides access to approximately $500 billion in annual awards. You may find information on *What is a Grant? *Who is Eligible for a Grant? *Program highlights and accomplishments *Grants.gov in the News (Articles, press releases, milestones and events) *Program Status (Detailed information about our relationship with partner federal agencies, financial contributions, grant opportunities, fiscal reports, planning strategies and statistics.) | grant, funding, award, database, opportunity |
is used by: NIF Data Federation is used by: Aging Portal is used by: NIDDK Information Network (dkNET) |
Free, Freely available | nif-0000-22393 | SCR_002661 | 2026-07-25 12:05:32 | 36 | |||||||||
|
NiBabel Resource Report Resource Website 100+ mentions |
NiBabel (RRID:SCR_002498) | NiBabel | software resource | A Python package for reading and writing a variety of medical and neuroimaging file formats. This includes: ANALYZE (plain, SPM99, SPM2), NIfTI1, as well as MINC. NiBabel is the successor of PyNIfTI. | magnetic resonance, python, neuroimaging |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: PyNIfTI is related to: MNE software has parent organization: Neuroimaging in Python |
Free, Available for download, Freely available | nlx_155896 | http://www.nitrc.org/projects/nibabel | SCR_002498 | NIPY File IO | 2026-07-25 12:05:23 | 122 | ||||||
|
Pythagorean Displacement and Motion Regressors Resource Report Resource Website 1+ mentions |
Pythagorean Displacement and Motion Regressors (RRID:SCR_002525) | Pythagorean Displacement and Motion Regressors | software resource | Matlab script that uses the Pythagorean Theorem to calculate head motion and position, while preserving degrees of freedom. The motion parameters output by SPM (rp*.txt) estimate head position relative to the first volume in 3D translation and 3D rotation, which are often entered as a nuisance regressor during individual-level statistics. Regressing the total displacement and relative position can potentially explain more variance in voxel-level BOLD signals that is related to head movement during an fMRI experiment. | algorithm, magnetic resonance, matlab, pythagorean theorem, head, motion, position, fmri | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Free, Available for download, Freely available | nlx_155931 | SCR_002525 | 2026-07-25 12:05:29 | 5 | ||||||||
|
Signed Differential Mapping Resource Report Resource Website 100+ mentions |
Signed Differential Mapping (RRID:SCR_002554) | SDM | software resource | Statistical method and software for conducting image- and coordinate-based meta-analysis of neuroimaging studies investigating differences in brain activity (e.g. BOLD response in fMRI, metabolism in PET) or structure (e.g. gray matter volume in VBM, voxel-based or TBSS white matter fractional anisotropy in DTI, etcetera). | magnetic resonance, pet, spect, fmri, vbm, meta-analysis | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Free, Available for download, Freely available | nlx_155962 | http://www.nitrc.org/projects/sdm | SCR_002554 | 2026-07-25 12:05:25 | 150 | |||||||
|
MBASED Resource Report Resource Website 10+ mentions |
MBASED (RRID:SCR_002584) | software resource | Software package containing functions for allele-specific gene expression (ASE) analysis using meta-analysis based allele-specific expression detection. | software package, unix/linux, mac os x, windows, r, gene expression, sequencing, transcription |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:25315065 | Free, Available for download, Freely available | OMICS_05502 | http://www.bioconductor.org/packages/release/bioc/html/MBASED.html | SCR_002584 | Meta-analysis Based Allele-Specific Expression Detection, MBASED - Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection | 2026-07-25 12:05:26 | 17 | ||||||
|
pymzML Resource Report Resource Website 10+ mentions |
pymzML (RRID:SCR_002500) | software resource | Python module to parse mzML data in Python based on cElementTree. It is an extension to Python that offers (i) an easy access to mass spectrometry (MS) data that allows the rapid development of tools, (ii) a very fast parser for mzML data and (iii) a set of functions to compare or handle spectra., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | standalone software, python, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian is related to: mzML has parent organization: University of Munster; North Rhine-Westphalia; Germany |
PMID:22302572 | Free, Available for download, Freely available | biotools:pymzml, OMICS_03355 | https://bio.tools/pymzml | SCR_002500 | 2026-07-25 12:05:24 | 18 | |||||||
|
University of Auckland; Auckland; New Zealand Resource Report Resource Website 1+ mentions |
University of Auckland; Auckland; New Zealand (RRID:SCR_002615) | university | Public university in New Zealand that offers degrees in areas such as the arts, business, education, medical and health science, and law. | public university system, new zealand, degree program |
is related to: University of Auckland Biomedical Imaging Research Unit Molecular Devices ImageXpress Micro XLS is parent organization of: CellML is parent organization of: BEAST2 is parent organization of: ApiNATOMY |
Free | nlx_28115 | SCR_002615 | 2026-07-25 12:05:26 | 2 | |||||||||
|
Triangle BioSystems Resource Report Resource Website 10+ mentions |
Triangle BioSystems (RRID:SCR_002603) | TBSI | commercial organization | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 14,2026. A biomedical device company focused on developing and manufacturing neural hardware solutions for application in medical research using animals when bio-monitoring, recording and stimulation functions are needed. * Neural Recording Equipment * Neural Stimulation Equipment * Data Acquisition Hardware and Software | computational neuroscience, eeg, eeg, meg, electrocorticography, hardware, other software resource, physiological recording, software | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156006 | http://www.nitrc.org/projects/tbsi | SCR_002603 | Triangle BioSystems International | 2026-07-25 12:05:30 | 11 | ||||||
|
TetraMetrix Resource Report Resource Website 1+ mentions |
TetraMetrix (RRID:SCR_002601) | TetraMetrix | software resource | An open-source software project for distributed Tetrahedral Mesh Modeling and Analysis (TMMA) of multidimensional data. Tetrahedra are 3D, space filling, geometric objects that can be used to form representations and partitions of objects like volumes and shapes obtained from biomedical images (e.g., 3D MRI brain images). Tetrahedra are a natural extension of lines (1D) and surface triangulations (2D) which enable finite element analysis of irregular shapes, and permit a greater range of morphometric characterization of multidimensional objects. A beta version of the program is available for download. Please see the very brief instructions on the "Docs" tab on the left. | magnetic resonance, 3d, mri |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Laboratory of Neuro Imaging |
Free, Available for download, Freely available | nlx_156004 | SCR_002601 | 2026-07-25 12:05:25 | 1 | ||||||||
|
University of Athens; Athens; Greece Resource Report Resource Website 1+ mentions |
University of Athens; Athens; Greece (RRID:SCR_002607) | UoA | university | Public university in Athens, Greece that offers degree programs in health sciences, law and economics, and theology. | public university in greece |
is related to: EARIP is related to: ORBITO is related to: International AMD Genetics Consortium is parent organization of: Digital Repository Infrastructure Vision for European Research is parent organization of: University of Athens Biophysics and Bioinformatics Laboratory |
Free | ISNI:0000 0001 2155 0800, grid.5216.0, Wikidata:Q547867, Crossref funder ID:501100005187, nlx_94434 | https://ror.org/04gnjpq42 | SCR_002607 | University of Athens, National and Kapodistrian University of Athens | 2026-07-25 12:05:26 | 4 | ||||||
|
Open Journal Systems Resource Report Resource Website 1+ mentions |
Open Journal Systems (RRID:SCR_002642) | OJS | software resource | Open source software made freely available to journals worldwide for the purpose of making open access publishing a viable option for more journals, as open access can increase a journal's readership as well as its contribution to the public good on a global scale. OJS assists with every stage of the refereed publishing process, from submissions through to online publication and indexing. Through its management systems, its finely grained indexing of research, and the context it provides for research, OJS seeks to improve both the scholarly and public quality of refereed research. OJS Features # OJS is installed locally and locally controlled. # Editors configure requirements, sections, review process, etc. # Online submission and management of all content. # Subscription module with delayed open access options. # Comprehensive indexing of content part of global system. # Reading Tools for content, based on field and editors' choice. # Email notification and commenting ability for readers. # Complete context-sensitive online Help support. | journal management, publishing system, publication | is listed by: FORCE11 | Free, Available for download, Freely available | nlx_156071 | SCR_002642 | 2026-07-25 12:05:27 | 1 | ||||||||
|
PeptideShaker Resource Report Resource Website 100+ mentions |
PeptideShaker (RRID:SCR_002520) | software resource | Software providing a search engine independent platform for visualization of peptide and protein identification results from multiple search engines, currently supporting X!Tandem, MS-GF+, MS Amanda, OMSSA, MyriMatch, Comet, Tide, Mascot and mzIdentML. By combining the results from multiple search engines, while re-calculating PTM localization scores and redoing the protein inference, PeptideShaker attempts to give you the best possible understanding of your proteomics data. | standalone software, proteomics, mass spectrometry, java, search engine, omssa, xtandem, mascot, ms-gf, msamanda, myrimatch, comet, tide |
is listed by: OMICtools is related to: MS Amanda has parent organization: Google Code |
PMID:34709836 | Free, Available for download, Freely available | OMICS_03347 | http://peptide-shaker.googlecode.com | SCR_002520 | 2026-07-25 12:05:24 | 160 | |||||||
|
Memento Resource Report Resource Website 10+ mentions |
Memento (RRID:SCR_002634) | Memento | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 14,2026. An extension for Chrome to see a version of a resource as it existed at some date in the past, by entering that URI in your browser and by specifying the desired date in a browser plug-in. Or you can actually browse the Web of the past by selecting a date and clicking. Whatever you land upon will be versions of Web resources as they were around the selected date. (This will only work if previous versions are available somewhere on the Web.) | versioning, chrome, firefox, bookmarklet |
is listed by: FORCE11 has parent organization: Los Alamos National Laboratory has parent organization: Old Dominion University; Virginia; USA |
Library of Congress | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156058 | SCR_002634 | 2026-07-25 12:05:27 | 38 | |||||||
|
PennCNV Resource Report Resource Website 100+ mentions |
PennCNV (RRID:SCR_002518) | PennCNV | software resource | A free software tool for Copy Number Variation (CNV) detection from SNP genotyping arrays. Currently it can handle signal intensity data from Illumina and Affymetrix arrays. With appropriate preparation of file format, it can also handle other types of SNP arrays and oligonucleotide arrays. PennCNV implements a hidden Markov model (HMM) that integrates multiple sources of information to infer CNV calls for individual genotyped samples. It differs form segmentation-based algorithm in that it considered SNP allelic ratio distribution as well as other factors, in addition to signal intensity alone. In addition, PennCNV can optionally utilize family information to generate family-based CNV calls by several different algorithms. Furthermore, PennCNV can generate CNV calls given a specific set of candidate CNV regions, through a validation-calling algorithm. | imaging genomics, copy number variation, snp, genotyping array, array, oligonucleotide, hidden markov model, genotype, genome |
is listed by: OMICtools is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: VegaMC is related to: OpenBioinformatics.org has parent organization: University of Pennsylvania; Philadelphia; USA |
NIMH MH604687 | PMID:17921354 | Free | OMICS_00729, nlx_155921 | http://www.openbioinformatics.org/penncnv/ |
http://www.neurogenome.org/cnv/penncnv | SCR_002518 | PennCNV: copy number variation detection | 2026-07-25 12:05:28 | 349 | |||
|
OEI: fMRI compatible olfactometer Resource Report Resource Website 1+ mentions |
OEI: fMRI compatible olfactometer (RRID:SCR_002507) | OEI fMRI compatible olfactometer | instrument resource | A computerized, odor delivery device that can be used for basic research applications including mapping olfactory centers, cognitive / learning research, neuro-marketing among other uses. Additional products including tests for odor threshold, odor identification, odor discrimination and odor memory. | experiment control, hardware, magnetic resonance, stimulus presentation, odor, olfactory, instrument, equipment | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Commercial License | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_002507.pdf | nlx_155907 | http://www.nitrc.org/projects/oei, http://www.osmicenterprises.com/docs/OsmicFMRIOlfactomterManual%207-1-13.pdf | SCR_002507 | 2026-07-25 12:05:24 | 4 | ||||||
|
BINOCh Resource Report Resource Website 1+ mentions |
BINOCh (RRID:SCR_002778) | BINOCh | software resource | Software that infers the identity of transcription factors used to regulate cell response to stimulus or determine a program of differentiation. It uses genome wide information on enhancer proximal nucleosome occupancy, acquired using ChIP-seq targeting enhancer related histone modifications., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 15,2026. | proximal nucleosome occupancy data, transcription factor determination, differentiation |
is listed by: OMICtools has parent organization: Dana-Farber Cancer Institute has parent organization: Harvard University; Cambridge; United States |
PMID:21551136 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00500 | SCR_002778 | Binding Inference from Nucleosome Occupancy Changes (BINOCh), BINOCh - Binding Inference from Nucleosome Occupancy Changes, Binding Inference from Nucleosome Occupancy Changes | 2026-07-25 12:05:31 | 3 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the PRECISE-TBI Resources search. From here you can search through a compilation of resources used by PRECISE-TBI and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that PRECISE-TBI has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on PRECISE-TBI then you can log in from here to get additional features in PRECISE-TBI such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into PRECISE-TBI you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
