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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Ontology for Genetic Disease Investigations Resource Report Resource Website |
Ontology for Genetic Disease Investigations (RRID:SCR_010385) | OGDI | controlled vocabulary, data or information resource, ontology | Ontology used to model the scientific investigation, especially Genome-Wide Association Study (GWAS), to find out genetic susceptibility factor to disease, such as Diabetes. It models the genetic varaints, polymorphisms, statistical measurement, populations and other elements that are essential to determine a genetic susceptibility factor in GWAS study. It must be used with other two ontologies, in the case of Diabetes, :Ontology of Geographical Region (OGR) and Ontology of Glucose Metabolism Disorder (OGMD) . | owl | is listed by: BioPortal | nlx_157516 | SCR_010385 | 2026-07-28 09:42:49 | 0 | |||||||||
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International Classification of Diseases Version 10 Resource Report Resource Website 1+ mentions |
International Classification of Diseases Version 10 (RRID:SCR_010349) | ICD10 | controlled vocabulary, data or information resource, ontology | Ontology of the International Statistical Classification of Diseases and Related Health Problems (ICD-10). 10th rev. Geneva, a medical classification list by the World Health Organization (WHO). | umls | is listed by: BioPortal | nlx_157448 | SCR_010349 | 2026-07-28 09:42:47 | 3 | |||||||||
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International Classification of Diseases Version 10 - Procedure Coding System Resource Report Resource Website 1+ mentions |
International Classification of Diseases Version 10 - Procedure Coding System (RRID:SCR_010351) | ICD10PCS | controlled vocabulary, data or information resource, ontology | Ontology of the International Classification of Diseases Version 10, ICD-10-PCS (Procedure Coding System), 2009. | umls | is listed by: BioPortal | nlx_157450 | SCR_010351 | 2026-07-28 09:42:44 | 4 | |||||||||
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MR dataset acquisition Resource Report Resource Website |
MR dataset acquisition (RRID:SCR_010352) | ONL-MR-DA | controlled vocabulary, data or information resource, ontology | Ontology that is a module of the OntoNeuroLOG ontology, that covers the domain of Magnetic Resonance Imaging (MRI) dataset acquisition, i.e. MRI protocols, and MRI sequence parameters, developed in the context of the NeuroLOG project, a french project aiming at integrating distributed heterogeneous resources in neuroimaging. In particular, it includes a multi-axial classification of MR sequences. | owl neuroimaging, mri, data acquisition, mri protocol, mri sequence parameter | is listed by: BioPortal | French National Research Agency ANR-06-TLOG-024 | nlx_157461 | SCR_010352 | 2026-07-28 09:42:47 | 0 | ||||||||
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Metagenome and Microbes Environmental Ontology Resource Report Resource Website |
Metagenome and Microbes Environmental Ontology (RRID:SCR_010359) | MEO | controlled vocabulary, data or information resource, ontology | Ontology for organismal habitats (especially focused on microbes) | owl | is listed by: BioPortal | nlx_157476 | SCR_010359 | 2026-07-28 09:42:44 | 0 | |||||||||
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Minimal Information about any Sequence Controlled Vocabularies Resource Report Resource Website |
Minimal Information about any Sequence Controlled Vocabularies (RRID:SCR_010363) | MIXSCV | controlled vocabulary, data or information resource, ontology | Controlled vocabularies for the MIxS (Minimal Information about any Sequence) family of metadata checklists. See http://gensc.org/gc_wiki/index.php/MIxS for details on the MIxS checklists. | obo | is listed by: BioPortal | nlx_157481 | SCR_010363 | Minimal Information about any Sequence (MIxS) Controlled Vocabularies, MIxS Controlled Vocabularies | 2026-07-28 09:42:45 | 0 | ||||||||
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Gene Regulation Ontology Resource Report Resource Website |
Gene Regulation Ontology (RRID:SCR_010590) | GRO, BOOTStrep | controlled vocabulary, data or information resource, ontology | Ontology that is a conceptual model for the domain of gene regulation. It covers processes that are linked to the regulation of gene expression as well as physical entities that are involved in these processes (such as genes and transcription factors) in terms of ontology classes and semantic relations between classes. GRO is intended to represent common knowledge about gene regulation in a formal way rather than representing extremely fine-grained classes as can be found in ontologies such as the Gene Ontology (GO) (created for data base annotation purposes) and various relevant databases. The main purpose of the ontology is to support NLP applications. It has a particular focus on the relations between processes and the molecules (participants) involved. The basic structure of the GRO is a direct acyclic graph (DAG) with ontology classes as nodes and is-a relations between classes as edges. The taxonomic backbone is further enriched by several semantic relation types (part-of, from-species, participates-in with the two sub-relations agent-of and patient-of). | owl, genomic, proteomic, biological process, gene regulation, gene expression, gene, transcription factor, process, molecule, biological_process |
is listed by: BioPortal is listed by: OBO has parent organization: European Bioinformatics Institute |
nlx_157415, nlx_46399 | http://www.ebi.ac.uk/Rebholz-srv/GRO/GRO.html, http://www.ebi.ac.uk/Rebholz-srv/GRO/GRO_latest | SCR_010590 | Gene Regulation Ontology - Ontological resource from the BOOTStrep project for the representation of gene regulation events | 2026-07-28 09:42:49 | 0 | |||||||
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Spatial Ontology Resource Report Resource Website |
Spatial Ontology (RRID:SCR_007860) | BSPO | controlled vocabulary, data or information resource, ontology | A small ontology for anatomical spatial references, such as dorsal, ventral, axis, and so forth. | obo | is listed by: BioPortal | SCR_007860 | 2026-07-28 09:41:55 | 0 | ||||||||||
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Human Dermatological Disease Ontology Resource Report Resource Website 1+ mentions |
Human Dermatological Disease Ontology (RRID:SCR_007648) | DERMO | controlled vocabulary, data or information resource, ontology | Ontology of human dermatologic disease | obo | is listed by: BioPortal | Dermatologic disease | nlx_157428 | SCR_007648 | 2026-07-28 09:42:08 | 1 | ||||||||
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Host Pathogen Interactions Ontology Resource Report Resource Website |
Host Pathogen Interactions Ontology (RRID:SCR_007647) | HPIO | controlled vocabulary, data or information resource, ontology | Ontology for host pathogen interactions in farmed animals | owl | is listed by: BioPortal | nlx_157427 | SCR_007647 | 2026-07-28 09:41:53 | 0 | |||||||||
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RNA Ontology Resource Report Resource Website 1+ mentions |
RNA Ontology (RRID:SCR_003470) | RNAO | controlled vocabulary, data or information resource, ontology | An ontology to capture all aspects of RNA - from primary sequence to alignments, secondary and tertiary structure from base pairing and base stacking to sophisticated motifs. | owl, obo, molecular structure, molecular, rna, sequence, alignment, structure, base pairing, base stacking, motif |
is listed by: BioPortal is listed by: OBO is listed by: Google Code |
Free, Available for download, Freely available | nlx_157566 | http://purl.bioontology.org/ontology/RNAO, http://rnao.googlecode.com/svn/trunk/rnao.obo | SCR_003470 | 2026-07-28 09:40:48 | 1 | |||||||
|
Influenza Ontology Resource Report Resource Website |
Influenza Ontology (RRID:SCR_003346) | FLU | controlled vocabulary, data or information resource, ontology | An application ontology established by a collaborative group of influenza researchers that includes consolidated influenza sequence and surveillance terms from resources such as the BioHealthBase (BHB), a Bioinformatics Resource Center (BRC) for Biodefense and Emerging and Re-emerging Infectious Diseases, the Centers for Excellence in Influenza Research and Surveillance (CEIRS) | owl, health, pathological, organismal, cellular, sequence, surveillance |
is listed by: BioPortal is listed by: OBO is related to: Information Artifact Ontology has parent organization: University of Maryland; Maryland; USA |
Influenza | Free, Freely available | nlx_157440 | http://purl.obolibrary.org/obo/flu.owl, http://influenzaontologywiki.igs.umaryland.edu/ | http://purl.bioontology.org/ontology/FLU | SCR_003346 | 2026-07-28 09:40:40 | 0 | |||||
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Mouse Experimental Design Ontology Resource Report Resource Website |
Mouse Experimental Design Ontology (RRID:SCR_003879) | MEDO | controlled vocabulary, data or information resource, ontology | Ontology of experimental design for high-throughput mouse analysis pipelines. | owl | is listed by: BioPortal | nlx_157487 | SCR_003879 | 2026-07-28 09:40:51 | 0 | |||||||||
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Cell Type Ontology Resource Report Resource Website 1+ mentions |
Cell Type Ontology (RRID:SCR_004251) | CL | controlled vocabulary, data or information resource, ontology | Ontology designed as a structured controlled vocabulary for cell types. It was constructed for use by the model organism and other bioinformatics databases. It includes cell types from prokaryotes, mammals, and fungi. The ontology is available in the formats adopted by the Open Biological Ontologies umbrella and is designed to be used in the context of model organism genome and other biological databases. | cell ontology, ontology repository |
is listed by: BioPortal is listed by: Ontology Lookup Service is related to: CELDA Ontology is related to: OBO is related to: Cell Line Knowledge Base |
BBSRC ; MRC ; NIH ; NSF DBI-9978564; NSF PGRP-0321666 |
PMID:15693950 | Free, Freely available | nlx_26501 | http://purl.bioontology.org/ontology/CL | http://cellontology.org, http://www.obofoundry.org/cgi-bin/detail.cgi?id=cell, | SCR_004251 | cellontology.org, Obo-cell-type, Cell Ontology | 2026-07-28 09:40:56 | 6 | |||
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Clinical Signs and Symptoms Ontology Resource Report Resource Website |
Clinical Signs and Symptoms Ontology (RRID:SCR_007226) | CSSO | controlled vocabulary, data or information resource, ontology | An ontology for describing clinical signs and symptoms. | owl | is listed by: BioPortal | nlx_157365 | http://mdb.bio.titech.ac.jp/csso | SCR_007226 | 2026-07-28 09:41:55 | 0 | ||||||||
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Skin Physiology Ontology Resource Report Resource Website |
Skin Physiology Ontology (RRID:SCR_006253) | SPO | controlled vocabulary, data or information resource, ontology | THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 23, 2014. Description not available. | owl | is listed by: BioPortal | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157589 | SCR_006253 | 2026-07-28 09:41:30 | 0 | ||||||||
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Physician Data Query Resource Report Resource Website 1+ mentions |
Physician Data Query (RRID:SCR_006833) | PDQ | people resource, data or information resource, clinical trial, registry, database, ontology, controlled vocabulary | NCI''s comprehensive cancer database that contains summaries on a wide range of cancer topics; a registry of 8,000+ open and 19,000+ closed cancer clinical trials from around the world; a directory of professionals who provide genetics services; the NCI Dictionary of Cancer Terms, with definitions for 6,800+ cancer and medical terms; and the NCI Drug Dictionary, which has information on 2,300+ agents used in the treatment of cancer or cancer-related conditions. The PDQ cancer information summaries are peer reviewed and updated monthly by six editorial boards comprised of specialists in adult treatment, pediatric treatment, supportive care, screening and prevention, genetics, and complementary and alternative medicine. The Boards review current literature from more than 70 biomedical journals, evaluate its relevance, and synthesize it into clear summaries. Many of the summaries are also available in Spanish. | adult, pediatric, child, alternative, breast, clinical trial, colorectal, hypercalcemia, legal, lung, medicine, medullary, nausea, ovarian, pain, pathophysiology, pediatric, pharmaceutical, physician, prevention, prognosis, prostate, psychosocial, query, risk factor, screening, social, syndrome, thyroid, treatment, umls, genetics, medical, drug, peer review |
is listed by: BioPortal has parent organization: National Cancer Institute |
Cancer, Cancer-related condition | NCI | nif-0000-21318 | SCR_006833 | PDQ - NCI''s Comprehensive Cancer Database | 2026-07-28 09:41:38 | 2 | ||||||
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Cell Cycle Ontology Resource Report Resource Website |
Cell Cycle Ontology (RRID:SCR_007085) | CCO | controlled vocabulary, data or information resource, ontology | An application ontology integrating knowledge about the eukaryotic cell cycle. | obo | is listed by: BioPortal | nlx_157355 | http://www.semantic-systems-biology.org/cco/ | SCR_007085 | 2026-07-28 09:41:50 | 0 | ||||||||
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MedlinePlus Resource Report Resource Website 50+ mentions |
MedlinePlus (RRID:SCR_006512) | MedlinePlus | data or information resource, database, video resource | Database of authoritative health information about diseases, conditions, and wellness issues that offers reliable, up-to-date health information for free. It contains the latest treatments, information on drugs and supplements, the meanings of words, and medical videos and illustrations. Links to the latest topic or disease specific medical research or clinical trials are also offered. * MedlinePlus pages contain carefully selected links to Web resources with health information on over 900 topics. ** The MedlinePlus health topic pages include links to current news on the topic and related information. You can also find preformulated searches of the MEDLINE/PubMed database, which allow you to find references to latest health professional articles on your topic. * The A.D.A.M. medical encyclopedia brings health consumers an extensive library of medical images and videos, as well as over 4,000 articles about diseases, tests, symptoms, injuries, and surgeries. * The Merriam-Webster medical dictionary allows you to look up definitions and spellings of medical words. * Drug and supplement information is available from the American Society of Health-System Pharmacists (ASHP) via AHFS Consumer Medication Information, and Natural Medicines Comprehensive Database Consumer Version. ** AHFS Consumer Medication Information provides extensive information about more than 1,000 brand name and generic prescription and over-the-counter drugs, including side effects, precautions and storage for each drug. ** Natural Medicines Comprehensive Database Consumer Version is an evidence-based collection of information on alternative treatments. MedlinePlus has 100 monographs on herbs and supplements. * Interactive tutorials from the Patient Education Institute explain over 165 procedures and conditions in easy-to-read language. An XML File for the MedlinePlus Health Topics is available, http://www.nlm.nih.gov/medlineplus/xmldescription.html. The ontology is available through Bioportal, http://bioportal.bioontology.org/ontologies/MEDLINEPLUS | drug, herb, medication, over-the-counter, prescription, supplement, health, clinical trial, disease, condition, image, test, symptom, injury, surgery, generic drug, umls, ontology, gold standard |
is listed by: BioPortal is related to: EBIMed is related to: MalaCards has parent organization: National Library of Medicine |
Free | nif-0000-10315 | SCR_006512 | MedlinePlus Health Topics, MedlinePlus - Drugs, Supplements and Herbal Information | 2026-07-28 09:41:34 | 99 |
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