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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Taxonomic Rank Vocabulary Resource Report Resource Website |
Taxonomic Rank Vocabulary (RRID:SCR_010430) | TAXRANK | controlled vocabulary, data or information resource, ontology | A vocabulary of taxonomic ranks intended to replace the sets of rank terms found in the Teleost Taxonomy Ontology, the OBO translation of the NCBI taxonomy and similar OBO taxonomy ontologies. It provides terms for taxonomic ranks drawn from both the NCBI taxonomy database and from a rank vocabulary developed for the TDWG biodiversity information standards group. Cross references to appearances of each term in each source are provided. Consistent with its intended use as a vocabulary of labels, there is no relation specifying an ordering of the rank terms. | obo | is listed by: BioPortal | nlx_157606 | SCR_010430 | 2026-07-28 09:42:50 | 0 | |||||||||
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Ontology of Geographical Region Resource Report Resource Website |
Ontology of Geographical Region (RRID:SCR_010398) | OGR | controlled vocabulary, data or information resource, ontology | Ontology that is used with other ontologies to represent the genetic susceptibility factors of diabetes. This OWL ontology classified the geograhical regions related vocabularies extracted from UMLS. | owl | is listed by: BioPortal | Diabetes | nlx_157530 | SCR_010398 | 2026-07-28 09:42:45 | 0 | ||||||||
|
Taxonomy for Rehabilitation of Knee Conditions Resource Report Resource Website |
Taxonomy for Rehabilitation of Knee Conditions (RRID:SCR_010431) | TRAK | controlled vocabulary, data or information resource, ontology | Ontology that formally models information relevant for the rehabilitation of knee conditions. It provides the framework that can be used to collect coded data in sufficient detail to support epidemiologic studies so that the most effective treatment components can be identified, new interventions developed and the quality of future randomized control trials improved to incorporate a control intervention that is well defined and reflects clinical practice. | obo | is listed by: BioPortal | nlx_157607 | SCR_010431 | 2026-07-28 09:42:46 | 0 | |||||||||
|
Traditional Medicine Other Factors Value Set Resource Report Resource Website |
Traditional Medicine Other Factors Value Set (RRID:SCR_010437) | TM-OTHER-FACTORS | controlled vocabulary, data or information resource, ontology | Ontology of the value set for the Other Factors property of the International Classification of Traditional Medicine (ICTM). | owl | is listed by: BioPortal | nlx_157614 | SCR_010437 | 2026-07-28 09:42:46 | 0 | |||||||||
|
Tribolium Ontology Resource Report Resource Website |
Tribolium Ontology (RRID:SCR_010440) | TRON | controlled vocabulary, data or information resource, ontology | Ontology about the anatomical structures of the red flour beetle Tribolium castaneum in the developmental stages larva, pupa and adult. | obo | is listed by: BioPortal | nlx_157617 | SCR_010440 | 2026-07-28 09:42:46 | 0 | |||||||||
|
Plant Anatomy Resource Report Resource Website |
Plant Anatomy (RRID:SCR_010408) | PAE | controlled vocabulary, data or information resource, ontology | THIS RESOURCES IS NO LONGER IN SERVICE, documented on April 23, 2014. REPLACED BY: Plant Ontology (PO). A controlled vocabulary of plant morphological and anatomical structures representing organs, tissues, cell types, and their biological relationships based on spatial and developmental organization. Note that this has been subsumed into the PO. This file is created by filtering plant_ontology_assert.obo to contain only terms from the plant anatomical entity branch of the PO. For more information, please see: http://palea.cgrb.oregonstate.edu/viewsvn/Poc/tags/live/ | obo |
is listed by: BioPortal has parent organization: Plant Ontology |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157553 | SCR_010408 | 2026-07-28 09:42:46 | 0 | ||||||||
|
NanoParticle Ontology Resource Report Resource Website 1+ mentions |
NanoParticle Ontology (RRID:SCR_010369) | NPO | controlled vocabulary, data or information resource, ontology | An ontology that represents the basic knowledge of physical, chemical and functional characteristics of nanotechnology as used in cancer diagnosis and therapy. | owl | is listed by: BioPortal | Cancer | nlx_157497 | http://www.nano-ontology.org | SCR_010369 | 2026-07-28 09:42:45 | 1 | |||||||
|
National Cancer Institute Thesaurus Resource Report Resource Website |
National Cancer Institute Thesaurus (RRID:SCR_010370) | NCIT | controlled vocabulary, data or information resource, ontology | A vocabulary for clinical care, translational and basic research, and public information and administrative activities. | owl |
is used by: DisGeNET is listed by: BioPortal |
nlx_157498 | http://ncicb.nci.nih.gov/core/EVS | SCR_010370 | 2026-07-28 09:42:48 | 0 | ||||||||
|
Natural Products Ontology Resource Report Resource Website |
Natural Products Ontology (RRID:SCR_010373) | NATPRO | controlled vocabulary, data or information resource, ontology | An ontology for describing biological activities of natural products. | owl | is listed by: BioPortal | nlx_157501 | SCR_010373 | 2026-07-28 09:42:48 | 0 | |||||||||
|
Radiology Lexicon Resource Report Resource Website |
Radiology Lexicon (RRID:SCR_010418) | RADLEX | controlled vocabulary, data or information resource, ontology | A controlled terminology for radiology-a single unified source of radiology terms for radiology practice, education, and research. For license information see : http://www.rsna.org/uploadedFiles/RSNA/Content/Informatics/radlex_public_license_version_1-0-1.pdf Converted to use OWL format submissions | owl | is listed by: BioPortal | nlx_157567 | SCR_010418 | 2026-07-28 09:42:50 | 0 | |||||||||
|
Robert Hoehndorf Version of MeSH Resource Report Resource Website |
Robert Hoehndorf Version of MeSH (RRID:SCR_010419) | RH-MESH | controlled vocabulary, data or information resource, ontology | Ontology of a modified version of Medical Subjects Headings Thesaurus 2014, that is an OWL representation of MeSH so that it can be integrated with other ontologies represented in OWL. It contains all terms that are in MeSH and in the MeSH concept tree, including the pharmacological actions (represented as subclass relations). Concepts in the MeSH concept tree are merged with MeSH term ids. Note that, while this ontology is composed of MeSH terms, it does not correspond directly to UMLS MeSH. In particular, a single term in UMLS MeSH often results in multiple classes in this ontology. For example, in MeSH there is a single term with the label Heart. The internal code (unique identifier) for this term is A07.541. In this ontology there are two entirely different terms, both of which have the label Heart. The codes for these terms are A07.541 and D006321. | owl |
is listed by: BioPortal is related to: MeSH |
nlx_157577 | SCR_010419 | 2026-07-28 09:42:45 | 0 | |||||||||
|
Portfolio Management Application Resource Report Resource Website |
Portfolio Management Application (RRID:SCR_010411) | PMA | controlled vocabulary, data or information resource, ontology | Ontology of a system for tracking grants and producing reports - Users can access grant data through a query interface and a variety of pre-defined forms and reports. | owl | is listed by: BioPortal | nlx_157559 | SCR_010411 | 2026-07-28 09:42:46 | 0 | |||||||||
|
NeuroMorpho.Org species ontology old Resource Report Resource Website |
NeuroMorpho.Org species ontology old (RRID:SCR_010379) | NMOSP_1_6 | controlled vocabulary, data or information resource, ontology | Species taxonomy for the data curated in NeuroMorpho.Org. The existing ontologies are re-used as needed as the new metadata information for species and strains is deposited in NeuroMorpho.Org database. This species hierarchy consists of 56% of NCBI taxonomy and 39% of Rat strain ontology. The remaining 5% mostly consists of new concepts and few others from NIFSTD and MESH. | obo |
is listed by: BioPortal has parent organization: NeuroMorpho.Org |
nlx_157509 | SCR_010379 | 2026-07-28 09:42:48 | 0 | |||||||||
|
Protein-Protein Interaction Ontology Resource Report Resource Website |
Protein-Protein Interaction Ontology (RRID:SCR_010413) | PPIO | controlled vocabulary, data or information resource, ontology | A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. | obo |
is listed by: BioPortal has parent organization: HUPO Proteomics Standards Initiative |
nlx_157561 | SCR_010413 | 2026-07-28 09:42:45 | 0 | |||||||||
|
Proteomics Data and Process Provenance Ontology Resource Report Resource Website |
Proteomics Data and Process Provenance Ontology (RRID:SCR_010414) | PROPREO | controlled vocabulary, data or information resource, ontology | A comprehensive proteomics data and process provenance ontology. | owl | is listed by: BioPortal | nlx_157562 | SCR_010414 | 2026-07-28 09:42:47 | 0 | |||||||||
|
Provenance Ontology Resource Report Resource Website 10+ mentions |
Provenance Ontology (RRID:SCR_010415) | PROVO | controlled vocabulary, data or information resource, ontology | Ontology that expresses the PROV Data Model using the OWL2 Web Ontology Language (OWL2) providing a set of classes, properties, and restrictions that can be used to represent and interchange provenance information generated in different systems and under different contexts. It can also be specialized to create new classes and properties to model provenance information for different applications and domains. | owl | is listed by: BioPortal | nlx_157563 | SCR_010415 | PROV-O | 2026-07-28 09:42:50 | 10 | ||||||||
|
Quantitative Imaging Biomarker Ontology Resource Report Resource Website |
Quantitative Imaging Biomarker Ontology (RRID:SCR_010417) | QIBO | controlled vocabulary, data or information resource, ontology | An ontology that describes various concepts in quantitative imaging biomarkers. | owl | is listed by: BioPortal | nlx_157565 | SCR_010417 | 2026-07-28 09:42:47 | 0 | |||||||||
|
Non-Randomized Controlled Trials Ontology Resource Report Resource Website |
Non-Randomized Controlled Trials Ontology (RRID:SCR_010380) | NONRCTO | controlled vocabulary, data or information resource, ontology | Ontology to help the systematic review and meta-analysis process of non randomized clinical trials. | owl | is listed by: BioPortal | nlx_157510 | SCR_010380 | 2026-07-28 09:42:44 | 0 | |||||||||
|
Nursing Care Coordination Ontology Resource Report Resource Website |
Nursing Care Coordination Ontology (RRID:SCR_010381) | NCCO | controlled vocabulary, data or information resource, ontology | Ontology that contains activities that nurses use while coordinating care among patients. | owl | is listed by: BioPortal | nlx_157511 | SCR_010381 | 2026-07-28 09:42:45 | 0 | |||||||||
|
Ontological Knowledge Base Model for Cystic Fibrosis Resource Report Resource Website |
Ontological Knowledge Base Model for Cystic Fibrosis (RRID:SCR_010382) | ONTOKBCF | controlled vocabulary, data or information resource, ontology | An ontological knowledge base model for cystic fibrosis. There are molecular genetic information (i.e. gene mutations) and health information included in OntoKBCF. The purposes of OntoKBCF include management of molecular genetic information and health information and embedding OntoKBCF into EHR settings. | owl | is listed by: BioPortal | Cystic fibrosis | nlx_157513 | SCR_010382 | 2026-07-28 09:42:49 | 0 |
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