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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Cellular microscopy phenotype ontology Resource Report Resource Website |
Cellular microscopy phenotype ontology (RRID:SCR_010282) | CMPO | controlled vocabulary, data or information resource, ontology | A species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations. CMPO is an application ontology developed in OWL that contains precomposed phenotypes descriptions that are defined using the Gene Ontology (GO) and the Phenotype Trait Ontology (PATO). | owl, phenotype | is listed by: BioPortal | nlx_157357 | https://github.com/EBISPOT/CMPO | SCR_010282 | 2026-07-28 09:42:45 | 0 | ||||||||
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ABA Adult Mouse Brain Ontology Resource Report Resource Website |
ABA Adult Mouse Brain Ontology (RRID:SCR_010286) | ABA-AMB | controlled vocabulary, data or information resource, ontology | Allen Brain Atlas P56 Mouse Ontology | owl |
is listed by: BioPortal has parent organization: Allen Institute for Brain Science |
nlx_157311 | SCR_010286 | Allen Brain Atlas (ABA) Adult Mouse Brain Ontology, Allen Brain Atlas Adult Mouse Brain Ontology | 2026-07-28 09:42:42 | 0 | ||||||||
|
AEO Resource Report Resource Website |
AEO (RRID:SCR_010287) | AEO | controlled vocabulary, data or information resource, ontology | An ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology, to about 200 classes using the is_a relationship; it thus provides a detailed type classification for tissues. The new classes were chosen for their use in categorizing the major vertebrate and invertebrate anatomy ontologies at a granularity adequate for tissues of a single cell type. The ontology should be useful in increasing the amount of knowledge in anatomy ontologies, facilitating annotation and enabling interoperability across anatomy ontologies | obo |
is listed by: BioPortal has parent organization: OBO |
nlx_157312 | http://purl.bioontology.org/ontology/AEO | SCR_010287 | Anatomical Entity Ontology, Ontology of Anatomical Entities - AEO | 2026-07-28 09:42:42 | 0 | |||||||
|
African Traditional Medicine Ontology Resource Report Resource Website |
African Traditional Medicine Ontology (RRID:SCR_010288) | ATMO | controlled vocabulary, data or information resource, ontology | Ontology that describes the actors'' function (healer, fetishist or soothsayer); the different types of proposed process treatment, the symptom''s roles and the disease consideration. | obo | is listed by: BioPortal | nlx_157313 | SCR_010288 | 2026-07-28 09:42:45 | 0 | |||||||||
|
Biomedical Research Integrated Domain Group Model Resource Report Resource Website |
Biomedical Research Integrated Domain Group Model (RRID:SCR_010265) | BRIDG | controlled vocabulary, data or information resource, ontology | An instance of a Domain Analysis Model (DAM) with the goal of producing a shared view of the dynamic and static semantics for the domain of protocol-driven research and its associated regulatory artifacts. This domain of interest is further defined as: Protocol-driven research and its associated regulatory artifacts: i.e. the data, organization, resources, rules, and processes involved in the formal assessment of the utility, impact, or other pharmacological, physiological, or psychological effects of a drug, procedure, process, or device on a human, animal, or other subject or substance plus all associated regulatory artifacts required for or derived from this effort, including data specifically associated with post-marketing adverse event reporting. The Biomedical Research Integrated Domain Group (BRIDG) Model is a collaborative effort engaging stakeholders from the Clinical Data Interchange Standards Consortium (CDISC), the HL7 Regulated Clinical Research Information Management Technical Committee (RCRIM TC), the National Cancer Institute (NCI) and its Cancer Biomedical Informatics Grid (caBIG??), and the US Food and Drug Administration (FDA). Source repository: https://ncisvn.nci.nih.gov/WebSVN/listing.php?repname=bridg-model&path=%2Ftrunk%2FModel+-+OWL%2F& | owl |
is listed by: BioPortal has parent organization: National Cancer Institute |
nlx_157336 | http://www.bridgmodel.org/ | SCR_010265 | BRIDG Model | 2026-07-28 09:42:41 | 0 | |||||||
|
Immune Disorder Ontology Resource Report Resource Website |
Immune Disorder Ontology (RRID:SCR_010344) | IMMDIS | controlled vocabulary, data or information resource, ontology | Ontology generated as part of the Bioinformatics Integration Support Contract (BISC) that is based on the National Library of Medicine (NLM) Medical Subject Headings; National Cancer Institute Thesaurus; International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM); ICD-10; and other open source public databases. Specific information may be available about a class, including Preferred_Name, DEFINITION, Synonym, etc. | obo, health, immunology | is listed by: BioPortal | NIAID ; Division of Allergy Immunology and Transplantation |
nlx_157438 | SCR_010344 | 2026-07-28 09:42:43 | 0 | ||||||||
|
InterNano Nanomanufacturing Taxonomy Resource Report Resource Website 1+ mentions |
InterNano Nanomanufacturing Taxonomy (RRID:SCR_010346) | InterNano | controlled vocabulary, data or information resource, ontology | A custom-built terminology to describe the nanomanufacturing enterprise. | owl | is listed by: BioPortal | NSF CMMI-1025020 | nlx_157442 | SCR_010346 | 2026-07-28 09:42:47 | 1 | ||||||||
|
Interaction Network Ontology Resource Report Resource Website 1+ mentions |
Interaction Network Ontology (RRID:SCR_010347) | INO | controlled vocabulary, data or information resource, ontology | An ontology in the domain of interaction network that aims to standardize interaction network annotation, integrate various interaction network data, and support computer-assisted reasoning. It is aimed to represent general interactions (e.g., molecular interactions) and interaction networks (e.g., Bayesian network). INO was initiated by supporting literature mining related to interactions and interaction networks. INO aligns with BFO. INO is a community-based ontology, and its development follows the OBO Foundry principles. | owl | is listed by: BioPortal | nlx_157443 | SCR_010347 | 2026-07-28 09:42:43 | 2 | |||||||||
|
Vertebrate Homologous Organ Group Ontology Resource Report Resource Website |
Vertebrate Homologous Organ Group Ontology (RRID:SCR_010444) | VHOG | controlled vocabulary, data or information resource, ontology | A multi-species anatomical ontology for the vertebrate lineage, developed as part of the Bgee project. The mapping to species-specific anatomical ontologies is provided as a separated file: http://bgee.unil.ch/download/organ_association_vHOG.txt This mapping represents homology-strict relationships, in the sense of HOM:0000007 historical homology. Each mapping has been manually reviewed, and theye provide confidence codes and references when available. | obo | is listed by: BioPortal | nlx_157623 | SCR_010444 | 2026-07-28 09:42:48 | 0 | |||||||||
|
Veterans Health Administration National Drug File Resource Report Resource Website |
Veterans Health Administration National Drug File (RRID:SCR_010445) | VANDF, NDF | controlled vocabulary, data or information resource, ontology | Ontology that includes information on clinical drugs, drug classes, ingredients and National Drug Code (NDC) Directory codes. | umls | is listed by: BioPortal | nlx_157626 | SCR_010445 | 2026-07-28 09:42:51 | 0 | |||||||||
|
Vital Sign Ontology Resource Report Resource Website 1+ mentions |
Vital Sign Ontology (RRID:SCR_010446) | VSO | controlled vocabulary, data or information resource, ontology | An extension of the Ontology for General Medical Science (OGMS) that covers the four consensus human vital signs: blood pressure, body temperature, respiration rate, pulse rate. VSO provides also a controlled structured vocabulary for describing vital signs measurement data, the various processes of measuring vital signs, and the various devices and anatomical entities participating in such measurements. | owl | is listed by: BioPortal | nlx_157627 | SCR_010446 | 2026-07-28 09:42:46 | 1 | |||||||||
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suicideo Resource Report Resource Website |
suicideo (RRID:SCR_010451) | SuicidO | controlled vocabulary, data or information resource, ontology | Ontology of suicidology. | owl | is listed by: BioPortal | nlx_157632 | SCR_010451 | 2026-07-28 09:42:48 | 0 | |||||||||
|
Pseudogene Resource Report Resource Website 100+ mentions |
Pseudogene (RRID:SCR_010453) | pseudo | controlled vocabulary, data or information resource, ontology | Ontology for pseudogenes including biological feature, classified type, Evidence code, and subcellular origin. | obo | is listed by: BioPortal | nlx_157640 | SCR_010453 | 2026-07-28 09:42:46 | 141 | |||||||||
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Terminology for the Description of Dynamics Resource Report Resource Website 1+ mentions |
Terminology for the Description of Dynamics (RRID:SCR_010454) | TEDDY | controlled vocabulary, data or information resource, ontology | Ontology for dynamical behaviors, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology. | Ontology for dynamical behaviors, Systems Biology, Synthetic Biology, ontology, owl, dynamical behaviors, observable dynamical phenomena, control elements, bio-models and biological systems | is listed by: BioPortal | nlx_157641 | http://purl.bioontology.org/ontology/MO | SCR_010454 | 2026-07-28 09:42:48 | 9 | ||||||||
|
Symptom Ontology Resource Report Resource Website |
Symptom Ontology (RRID:SCR_010388) | SYMP | controlled vocabulary, data or information resource, ontology | Ontology designed around the guiding concept of a symptom being: A perceived change in function, sensation or appearance reported by a patient indicative of a disease. Understanding the close relationship of Signs and Symptoms, where Signs are the objective observation of an illness, the Symptom Ontology will work to broaden it''s scope to capture and document in a more robust manor these two sets of terms. Understanding that at times, the same term may be both a Sign and a Symptom | owl | is listed by: BioPortal | nlx_157599 | SCR_010388 | 2026-07-28 09:42:49 | 0 | |||||||||
|
STATistics Ontology Resource Report Resource Website |
STATistics Ontology (RRID:SCR_010421) | STATO | controlled vocabulary, data or information resource, ontology | A general-purpose STATistics Ontology to provide coverage for processes such as statistical tests, their conditions of applications, and information needed or resulting from statistical methods, such as probability distributions, variable, spread and variation metrics. STATO also covers aspects of experimental design and description of plots and graphical representations commonly used to provide visual cues of data distribution or layout and to assist review of the results. | owl | is listed by: BioPortal | nlx_157579 | SCR_010421 | 2026-07-28 09:42:50 | 0 | |||||||||
|
Sage Bionetworks Synapse Ontology Resource Report Resource Website |
Sage Bionetworks Synapse Ontology (RRID:SCR_010422) | SYN | controlled vocabulary, data or information resource, ontology | Controlled vocabulary used for various entity properties in the Synapse platform. | owl | is listed by: BioPortal | nlx_157580 | SCR_010422 | 2026-07-28 09:42:45 | 0 | |||||||||
|
Sample Processing and Separation Techniques Ontology Resource Report Resource Website |
Sample Processing and Separation Techniques Ontology (RRID:SCR_010423) | SEP | controlled vocabulary, data or information resource, ontology | A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments, such as, and including, gel electrophoresis, column chromatography, capillary electrophoresis, centrifugation and so on. Developed jointly by the HUPO Proteomics Standards Initiative and The Metabolomics Standards Initiative. | obo |
is listed by: BioPortal has parent organization: HUPO Proteomics Standards Initiative |
nlx_157581 | SCR_010423 | 2026-07-28 09:42:47 | 0 | |||||||||
|
Ontology of Biological and Clinical Statistics Resource Report Resource Website 1+ mentions |
Ontology of Biological and Clinical Statistics (RRID:SCR_010391) | OBCS | controlled vocabulary, data or information resource, ontology | A biomedical ontology in the domain of biological and clinical statistics that is primarily targeted for statistical representation in the fields in biological, biomedical, and clinical domains. It uses the Basic Formal Ontology (BFO) as the upper level ontology. OBCS imports all biostatistics related terms in the Ontology for Biomedical Investigations (OBI) including all logical axioms. | owl | is listed by: BioPortal | nlx_157524 | SCR_010391 | 2026-07-28 09:42:49 | 1 | |||||||||
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Ontology of Clinical Research Resource Report Resource Website 1+ mentions |
Ontology of Clinical Research (RRID:SCR_010392) | OCRE | controlled vocabulary, data or information resource, ontology | Ontology to support systematic description of, and interoperable queries on, human studies and study elements. | owl | is listed by: BioPortal | nlx_157525 | SCR_010392 | 2026-07-28 09:42:45 | 1 |
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