Searching the RRID Resource Information Network

Our searching services are busy right now. Please try again later

  • Register
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X

Leaving Community

Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.

No
Yes

Preparing word cloud

×

SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

Search

Type in a keyword to search

Filter by records added date
See new records

Options


Facets


Recent searches

Snippet view Table view
Click the to add this resource to a Collection

27,235 Results - per page

Show More Columns | Download Top 1000 Results

Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Authority Synonyms Record Last Update Mentions Count
HPC-CLUST
 
Resource Report
Resource Website
1+ mentions
HPC-CLUST (RRID:SCR_005052) HPC-CLUST software resource A set of tools designed to cluster large numbers (>1 million) of pre-aligned nucleotide sequences. It performs the clustering of sequences using the Hierarchical Clustering Algorithm (HCA). There are currently three different cluster metrics implemented: single-linkage, complete-linkage, and average-linkage. In addition, there are currently four sequence distance functions implemented, these are: identity (gap-gap counting as match), nogap (gap-gap being ignored), nogap-single (like nogap, but consecutive gap-nogap''s count as a single mismatch), tamura (distance is calculated with the knowledge that transitions are more likely than transversions). One advantage that HCA has over other algorithms is that instead of producing only the clustering at a given threshold, it produces the set of merges occuring at each threshold. With this approach, the clusters can afterwards very quickly be reported for every arbitrary threshold with little extra computation. This approach also allows the plotting of the variation of number of clusters with clustering threshold without requiring the clustering to be run for each threshold independently. Another feature of the way HPC-CLUST is implemented is that the single-, complete-, and average-linkage clusterings can be computed in a single run with little overhead. c++, mpi is listed by: OMICtools
has parent organization: University of Zurich; Zurich; Switzerland
PMID:24215029 OMICS_01446 SCR_005052 SciCrunch Registry 2026-10-31 12:14:08 5
Open PHACTS
 
Resource Report
Resource Website
10+ mentions
Open PHACTS (RRID:SCR_005050) OPS consortium, data or information resource, database, organization portal, portal, software resource Project that developed an open access discovery platform, called Open Pharmacological Space (OPS), via a semantic web approach, integrating pharmacological data from a variety of information resources and tools and services to question this integrated data to support pharmacological research. The project is based upon the assimilation of data already stored as triples, in the form subject-predicate-object. The software and data are available for download and local installation, under an open source and open access model. Tools and services are provided to query and visualize this data, and a sustainability plan will be in place, continuing the operation of the Open PHACTS Discovery Platform after the project funding ends. Throughout the project, a series of recommendations will be developed in conjunction with the community, building on open standards, to ensure wide applicability of the approaches used for integration of data. drug, enzyme family, structure, receptor, target, ki, pathway, pharmacology, enzyme, small molecule, data mining, annotation, drug discovery, drug development, pharmacological profile, pharmacokinetic, admet data, biological target, chemical, linked data, rdf, nanopublication, platform, semantic technology, text mining, bioinformatics, cheminformatics, interoperability, chemistry, data provenance, compound, small molecule, semantic integration, drug discovery uses: CHEBI
uses: ChemSpider
uses: ConceptWiki
uses: DrugBank
uses: ENZYME
uses: UniProt
uses: Gene Ontology
uses: WikiPathways
is listed by: Consortia-pedia
is listed by: FORCE11
is related to: Nanopub.org
is related to: eTRIKS
is related to: Janssen Research and Development
is related to: Almirall
is related to: ESTEVE
is related to: Merck
is related to: Pfizer Animal Genetics
is related to: VU University; Amsterdam; Netherlands
is related to: European Bioinformatics Institute
is related to: Maastricht University; Maastricht; Netherlands
is related to: University of Bonn; Bonn; Germany
is related to: Royal Society of Chemistry
is related to: Spanish National Cancer Research Center
is related to: Netherlands Bioinformatics Centre
is related to: SIB Swiss Institute of Bioinformatics
is related to: Technical University of Denmark; Lyngby; Denmark
is related to: University of Santiago de Compostela; Santiago de Compostela; Spain
is related to: University of Vienna; Vienna; Austria
is related to: University of Hamburg; Hamburg; Germany
is related to: University of Manchester; Manchester; United Kingdom
is related to: BioSolveIT
is related to: ConnectedDiscovery
is related to: OpenLink Software
is related to: SciBite
is related to: Open PHACTS Foundation
has parent organization: University of Vienna; Vienna; Austria
Innovative Medicines Initiative grant 115191;
EFPIA ;
Open PHACTS Foundation
PMID:22683805 Open unspecified license, Registration required, Non-commercial r3d100011550, nlx_144033 https://www.force11.org/node/4684, http://www.imi.europa.eu/content/open-phacts, https://doi.org/10.17616/R3T63F SCR_005050 SciCrunch Registry Open PHACTS - Open Pharmacological Space, OpenPhacts.org, Open Pharmacological Space, Open Pharmacological Concepts Triple Store, OpenPHACTS, Open PHACTS: Open Pharmacological Space 2026-10-31 12:13:56 11
UC Davis Center for Childrens Environmental Health
 
Resource Report
Resource Website
UC Davis Center for Childrens Environmental Health (RRID:SCR_004998) CCEH data or information resource, disease-related portal, portal, topical portal The Center for Children''s Environmental Health and Disease Prevention is a multi-disciplinary collaborative research organization established to examine how toxic chemicals may influence the development of autism in children. The Center''s goal is to contribute knowledge about autism that will lead to new strategies for the prevention and treatment of this mysterious condition. Parents and health professionals have raised concerns about how environmental factors such as pesticides, a variety of chemicals, or even some ingredients included in vaccines may effect the development of the disorder. We are the first center to examine the roles of a wide range of toxic chemicals, genetic predisposition, and the interplay between these two in altering brain development during early life and leading to abnormal social behavior in children. Scientists in the CCEH study the effects of the environment on children''s health, with a particular focus on autism. Researchers come from all fields including molecular biology, medicine, nutrition, psychology, animal behavior, and genetics. The Center''s research is guided by an Advisory Board with representatives including parents, activists, non-profits, government agencies, and concerned citizens. This Center is one of several children''s centers throughout the nation funded by the U.S. EPA and NIEHS. autism, environmental health has parent organization: UC Davis School of Veterinary Medicine; California; USA EPA ;
University of California at Davis; California; USA ;
UC Davis School of Veterinary Medicine; California; USA ;
UC Davis School of Medicine; California; USA
nif-0000-02124 SCR_004998 SciCrunch Registry UC Davis School of Vet Med: Center for Children''s Environmental Health, Center for Children''s Environmental Health and Disease Prevention, Center for Children''s Environmental Health 2026-10-31 12:14:08 0
BBMRI Wiki
 
Resource Report
Resource Website
BBMRI Wiki (RRID:SCR_004994) BBMRI Wiki controlled vocabulary, data or information resource, international standard specification, narrative resource, ontology, standard specification, wiki The BBMRI Wiki is intended to help establish a standard vocabulary within the European BBMRI (Biobanking and Biomolecular Resources Research Infrastructure) project. This Wiki also facilitates the definition and updating of new terms as well as the Minimum Information About BIobank data Sharing: MIABIS. MIABIS represents the minimum information required to enable the exchange of biological samples and data between biobanks. biobank, biomedical, lexicon, miabis, sample, study has parent organization: Biobanking and Biomolecular Resources Research Infrastructure (BBMRI) nlx_143999 SCR_004994 SciCrunch Registry BBMRI Wiki: For a global biomedical research, Biobanking Biomolecular Resources Research Infrastructure Wiki, Biobanking and Biomolecular Resources Research Infrastructure Wiki 2026-10-31 12:14:08 0
NCBI Popset
 
Resource Report
Resource Website
1+ mentions
NCBI Popset (RRID:SCR_005049) PopSet data or information resource, data repository, database, service resource, storage service resource Database containing a set of DNA sequences that have been collected to analyse the evolutionary relatedness of a population. The population could originate from different members of the same species, or from organisms from different species. Users may submit a Popset using Sequin. nucleotide sequence, nucleotide, sequence, dna sequence, dna, evolution, population, genomics, eukaryotic cell, mutation, phylogenetic, ecosystem, gold standard is listed by: re3data.org
has parent organization: NCBI
nlx_99613, r3d100010777 http://www.ncbi.nlm.nih.gov/sites/entrez?db=popset, https://doi.org/10.17616/R3S901 SCR_005049 SciCrunch Registry Entrez PopSet 2026-10-31 12:14:02 9
M-pick
 
Resource Report
Resource Website
M-pick (RRID:SCR_004995) M-pick software resource A modularity-based clustering software for Operational Taxonomic Unit (OTU) picking of 16S rRNA sequences. The algorithm does not require a predetermined cut-off level, and our simulation studies suggest that it is superior to existing methods that require specified distance or variance levels to define OTUs. 16s rrna sequence, 16s rrna, rrna, sequence, binning is listed by: OMICtools
has parent organization: University of Florida; Florida; USA
OMICS_01447 SCR_004995 SciCrunch Registry M-pick: a modularity-based clustering method for OTU picking 2026-10-31 12:14:01 0
University of Manchester; Manchester; United Kingdom
 
Resource Report
Resource Website
10+ mentions
University of Manchester; Manchester; United Kingdom (RRID:SCR_004996) university Public research university in Manchester, England, formed in 2004 by merger of University of Manchester Institute of Science and Technology and Victoria University of Manchester. Second largest university in United Kingdom by enrollment. is affiliated with: OpenMinTeD
is related to: NEWMEDS
is related to: ORBITO
is related to: Open PHACTS
is related to: EMIF
is parent organization of: Smart Dictionary Lookup
is parent organization of: mlgt
is parent organization of: Utopia Docs
is parent organization of: Kidney and Urinary Pathway Knowledge Base
is parent organization of: PUMA
is parent organization of: DOSY Toolbox
is parent organization of: RightField
is parent organization of: SEEK
is parent organization of: miRBase
is parent organization of: PRINTS
is parent organization of: CHEM21
is parent organization of: Taverna
is parent organization of: SysMO-DB
is parent organization of: MethodBox
is parent organization of: OWL API
is parent organization of: X:MAP
is parent organization of: Mimas
is parent organization of: National Centre for Text Mining
is parent organization of: Chemistry Using Text Annotations
is parent organization of: TerMine
is parent organization of: Acromine Disambiguator
is parent organization of: Census Dissemination Unit
is parent organization of: Open Regulatory Annotation Database
is parent organization of: ADAPT: A Database of Affymetrix Probesets and Transcripts
is parent organization of: brat rapid annotation tool
is parent organization of: UK DNA Banking Network
is parent organization of: AcroMine
is parent organization of: BioIE: Extracting Informative Sentences From the Biomedical Literature
is parent organization of: Biocatalogue - The Life Science Web Services Registry
is parent organization of: myExperiment
is parent organization of: Software Ontology
is parent organization of: bioNerDS
is parent organization of: MorphoJ
is parent organization of: University of Manchester Bioinformatics Core Facility
is parent organization of: miRBase
is parent organization of: Simple Assignment of Spots to Surfaces
is parent organization of: AMBER parameter database
is parent organization of: University of Manchester Electron Microscopy Core Facility
is parent organization of: University of Manchester Mass Spectrometry and Separations Core Facility
is parent organization of: University of Manchester Advanced Manufacturing Platform Core Facility
is parent organization of: University of Manchester Surface Characterisation Core Facility
is parent organization of: University of Manchester Biochemical and Biophysical Sciences Technology Platform Core Facility
is parent organization of: University of Manchester Corrosion and Materials for Demanding Environments Core Facility
is parent organization of: University of Manchester Magnetic Resonance and Related Technology Platform Core Facility
is parent organization of: University of Manchester X-ray Diffraction Platform Core Facility
is parent organization of: University of Manchester Services and Equipment Core Facility
is parent organization of: University of Manchester Design, Fabrication and Testing Core Facility
is parent organization of: University of Manchester National X-ray Computed Tomography Core Facility
is parent organization of: University of Manchester Advanced Metal Development Core Facility
is parent organization of: University of Manchester BioAutomation and Biofoundry Core Facility
is parent organization of: University of Manchester Biomolecular NMR Core Facility
has organization facet: MANC-RISK-SCREEN
nlx_74265, Wikidata:Q230899, grid.5379.8, ISNI:121662407, Crossref funder ID:501100000770 https://ror.org/027m9bs27 SCR_004996 SciCrunch Registry University of Manchester 2026-10-31 12:13:54 10
Bio X Cell
 
Resource Report
Resource Website
1000+ mentions
Bio X Cell (RRID:SCR_004997) commercial organization Commercial supplier and developer of in vivo antibodies. Provides antibodies and antibody production services. commercial, antibody, reagent, biomedical, research, new hampshire, SCR_019248, nlx_152318 SCR_004997 SciCrunch Registry 2026-10-31 12:14:03 4386
ESPRIT-Tree
 
Resource Report
Resource Website
1+ mentions
ESPRIT-Tree (RRID:SCR_005045) ESPRIT-Tree software resource Software for hierarchical Clustering Analysis of Millions of 16S rRNA Pyrosequences in Quasi-linear Time. clustering, 16s rrna, pyrosequence is listed by: OMICtools
has parent organization: University of Florida; Florida; USA
PMID:21596775 OMICS_01445 SCR_005045 SciCrunch Registry ESPRIT-Tree: Hierarchical Clustering Analysis of Millions of 16S rRNA Pyrosequences in Quasi-linear Time 2026-10-31 12:14:04 9
Huazhong University of Science and Technology; Wuhan; China
 
Resource Report
Resource Website
1+ mentions
Huazhong University of Science and Technology; Wuhan; China (RRID:SCR_005047) HUST university Public research university located in Guanshan Subdistrict, Hongshan District, Wuhan, Hubei province, China. is parent organization of: AnimalTFDB
is parent organization of: Midbody, Centrosome and Kinetochore
is parent organization of: EPSD Eukaryotic Phosphorylation Site Database
ISNI:0000 0004 0368 7223, grid.33199.31, Wikidata:Q1711196, nlx_144495, Crossref funder ID:501100003397 https://ror.org/00p991c53 SCR_005047 SciCrunch Registry Huazhong University of Science and Technology, Huazhong University of Science & Technology, Huazhong University of Science & Technology; Hubei; China 2026-10-31 12:14:08 5
Ivy Glioblastoma Atlas Project
 
Resource Report
Resource Website
100+ mentions
Ivy Glioblastoma Atlas Project (RRID:SCR_005044) Ivy GAP atlas, data or information resource, database, image collection Platform for exploring the anatomic and genetic basis of glioblastoma at the cellular and molecular levels that includes two interactive databases linked together by de-identified tumor specimen numbers to facilitate comparisons across data modalities: * The open public image database, here, providing in situ hybridization data mapping gene expression across the anatomic structures inherent in glioblastoma, as well as associated histological data suitable for neuropathological examination * A companion database (Ivy GAP Clinical and Genomic Database) offering detailed clinical, genomic, and expression array data sets that are designed to elucidate the pathways involved in glioblastoma development and progression. This database requires registration for access. The hope is that researchers all over the world will mine these data and identify trends, correlations, and interesting leads for further studies with significant translational and clinical outcomes. The Ivy Glioblastoma Atlas Project is a collaborative partnership between the Ben and Catherine Ivy Foundation, the Allen Institute for Brain Science and the Ben and Catherine Ivy Center for Advanced Brain Tumor Treatment. glioblastoma, in situ hybridization, hematoxylin and eosin stain, brain, tumor, gene expression, anatomic structure, histology, clinical, genomic, expression array, gene, FASEB list has parent organization: Allen Institute for Brain Science Brain cancer, Cancer Ben and Catherine Ivy Foundation nlx_99161 SCR_005044 SciCrunch Registry 2026-10-31 12:13:56 158
Percolator: Semi-supervised learning for peptide identification from shotgun proteomics datasets
 
Resource Report
Resource Website
1000+ mentions
Percolator: Semi-supervised learning for peptide identification from shotgun proteomics datasets (RRID:SCR_005040) data or information resource, database, software resource Percolator post-processes the results of a shotgun proteomics database search program, re-ranking peptide-spectrum matches so that the top of the list is enriched for correct matches. Shotgun proteomics uses liquid chromatography-tandem mass spectrometry to identify proteins in complex biological samples. We describe an algorithm, called Percolator, for improving the rate of peptide identifications from a collection of tandem mass spectra. Percolator uses semi-supervised machine learning to discriminate between correct and decoy spectrum identifications, correctly assigning peptides to 17% more spectra from a tryptic dataset and up to 77% more spectra from non-tryptic digests, relative to a fully supervised approach. The yeast-01 data is available in tab delimetered format. The SEQUEST parameter file and target database for the yeast and worm data are also available. worm, yeast, bio.tools is listed by: Debian
is listed by: bio.tools
has parent organization: University of Washington; Seattle; USA
PMID:17952086 biotools:percolator, nlx_98814 https://bio.tools/percolator SCR_005040 SciCrunch Registry Percolator 2026-10-31 12:14:08 2729
Brain Research Institute
 
Resource Report
Resource Website
Brain Research Institute (RRID:SCR_004988) BRI data or information resource, graduate program resource, portal, postdoctoral program resource, topical portal, training resource Portal touching on all aspects of neuroscience from molecules to the mind, from the laboratory bench to the patient's bedside. Members study the normal structure and workings of the nervous system, its development, its cognitive functions, its derangement by disease and injury, and the means of its repair and protection. Projects span traditional disciplinary boundaries, as do graduate and postdoctoral training programs. Its major achievement has been to foster and improve multidisciplinary collaborations which has increasingly permitted the identification of pathogenic mechanisms and the formulation of new therapeutic approaches. one mind tbi, one mind ptsd, neuroscience, nervous system, genomics, proteomics, magnetic resonance imaging assay, positron emission tomography, biosensor, microelectromechanical system, brain, spinal cord has parent organization: University of California at Los Angeles; California; USA
is parent organization of: Numerical Fibre Generator
is parent organization of: cortex
is parent organization of: SOCK
is parent organization of: Brain Research Institute Biobank Resources
Brain disorder, Parkinson's disease, Huntington's disease, Alzheimer's disease, Neurofibromatosis, Stroke, Spinal cord injury, Traumatic brain injury, Post-Traumatic Stress Disorder nlx_143995 http://www.bri.ucla.edu/index_02.asp SCR_004988 SciCrunch Registry Brain Research Institute UCLA 2026-10-31 12:13:54 0
Florida Alzheimer's Disease Research Center
 
Resource Report
Resource Website
Florida Alzheimer's Disease Research Center (RRID:SCR_004940) FADRC data or information resource, disease-related portal, portal, topical portal A statewide consortium dedicated to Alzheimer's disease research to better understand the disease and related memory disorders. It includes Alzheimer's researchers and clinicians from institutions across Florida such as USF Health, Mayo Clinic Jacksonville, and Mount Sinai Medical Center. The purpose of the ADRC is to assist institutions in developing an infrastructure (cores) that can be used for various research projects with the goal of better understanding Alzheimer's disease and related disorders. The Florida ADRC is comprised of six cores, three projects and three pilot projects among other collaborations that utilize these cores. disease related portal, alzheimer's disease, memory disorder, dementia, clinical, late adult human is related to: Alzheimers Disease Genetics Consortium
has parent organization: University of South Florida; Florida; USA
is parent organization of: Mayo Clinic Jacksonville: Neuropathology and Microscopy
Alzheimer's disease, Memory disorder, Dementia, Mild cognitive impairment NIA RFA-AG-04-011 Contact the core ADRC Administrator to use Florida ADRC cores nlx_143954 SCR_004940 SciCrunch Registry Florida ADRC, Florida Alzheimer's Disease Research Center 2026-10-31 12:13:53 0
MBCluster.Seq
 
Resource Report
Resource Website
1+ mentions
MBCluster.Seq (RRID:SCR_005079) MBCluster.Seq software resource Software to cluster genes based on Poisson or Negative-Binomial model for RNA-Seq or other digital gene expression (DGE) data. bio.tools is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
PMID:24191069 GNU General Public License, >/=v3 OMICS_01417, biotools:mbcluster.seq https://bio.tools/mbcluster.seq SCR_005079 SciCrunch Registry MBCluster.Seq: Model-Based Clustering for RNA-seq Data 2026-10-31 12:13:56 1
University of Kansas; Kansas; USA
 
Resource Report
Resource Website
1+ mentions
University of Kansas; Kansas; USA (RRID:SCR_005075) KU university Public research university with its main campus in Lawrence, Kansas, and several satellite campuses, research and educational centers, medical centers, and classes across the state of Kansas. is parent organization of: HistoWeb: Nervous System
is parent organization of: Images from the Clendening Library
is parent organization of: Dockground: Benchmarks, Docoys, Templates, and other knowledge resources for DOCKING
is parent organization of: DB-PABP: a database of polyanion binding proteins
is parent organization of: Autism Genetic Database
is parent organization of: University of Kansas Labs and Facilities
is parent organization of: University of Kansas Protein Production Group Core Facility
is parent organization of: University of Kansas Nuclear Magnetic Resonance Laboratory Core Facility
is parent organization of: University of Kansas Molecular Graphics and Modeling Laboratory Core Facility
is parent organization of: University of Kansas Medical Center; Kansas; USA
is parent organization of: University of Kansas Lawrence Protein Structure and X-ray Crystallography Laboratory Core Facility
is parent organization of: University of Kansas Microscopy and Analytical Imaging Research Resource Core Facility
is parent organization of: University of Kansas Mass Spectrometry and Analytical Proteomics Core Facility
is parent organization of: I-TASSER
is parent organization of: University of Kansas Nanofabrication Core Facility
is parent organization of: University of Kansas Flow Cytometry Core Facility
is parent organization of: University of Kansas KU Genome Sequencing Core Facility
ISNI:0000 0001 2106 0692, Wikidata:Q52413, nlx_83015, Crossref funder ID:100007859, grid.266515.3 https://ror.org/001tmjg57 SCR_005075 SciCrunch Registry University of Kansas 2026-10-31 12:14:05 1
AGORA
 
Resource Report
Resource Website
100+ mentions
AGORA (RRID:SCR_005070) AGORA software resource An algorithm to use optical map information directly within the de Bruijn graph framework to help produce an accurate assembly of a genome that is consistent with the optical map information provided. AGORA takes as input two data structures: OpMap ? an ordered list of fragment sizes representing the optical map; and Edges ? a list of de Bruijn graph edges with their corresponding sequences. genome assembly, genome, reconstruction is listed by: OMICtools PMID:22856673 OMICS_00039 SCR_005070 SciCrunch Registry Assembly Guided by Optical Restriction Alignment 2026-10-31 12:14:04 105
GRASS
 
Resource Report
Resource Website
50+ mentions
GRASS (RRID:SCR_005071) GRASS software resource A generic algorithm for scaffolding next-generation sequencing assemblies. next-generation sequencing, scaffolding, bio.tools is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
PMID:22492642 GNU General Public License, v3 biotools:GRASS, OMICS_00043 https://bio.tools/GRASS SCR_005071 SciCrunch Registry GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies, GeneRic ASembly Scaffolder 2026-10-31 12:14:08 89
Protocol Online - Your labs reference book
 
Resource Report
Resource Website
10+ mentions
Protocol Online - Your labs reference book (RRID:SCR_004937) Protocol Online data or information resource, experimental protocol, narrative resource Database of research protocols in a variety of life science fields, it contains protocols contributed by worldwide researchers as well as links to web protocols hosted by worldwide research labs, biotech companies, personal web sites. The data is stored in a MySql relational database. Protocol Online also hosts discipline specific discussion forums (BioForum), and provides a free PubMed search and alerting service (PubAlert). bioinformatics, molecular biology, immunology, microbiology, proteomics, cell biology, database is used by: NIF Data Federation
is used by: Integrated Blogs
Eppendorf ;
Invitrogen ;
Chang Bioscience ;
Mirus ;
KPL ;
Oligomaster ;
Abcam ;
Nature Publishing Group
nlx_90492 SCR_004937 SciCrunch Registry Protocol Online Your lab''s reference book, Protocol-Online 2026-10-31 12:14:06 11
MapAl
 
Resource Report
Resource Website
1+ mentions
MapAl (RRID:SCR_004938) MapAl software resource A software tool for RNA-Seq expression profiling that builds on the established programs Bowtie and Cufflinks. Allowing an incorporation of ''gene models'' already at the alignment stage almost doubles the number of transcripts that can be measured reliably. rna?seq is listed by: OMICtools
has parent organization: BOKU University; Vienna; Austria
PMID:22485116 GNU General Public License OMICS_01261 SCR_004938 SciCrunch Registry 2026-10-31 12:13:59 1

Can't find your Tool?

We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.

Can't find the RRID you're searching for? X
X
  1. PRECISE-TBI Resources

    Welcome to the PRECISE-TBI Resources search. From here you can search through a compilation of resources used by PRECISE-TBI and see how data is organized within our community.

  2. Navigation

    You are currently on the Community Resources tab looking through categories and sources that PRECISE-TBI has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.

  3. Logging in and Registering

    If you have an account on PRECISE-TBI then you can log in from here to get additional features in PRECISE-TBI such as Collections, Saved Searches, and managing Resources.

  4. Searching

    Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:

    1. Use quotes around phrases you want to match exactly
    2. You can manually AND and OR terms to change how we search between words
    3. You can add "-" to terms to make sure no results return with that term in them (ex. Cerebellum -CA1)
    4. You can add "+" to terms to require they be in the data
    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Collections

    If you are logged into PRECISE-TBI you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  6. Facets

    Here are the facets that you can filter the data by.

  7. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.