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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Longitudinal Employer-Household Dynamics
 
Resource Report
Resource Website
Longitudinal Employer-Household Dynamics (RRID:SCR_000817) LEHD data or information resource, data set A dataset that combines federal and state administrative data on employers and employees with core Census Bureau censuses and surveys, while protecting the confidentiality of people and firms that provide the data. This data infrastructure facilitates longitudinal research applications in both the household / individual and firm / establishment dimensions. The specific research is targeted at filling an important gap in the available data on older workers by providing information on the demand side of the labor market. These datasets comprise Title 13 protected data from the Current Population Surveys, Surveys of Income and Program Participation, Surveys of Program Dynamics, American Community Surveys, the Business Register, and Economic Censuses and Surveys. With few exceptions, states have partnered with the Census Bureau to share data. As of December 2008, Connecticut, Massachusetts, New Hampshire and Puerto Rico have not signed a partnership agreement, while a partnership with the Virgin Islands is pending. LEHD's second method of developing employer-employee data relations through the use of federal tax data has been completed. LEHD has produced summary tables on accessions, separation, job creation, destruction and earnings by age and sex of worker by industry and geographic area. The data files consist of longitudinal datasets on all firms in each participating state (quarterly data, 1991- 2003), with information on age, sex, turnover, and skill level of the workforce as well as standard information on employment, payroll, sales and location. These data can be accessed for all available states from the Project Website. Data Availability: Research conducted on the LEHD data and other products developed under this proposal at the Census Bureau takes place under a set of rules and limitations that are considerably more constraining than those prevailing in typical research environments. If state data are requested, the successful peer-reviewed proposals must also be approved by the participating state. If federal tax data are requested, the successful peer-reviewed proposals must also be approved by the Internal Revenue Service. Researchers using the LEHD data will be required to obtain Special Sworn Status from the Census Bureau and be subject to the same legal penalties as regular Census Bureau employees for disclosure of confidential information. Basic instructions on how to download the data files and restrictions can be found on the Project Website. * Dates of Study: 1991-present * Study Features: Longitudinal * Sample Size: 48 States or U.S. territories longitudinal, late adult human, employee, employer, household, employment, survey, census has parent organization: U.S. Census Bureau Aging, All NIA THIS RESOURCE IS NO LONGER IN SERVICE nlx_151841 SCR_000817 Longitudinal Employer-Household Dynamics (LEHD) 2026-07-27 09:31:03 0
Advanced Cognitive Training for Independent and Vital Elderly (ACTIVE)
 
Resource Report
Resource Website
Advanced Cognitive Training for Independent and Vital Elderly (ACTIVE) (RRID:SCR_000813) ACTIVE data or information resource, data set Data set from a randomized controlled trial of cognitive interventions designed to maintain functional independence in elders by improving basic mental abilities. Several features made ACTIVE unique in the field of cognitive interventions: (a) use of a multi-site, randomized, controlled, single-blind design; (b) intervention on a large, diverse sample; (c) use of common multi-site intervention protocols, (d) primary outcomes focused on long-term, cognitively demanding functioning as measured by performance-based tests of daily activities; and (e) an intent-to-treat analytical approach. The clinical trial ended with the second annual post-test in January 2002. A third annual post-test was completed in December 2003. The area population and recruitment strategies at the six field sites provided a study sample varying in racial, ethnic, gender, socioeconomic, and cognitive characteristics. At baseline, data were collected by telephone for eligibility screening, followed by three in-person assessment sessions, including two individual sessions and one group session, and a self-administered questionnaire. At post-tests, data were collected in-person in one individual session and one group session as well as by self-administered questionnaire. There were four major categories of measures: proximal outcomes (measures of cognitive abilities that were direct targets of training), primary outcomes (measures of everyday functioning, both self-report and performance), secondary outcomes (measures of health, mobility, quality of life, and service utilization), and covariates (chronic disease, physical characteristics, depressive symptoms, cognitive impairment, psychosocial variables, and demographics). Phase I of ACTIVE was a randomized controlled, single-blind trial utilizing a four-group design, including three treatment arms and a no-contact control group. Each treatment arm consisted of a 10-session intervention for one of three cognitive abilities memory, reasoning, and speed of processing. Testers were blind to participant treatment assignment. The design allowed for testing of both social contact effects (via the contact control group) and retest effects (via the no-contact control group) on outcomes. Booster training was provided in each treatment arm to a 60% random subsample prior to first annual post-test. Phase II of ACTIVE started in July, 2003 as a follow-up study focused on measuring the long-term impact of training effects on cognitive function and cognitively demanding everyday activities. The follow-up consisted of one assessment to include the Phase I post-test battery. This was completed in late 2004. cognitive function, cognition, longitudinal, mental ability, reasoning, memory, speed of processing is listed by: Inter-university Consortium for Political and Social Research (ICPSR)
is listed by: National Archive of Computerized Data on Aging (NACDA)
has parent organization: University of Alabama at Birmingham; Alabama; USA
Late adult human, Aging NIA AG014289;
NIA AG023078
Public: Phase I data are available through ICPSR nlx_149439 SCR_000813 ACTIVE Study, Advanced Cognitive Training for Independent and Vital Elderly 2026-07-27 09:31:03 0
NINDS Disorder Index
 
Resource Report
Resource Website
NINDS Disorder Index (RRID:SCR_000433) NINDS Disorder Index, NINDS Disorder List data or information resource, data set Reference disease data set of neurological diseases along with their definitions, etiology, treatment, prognosis, ongoing research, clinical trials information and publications. The Disorder Index includes synonyms and research topics. Navigation is by letter of the alphabet., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. genetic disorder, disease, disease progression, disorder, neurological disease, bibliography, clinical is used by: NIF Data Federation
is related to: Integrated Disease
has parent organization: National Institute of Neurological Disorders and Stroke
THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-23200 SCR_000433 NINDS Disease List, Disorder Index: National Institute of Neurological Disorders and Stroke (NINDS), Disorders index from the National Institute of Neurological Disorders and Stroke (NINDS), NINDS Disorders A - Z, National Institute of Neurological Disorders and Stroke Disorder Index 2026-07-27 09:30:57 0
Morphometry BIRN
 
Resource Report
Resource Website
Morphometry BIRN (RRID:SCR_000155) MBIRN data or information resource, data set THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 4th,2023. Calibration data set of spoiled gradient-recalled echo magnetic resonance imaging data from five healthy volunteers (four males and one female) scanned twice at four sites having 1.5T systems from different vendors (Siemens, GE, Marconi Medical Systems) pooled by the Morphometry Testbed's (MBIRN). Some subjects were also scanned a single time at another site. One subject was only scanned twice at three sites (subject 73213384) and once at another site. For each subject, four Fast Low-Angle Shot (FLASH) scans with flip angles of 3, 5, 20, and 30 degrees were obtained in a single scan session, from which tissue proton density and T1 maps can be derived. These data were acquired to investigate various metrics of within-site and across-site reproducibility. The images have been defaced so that no facial features can be reconstructed from these data. The Morphometry Testbed (MBIRN) of the Biomedical Informatics Research Network (BIRN) focused on pooling and analyzing of neuroimaging data acquired at multiple sites. Specific applications include potential relationships between anatomical differences and specific memory dysfunctions, such as Alzheimer's disease. With the completion of the initial BIRN testbed phase, each of the original BIRN testbeds have now been retired in order to focus on new users in other biomedical domains. morphometry, mri, neuroinformatics, subcortical, dicom, magnetic resonance, nifti, quantification, segmentation, visualization, workflow, image collection, structural mri, male, female, neuroimaging is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is listed by: Biositemaps
is related to: XNAT Central
has parent organization: Biomedical Informatics Research Network
is parent organization of: Gradient Non-linearity Distortion Correction
is parent organization of: Gradient Non-linearity Distortion Correction
THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-00069 http://www.nitrc.org/projects/mbirn SCR_000155 Morphometry BIRN Multi-site Multi-session Structural MRI Data, Brain Morphometry Testbed, Morphometry Testbed, mBIRN_calib, mbirn calibration 2026-07-27 09:30:53 0
MINC Example files
 
Resource Report
Resource Website
MINC Example files (RRID:SCR_000859) MINC Example files data or information resource, data set A reference MINC set of files that currently includes human head images only of standard modalities. The goal is to build a well curated collection of files that demonstrate the capabilities of MINC image collection is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: MINC
has parent organization: McConnell Brain Imaging Center
Free, Available for download, Freely available nlx_155660 SCR_000859 2026-07-27 09:31:03 0
Cancer Imaging Phenomics Toolkit
 
Resource Report
Resource Website
1+ mentions
Cancer Imaging Phenomics Toolkit (RRID:SCR_017323) CaPTk software application, image analysis software, software resource, data processing software Software platform for analysis of radiographic cancer images. Used as quantitative imaging analytics for precision diagnostics and predictive modeling of clinical outcome. analysis, radiographic, cancer, image, quantitative, analytics is related to: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA Cancer NCI U24 CA189523 PMID:29340286 Free, Available for download, Freely available https://github.com/CBICA/CaPTk/ SCR_017323 Cancer Imaging Phenomics Toolkit 2026-07-27 09:35:28 7
Body Mass Index Calculator
 
Resource Report
Resource Website
Body Mass Index Calculator (RRID:SCR_000122) BMI Calculator analysis service resource, service resource, data analysis service, production service resource Body Mass Index (BMI) for adults can be calculated using only height and weight. Body mass index (BMI) is a measure of body fat based on height and weight that applies to adult men and women. adult human, body mass, male, female is listed by: NIDDK Information Network (dkNET)
is listed by: Genetic Analysis Software
has parent organization: National Heart Lung and Blood Institute
NHLBI Free, Public nlx_152731 SCR_000122 Calculate Your Body Mass Index 2026-07-27 09:30:52 0
HOMOZYGOSITYMAPPER
 
Resource Report
Resource Website
100+ mentions
HOMOZYGOSITYMAPPER (RRID:SCR_001714) HomozygosityMapper analysis service resource, service resource, data analysis service, production service resource A web-based approach of homozygosity mapping that can handle tens of thousands markers. User can upload their own SNP genotype files to the database. Intuitive graphic interface is provided to view the homozygous stretches, with the ability of zooming into single chromosomes or user-defined chromosome regions. The underlying genotypes in all samples are displayed. The software is also integrated with our candidate gene search engine, GeneDistiller, so that users can interactively determine the most promising gene. (entry from Genetic Analysis Software) gene, genetic, genomic, perl, genotype, homozygosity score, homozygosity, bio.tools, FASEB list is listed by: OMICtools
is listed by: Genetic Analysis Software
is listed by: bio.tools
is listed by: Debian
has parent organization: Charite - Universitatsmedizin Berlin; Berlin; Germany
PMID:19465395 Free, Freely Available nlx_154069, biotools:homozygositymapper, OMICS_00123 https://bio.tools/homozygositymapper SCR_001714 2026-07-27 09:31:17 121
Phevor
 
Resource Report
Resource Website
1+ mentions
Phevor (RRID:SCR_002273) Phevor analysis service resource, service resource, data analysis service, production service resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 28,2025. Tool that integrates phenotype, gene function, and disease information with personal genomic data for improved power to identify disease-causing alleles. It works by combining knowledge resident in multiple biomedical ontologies with the outputs of variant prioritization tools. It does so using an algorithm that propagates information across and between ontologies. This process enables Phevor to accurately reprioritize potentially damaging alleles identified by variant prioritization tools in light of gene function, disease, and phenotype knowledge. Phevor is especially useful for single exome and family trio-based diagnostic analyses, the most commonly occurring clinical scenarios, and ones for which existing personal-genomes diagnostic tools are most inaccurate and underpowered. Phevor not only improves diagnostic accuracy for individuals presenting with established disease phenotypes, but also for those with previously undescribed and atypical disease presentations. Importantly, Phevor is not limited to known diseases, or known disease-causing alleles. genome interpretation, variant prioritization, disease gene prioritization, phenotype, gene function, disease, genomic, disease-causing allele, gene, function, allele has parent organization: University of Utah School of Medicine; Utah; USA PMID:24702956 THIS RESOURCE IS NO LONGER IN SERVICE SciRes_000139 SCR_002273 Phenotype Driven Variant Ontological Re-Ranking Tool 2026-07-27 09:31:26 9
MADELINE
 
Resource Report
Resource Website
1+ mentions
MADELINE (RRID:SCR_001979) MADELINE software application, service resource, software resource Software tool designed for preparing, visualizing, and exploring human pedigree data used in genetic linkage studies. It converts pedigree and marker data into formats required by popular linkage analysis packages, provides powerful ways to query pedigree data sets, and produces Postscript pedigree drawings that are useful for rapid data review. gene, genetic, genomic, c, unix, solaris, freebsd, openbsd, macos, ms-windows, cygwin, linux, pedigree, draw, linkage association, family association is listed by: OMICtools
is listed by: Genetic Analysis Software
has parent organization: University of Michigan; Ann Arbor; USA
PMID:17488757 THIS RESOURCE IS NO LONGER IN SERVICE nlx_154446, OMICS_00210 http://eyegene.ophthy.med.umich.edu/#madeline SCR_001979 Madeline 2026-07-27 09:31:21 5
WegoLoc
 
Resource Report
Resource Website
1+ mentions
WegoLoc (RRID:SCR_001402) WegoLoc analysis service resource, service resource, data analysis service, production service resource Data analysis service that predicts protein subcellular localizations of animal, fungal, plant, and human proteins based on sequence similarity and gene ontology information. subcellular localization, protein is listed by: OMICtools
is related to: Gene Ontology
THIS RESOURCE IS NO LONGER IN SERVICE OMICS_01636 SCR_001402 weighted gene ontology term based subcellular locallization prediction 2026-07-27 09:31:11 4
Distant Regulatory Elements
 
Resource Report
Resource Website
10+ mentions
Distant Regulatory Elements (RRID:SCR_003058) DiRE analysis service resource, service resource, data analysis service, production service resource Web server based on the Enhancer Identification (EI) method, to determine the chromosomal location and functional characteristics of distant regulatory elements (REs) in higher eukaryotic genomes. The server uses gene co-expression data, comparative genomics, and combinatorics of transcription factor binding sites (TFBSs) to find TFBS-association signatures that can be used for discriminating specific regulatory functions. DiRE's unique feature is the detection of REs outside of proximal promoter regions, as it takes advantage of the full gene locus to conduct the search. DiRE can predict common REs for any set of input genes for which the user has prior knowledge of co-expression, co-function, or other biologically meaningful grouping. The server predicts function-specific REs consisting of clusters of specifically-associated TFBSs, and it also scores the association of individual TFs with the biological function shared by the group of input genes. Its integration with the Array2BIO server allows users to start their analysis with raw microarray expression data. regulatory element, enhancer identification, genome, prediction, transcription factor binding site, gene, co-expression, co-function, function, transcription factor, comparative genomics, regulatory function, gene locus, chromosome, bio.tools is listed by: bio.tools
is listed by: Debian
has parent organization: NCBI
NLM ;
Intramural Research Program
PMID:18487623 Free, Freely available nif-0000-30448, biotools:dire https://bio.tools/dire SCR_003058 Distant Regulatory Elements of co-regulated genes 2026-07-27 09:31:39 25
Human Gene Connectome Server
 
Resource Report
Resource Website
1+ mentions
Human Gene Connectome Server (RRID:SCR_002627) HGCS analysis service resource, service resource, data analysis service, production service resource An interactive web server that enables researchers to prioritize any list of genes by their biological proximity to defined core genes (i.e. genes that are known to be associated with the phenotype), and to predict novel gene pathways. gene, disease, phenotype, genome, connectome, bio.tools is listed by: bio.tools
is listed by: Debian
has parent organization: Human Gene Connectome
PMID:23509278 Free nlx_156049, biotools:hgcs https://bio.tools/hgcs SCR_002627 2026-07-27 09:31:36 5
DepressionTools.org Clinical Significance Calculator
 
Resource Report
Resource Website
DepressionTools.org Clinical Significance Calculator (RRID:SCR_003873) DepressionTools.org analysis service resource, service resource, data analysis service, production service resource Online instrument that estimates whether a biomarker predicting outcome of depression treatment is likely to be clinically significant. biomarker, clinical significance, treatment, clinical, outcome, software as a service, binary, genetic, continuous, effect size uses: Hamilton Rating Scale for Depression
has parent organization: NEWMEDS
Depressive Disorder PMID:22256872 nlx_158198 SCR_003873 Clinical Significance Calculator 2026-07-27 09:31:52 0
IMPACT Prognostic Calculator
 
Resource Report
Resource Website
IMPACT Prognostic Calculator (RRID:SCR_004730) IMPACT Prognostic Calculator analysis service resource, service resource, data analysis service, production service resource A calculator that calculates the prediction models for 6 month outcome after Traumatic Brain Injury. Based on extensive prognostic analysis the IMPACT investigators have developed prognostic models for predicting 6 month outcome in adult patients with moderate to severe head injury (Glasgow Coma Scale <=12) on admission. By entering the characteristics into the calculator, the models will provide an estimate of the expected outcome at 6 months. We present three models of increasing complexity (Core, Core + CT, Core + CT + Lab). These models were developed and validated in collaboration with the CRASH trial collaborators on large numbers of individual patient data (the IMPACT database). The models discriminate well, and are particularly suited for purposes of classification and characterization of large cohorts of patients. Extreme caution is required when applying the estimated prognosis to individual patients. The sequential prediction models may be used as an aid to estimate 6 month outcome in patients with severe or moderate traumatic brain injury (TBI). However, the prediction rule can only complement, never replace, clinical judgment and can therefore be used only as a decision-support system. traumatic brain injury, head injury, brain injury, adult, human, severe, moderate, glasgow coma scale, one mind tbi has parent organization: IMPACT: International Mission for Prognosis and Analysis of Clinical Trials in TBI Traumatic brain injury NINDS NS 42691 nlx_143884 SCR_004730 International Mission for Prognosis and Analysis of Clinical Trials in TBI Prognostic Calculator 2026-07-27 09:32:06 0
INMEX
 
Resource Report
Resource Website
10+ mentions
INMEX (RRID:SCR_004173) INMEX analysis service resource, service resource, data analysis service, production service resource A web-based tool to support meta-analysis of multiple gene-expression data sets, as well as to enable integration of data sets from gene expression and metabolomics experiments. INMEX contains three functional modules. The data preparation module supports flexible data processing, annotation and visualization of individual data sets. The statistical analysis module allows researchers to combine multiple data sets based on P-values, effect sizes, rank orders and other features. The significant genes can be examined in functional analysis module for enriched Gene Ontology terms or Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, or expression profile visualization. INMEX has built-in support for common gene/metabolite identifiers (IDs), as well as 45 popular microarray platforms for human, mouse and rat. Complex operations are performed through a user-friendly web interface in a step-by-step manner. gene expression, meta-analysis, metabolomics, pathway, gene, metabolite, visualization, bio.tools is listed by: OMICtools
is listed by: Debian
is listed by: bio.tools
is related to: Gene Ontology
is related to: KEGG
is related to: Human Metabolome Database
has parent organization: University of British Columbia; British Columbia; Canada
Killam Trust ;
Canadian Institutes of Health Research
PMID:23766290 Acknowledgement requested biotools:inmex, OMICS_01546 https://bio.tools/inmex SCR_004173 INtegrative Meta-analysis of EXpression data, INMEX - INtegrative Meta-analysis of EXpression data 2026-07-27 09:31:57 19
Spliceman
 
Resource Report
Resource Website
1+ mentions
Spliceman (RRID:SCR_005354) Spliceman analysis service resource, service resource, data analysis service, production service resource An online tool that takes a set of DNA sequences with point mutations and returns a ranked list to predict the effects of point mutations on pre-mRNA splicing. The current implementation includes 11 genomes: human, chimp, rhesus, mouse, rat, dog, cat, chicken, guinea pig, frog and zebrafish. dna sequence, pre-mrna, splicing, pre-mrna splicing, point mutation, mutation, sequence variation, fasta is listed by: OMICtools
has parent organization: Brown University; Rhode Island; USA
PMID:22328782 Free, Non-commercial, Commercial use requires license OMICS_02259 SCR_005354 2026-07-27 09:32:15 5
GeneTerm Linker
 
Resource Report
Resource Website
1+ mentions
GeneTerm Linker (RRID:SCR_006385) GTLinker analysis service resource, service resource, data analysis service, production service resource Web application that filters and links enriched output data identifying sets of associated genes and terms, producing metagroups of coherent biological significance. The method uses fuzzy reciprocal linkage between genes and terms to unravel their functional convergence and associations. It can also be accessed through its web service. gene, functional annotation, function, functional metagroup, p-value, annotation, web service is listed by: OMICtools
is related to: Gene Ontology
is related to: KEGG
is related to: InterPro
has parent organization: Spanish National Research Council; Madrid; Spain
PMID:21949701 Acknowledgement requested OMICS_02227 SCR_006385 GeneTerm Linker - post enrichment functional association by non-redundant reciprocal linkage 2026-07-27 09:32:32 2
GeneTrail
 
Resource Report
Resource Website
100+ mentions
GeneTrail (RRID:SCR_006250) GeneTrail analysis service resource, service resource, data analysis service, production service resource A web-based application that analyzes gene sets for statistically significant accumulations of genes that belong to some functional category. Considered category types are: KEGG Pathways, TRANSPATH Pathways, TRANSFAC Transcription Factor, GeneOntology Categories, Genomic Localization, Protein-Protein Interactions, Coiled-coil domains, Granzyme-B clevage sites, and ELR/RGD motifs. The web server provides two statistical approaches, "Over-Representation Analysis" (ORA) comparing a reference set of genes to a test set, and "Gene Set Enrichment Analysis" (GSEA) scoring sorted lists of genes., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. pathway, microarray, enrichment, genomic, proteomic, function, transcription factor, genomic localization, protein-protein interaction, coiled-coil domain, granzyme-b clevage site, motif, bio.tools is listed by: OMICtools
is listed by: Debian
is listed by: bio.tools
is related to: KEGG
is related to: TRANSPATH
is related to: TRANSFAC
is related to: Gene Ontology
has parent organization: Saarland University; Saarbrucken; Germany
PMID:17526521 THIS RESOURCE IS NO LONGER IN SERVICE biotools:genetrail, OMICS_02236 https://bio.tools/genetrail SCR_006250 2026-07-27 09:32:30 106
Phenomizer
 
Resource Report
Resource Website
10+ mentions
Phenomizer (RRID:SCR_006157) analysis service resource, service resource, data analysis service, production service resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on March 31,2026. Phenomizer offers three different approaches to find the appropriate term for a phenotypic abnormality, indicated by the three tabs on the left hand side: Feature, Disease and Ontology. The Phenomizer is intended to be used by qualified and licensed physicians in order to provide assistance in reaching the correct diagnosis in patients with hereditary diseases and for use as a teaching aid. The Phenomizer does not make diagnoses. Rather, it produces a ranked list of possibilities that can be used by physicians as a part of the diagnostic workup. The Phenomizer does not contain information about all possible diagnoses or even all possible hereditary diseases. The Phenomizer should not be used to make medical decisions without the advice of a physician. feature, disease, ontology, clinical, differential diagnoses is related to: Human Phenotype Ontology
is related to: Human Phenotype Ontology
has parent organization: Charite - Universitatsmedizin Berlin; Berlin; Germany
PMID:19800049 THIS RESOURCE IS NO LONGER IN SERVICE nlx_151657 SCR_006157 Phenomizer - Clinical Diagnostics with Similarity Searches in Ontologies 2026-07-27 09:32:28 32

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