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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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NKI/Rockland Sample Resource Report Resource Website 10+ mentions |
NKI/Rockland Sample (RRID:SCR_009435) | data or information resource, data set | A phenotypically rich neuroimaging sample, consisting of data obtained from individuals between the ages of 4 and 85 years-old. All individuals included in the sample undergo semi-structured diagnostic psychiatric interviews, and complete a battery of psychiatric, cognitive and behavioral assessments in order to provide comprehensive phenotypic information for the purpose of exploring brain / behavior relationships. | image collection, young human, late adult human, neuroimaging, phenotype, fmri, dti, mprage, t2, psychiatric assessment, cognitive assessment, behavioral assessment, resting state fmri, dicom, nifti |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Rockland Download Link Script is related to: NKI-RS Multiband Imaging Test-Retest Pilot Dataset is related to: NKI-RS Enhanced Sample has parent organization: 1000 Functional Connectomes Project |
Aging | New York State Office of Mental Health and Research Foundation for Mental Hygiene ; NKI Center for Advanced Brain Imaging CABI ; the Brain Research Foundation Chicago ; the Stavros Niarchos Foundation ; NIMH P50 MH086385-S1 |
Creative Commons Attribution-NonCommercial License | nlx_155538 | http://www.nitrc.org/projects/dl_dataset | SCR_009435 | Nathan Kline Institute / Rockland Sample, NKI Rockland Sample, Nathan Kline Institute (NKI) / Rockland Sample | 2026-07-27 09:33:19 | 17 | |||||
|
Multimodal Surface Matching Resource Report Resource Website |
Multimodal Surface Matching (RRID:SCR_024929) | MSM | image analysis software, software resource, software application, registration software, data processing software | Software tool for registering cortical surfaces. Capable of driving alignment using wide variety of descriptors of brain architecture, function and connectivity. | registering cortical surfaces, brain architecture, function and connectivity, | is a plug in for: FSL | NIMH 1U54MH091657; NIMH F30 MH097312 |
PMID:24939340 | Free, Freely available | SCR_024929 | MSM:Multimodal Surface Matching | 2026-07-27 09:37:19 | 0 | ||||||
|
FMRIB’s Integrated Registration and Segmentation Tool Resource Report Resource Website 1+ mentions |
FMRIB’s Integrated Registration and Segmentation Tool (RRID:SCR_024921) | FIRST | data analysis software, image analysis software, software resource, software application, registration software, data processing software, segmentation software | Software model based segmentation and registration tool. Used for segmentation of sub-cortical structures. Introduces basic segmentation and vertex analysis for detecting group differences. | Functional Magnetic Resonance Imaging of the Brain, segmentation, registration, volumetric segmentation, performing vertex analysis, |
is related to: Multimodal Image Segmentation Tool is a plug in for: FSL |
NCRR P41 RR14075; NINDS R01 NS052585; NCRR R01 RR16594; NIMH K08 MH01573; NIMH K01 MH01798; NIDA R01 DA017905 |
PMID:21352927 | Free, Freely available | SCR_024921 | , Functional Magnetic Resonance Imaging of the Brain's Integrated Registration and Segmentation Tool | 2026-07-27 09:37:15 | 2 | ||||||
|
WASP Resource Report Resource Website 1+ mentions |
WASP (RRID:SCR_025497) | software resource, source code, software toolkit | Software allele-specific pipeline for unbiased read mapping and molecular QTL discovery. Allele-specific software for robust molecular quantitative trait locus discovery. | molecular QTLs discovery, unbiased allele-specific read mapping and discovery, molecular QTLs, unbiased allele-specific read, mapping and discovery, | Howard Hughes Medical Institute ; NHGRI HG007036; NHGRI HG006123; NIMH MH101825; NIGMS GM007197; NSF |
PMID:26366987 | Free, Available for download, Freely available, | SCR_025497 | 2026-07-27 09:37:25 | 3 | |||||||||
|
CellTax vignette Resource Report Resource Website 1+ mentions |
CellTax vignette (RRID:SCR_017000) | data or information resource, data set | Cellular Taxonomy of Mouse Visual Cortex by analyzing gene expression patterns at single cell level. Construction of cellular taxonomy of one cortical region, primary visual cortex, in adult mice done on basis of single cell RNA sequencing. | data, classification, cell, type, mammalian, brain, cellular, taxonomy, mouse, visual, cortex, gene, expression, pattern, cortical, region |
is related to: Allen Brain Atlas API is related to: Allen Mouse Brain Reference Atlas is related to: Allen Cell Types Database has parent organization: Allen Institute for Brain Science has parent organization: Allen Brain Atlas |
Allen Institute for Brain Science ; NEI R01 EY023173; NIMH U01 MH105982 |
PMID:26727548 | Free, Public | SCR_017000 | Cellular Taxonomy of the Mouse Visual Cortex, Cellular Taxonomy of the Mouse Visual Cortex Allen Institue for Brain Science | 2026-07-27 09:35:28 | 3 | |||||||
|
histoCAT Resource Report Resource Website 1+ mentions |
histoCAT (RRID:SCR_026499) | source code, software resource, software toolkit | Software package to visualize and analyse multiplexed image cytometry data interactively. | visualize and analyse multiplexed image, image cytometry data, interactively | NIA R01AG066027; NIMH U19MH114830 |
PMID:28783155 | Free, Available for download, Freely available | SCR_026499 | Histology Topography Cytometry Analysis Toolbox | 2026-07-27 09:37:39 | 2 | ||||||||
|
Borzoi Resource Report Resource Website 1+ mentions |
Borzoi (RRID:SCR_026619) | source code, software resource, software toolkit | Software package to access the Borzoi models, which are convolutional neural networks trained to predict RNA-seq coverage at 32bp resolution given 524kb input sequences. | Borzoi models access, convolutional neural networks, predict RNA-seq coverage, | Common Fund of the Office of the Director ; NCI ; NHGRI ; NHLBI ; NIDA ; NIMH ; NINDS |
PMID:39779956 | Free, Available for download, Freely available | SCR_026619 | 2026-07-27 09:37:40 | 1 | |||||||||
|
Ecosystem for Multi-modal Brain-behavior Experimentation and Research Resource Report Resource Website 1+ mentions |
Ecosystem for Multi-modal Brain-behavior Experimentation and Research (RRID:SCR_026700) | EMBER | service resource, storage service resource, data repository, data or information resource | BRAIN Initiative data archive for multi-modal neurophysiological and behavioral data, supporting the Brain Behavior Quantification and Synchronization (BBQS) Program. Accessible and versatile data archive for storage, processing, and curation of multimodal neurophysiological and behavioral datasets. EMBER extends established BRAIN Initiative data infrastructure, provides new data harmonization and synchronization capabilities, and supports scalable integrations for data coordination and AI driven batch processing to enable the goals of the BBQS program. | data archive, multi-modal neurophysiological data, behavioral data, Brain Behavior Quantification and Synchronization (BBQS) Program, |
is related to: Distributed Archives for Neurophysiology Data Integration is related to: Brain Observatory Storage Service and Database (BossDB) has parent organization: BRAIN Initiative has parent organization: Johns Hopkins University; Maryland; USA |
NIMH R24MH136632; NIDA R24DA064430 |
Free, Freely available | SCR_026700 | , Ecosystem for Multi-modal Brain-behavior Experimentation and Research (EMBER), EMBER Archive | 2026-07-27 09:37:42 | 6 | |||||||
|
NIMP Analytics Resource Report Resource Website |
NIMP Analytics (RRID:SCR_028218) | NIMP | web service, project portal, software resource, portal, data access protocol, data or information resource | Neuroanatomy-anchored Information Management Platform for collaborative BICAN data generation developed by UTHealth Houston. Serves as metadata tracking engine to support generation, management, and sharing of brain research data. Integrates data production pipelines across brain banks, laboratories, sequencing centers, and data archives. Platform enables integrative and collaborative, consortium-scale FAIR data generation within the BICAN project. Platform is designed to manage complex dataset, including tissue samples and sequencing data, through Specimen Portal and Sequence Library Portal. Portals provide multiple types of data interfaces through dashboards, APIs, faceted queries, and batch data ingestion and exporting. | FAIR, BICAN, CUBIE, Sample Tracking, Data Ecosystem, Brain Tissue, Multi-Omics Profiling Expression Database, neuroanatomy, collaborative BICAN data generation, | is organization facet of: BRAIN Initiative Cell Atlas Network | NIMH U24MH130988 | PMID:41573954 | Free, Freely available, | https://brain-specimenportal.org | SCR_028218 | Neuroanatomy-Anchored Information Management Platform (NIMP) | 2026-07-27 09:38:06 | 0 | |||||
|
dreamlet Resource Report Resource Website |
dreamlet (RRID:SCR_028168) | source code, software resource, software toolkit | Software R package enables differential expression analysis on multi-sample single cell datasets using linear (mixed) models with precision weights. | Perform differential expression analysis, multi-sample single cell datasets, linear mixed models, precision weights, | NIA R01AG067025; NIA R01AG065582; NIA R01AG050986; NIA P30AG066514; NIMH R01MH109677; NIMH R01MH125246; NIMH RF1MH128970; NIMH U01MH116442; NINDS U01NS125580 |
PMID:36993704 | Free, Available for download, Freely available | SCR_028168 | 2026-07-27 09:38:07 | 0 | |||||||||
|
PERI: Prospective Evaluation of Reproductive aging Indicators Resource Report Resource Website |
PERI: Prospective Evaluation of Reproductive aging Indicators (RRID:SCR_028698) | software resource, source code, software toolkit | Software R code to apply Stages of Reproductive Aging Workshop + 10 stages to prospectively collected vaginal bleeding data among a cohort of Black women aged 40–55 years. Used to apply STRAW+10 stages to prospectively tracked menstrual bleeding data in a longitudinal cohort study of perimenopausal women. | Stages of Reproductive Aging Workshop, perimenopausal women, prospectively tracked menstrual bleeding data, STRAW+ 10 stages, prospectively collected vaginal bleeding data, | NIMH R01MH128244; NIMH F32MH134528; NINDS T32NS096050 |
PMID:41576711 | Free, Available for download, Freely available | SCR_028698 | 2026-07-27 09:38:15 | 0 |
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