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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Tissue Microarray Ontology Resource Report Resource Website |
Tissue Microarray Ontology (RRID:SCR_010434) | TMA | controlled vocabulary, data or information resource, ontology | An OWL schema that expands upon the Tissue microarray (TMA) data exchange specification to assist in data sharing and integration. | owl | is listed by: BioPortal | nlx_157611 | SCR_010434 | 2026-07-28 09:42:46 | 0 | |||||||||
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Bone and Cartilage Tissue Engineering Ontology Resource Report Resource Website |
Bone and Cartilage Tissue Engineering Ontology (RRID:SCR_006595) | BCTEO | controlled vocabulary, data or information resource, ontology | Ontology that describes the field of Tissue Engineering for what concerns bone and cartilage tissues. | obo | is listed by: BioPortal | nlx_157341 | SCR_006595 | 2026-07-28 09:41:38 | 0 | |||||||||
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Biologie Hors Nomenclature Resource Report Resource Website |
Biologie Hors Nomenclature (RRID:SCR_010249) | BHN | controlled vocabulary, data or information resource, ontology | Nomenclature for innovative activity of biology and anatomo-pathology performed especially in the Centres Hospitalo-Universitaires is usually called activity off nomenclature (BHN for nomenclature and PHN biology for the anatomo-pathology off nomenclature). This character of nomenclature means that health insurance has not yet incorporated these acts in the Nomenclature of acts of biology medical (NABM) or the General Nomenclature of professional acts (NGAP). | owl | is listed by: BioPortal | nlx_157335 | http://www.chu-montpellier.fr/publication/inter_pub/R300/rubrique.jsp | SCR_010249 | 2026-07-28 09:42:40 | 0 | ||||||||
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Pathogen Transmission Ontology Resource Report Resource Website |
Pathogen Transmission Ontology (RRID:SCR_010404) | PTRANS | controlled vocabulary, data or information resource, ontology | Vocabulary that describes a process that is the means of how a pathogen is transmitted from one host, reservoir, or source to another host. This transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles. | obo | is listed by: BioPortal | nlx_157542 | SCR_010404 | 2026-07-28 09:42:45 | 0 | |||||||||
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Plant Structure Development Stage Resource Report Resource Website 1+ mentions |
Plant Structure Development Stage (RRID:SCR_010410) | PSDS | controlled vocabulary, data or information resource, ontology | A controlled vocabulary of growth and developmental stages in various plants. Note that this has been subsumed into the Plant Ontology (PO). This file is created by filtering plant_ontology_assert.obo to contain only terms from the plant structure development stage branch of the PO. For more information, please see: http://palea.cgrb.oregonstate.edu/viewsvn/Poc/tags/live/ | obo |
is listed by: BioPortal has parent organization: Plant Ontology |
nlx_157555 | http://www.plantontology.org | SCR_010410 | 2026-07-28 09:42:45 | 2 | ||||||||
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Ontology for General Medical Science Resource Report Resource Website |
Ontology for General Medical Science (RRID:SCR_010384) | OGMS | controlled vocabulary, data or information resource, ontology | An ontology based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities to address some of the issues raised at the Workshop on Ontology of Diseases (Dallas, TX) and the Signs, Symptoms, and Findings Workshop (Milan, Italy). OGMS was formerly called the clinical phenotype ontology. Terms from OGMS hang from the Basic Formal Ontology. | owl, clinical, phenotype, medicine, pathological, molecular, cellular, organismal, multi-organismal |
is used by: TRANSFoRm Clinical Data Integration Model is listed by: BioPortal is listed by: OBO is listed by: Google Code |
nlx_157515 | http://purl.bioontology.org/ontology/OGMS, http://purl.obolibrary.org/obo/ogms.owl | SCR_010384 | Clinical Phenotype Ontology | 2026-07-28 09:42:45 | 0 | |||||||
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Menelas Project Top-Level Ontology Resource Report Resource Website |
Menelas Project Top-Level Ontology (RRID:SCR_010356) | TOP-MENELAS | controlled vocabulary, data or information resource, ontology | Ontology to (i) Provide better account of and better access to medical information through natural languages in order to help physicians in their daily practice, and to (ii) Enhance European cooperation by multilingual access to standardised medical nomenclatures. The major achievements of MENELAS are the realization of its two functional systems: (i) The Document Indexing System encodes free text PDSs into both an internal representation (a set of Conceptual Graphs) and international nomenclature codes (ICD-9-CM). Instances of the Document Indexing System have been realised for French, English and Dutch ; (ii) The Consultation System allows users to access the information contained in PDSs previously indexed by the Document Indexing System. The test domain for the project was coronary diseases. The existing prototype shows promising results for information retrieval from natural language PDSs and for automatically encoding PDSs into an existing classification such as ICD-9-CM. A set of components, tools, knowledge bases and methods has also been produced by the project. These include language-independent ontology and models for the domain of coronary diseases; conceptual description of the relevant ICD-9-CM codes. This ontology includes a top-ontology, a top-domain ontology and a domain ontology (Coronay diseases surgery). The menelas-top ontology here is the part of the whole ontology without any reference to medical domain. | owl | is listed by: BioPortal | nlx_157473 | SCR_010356 | 2026-07-28 09:42:44 | 0 | |||||||||
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MicroRNA Ontology Resource Report Resource Website |
MicroRNA Ontology (RRID:SCR_010360) | MIRNAO | controlled vocabulary, data or information resource, ontology | An application ontology for microRNAs. | owl | is listed by: BioPortal | nlx_157477 | https://code.google.com/p/mirna-ontology/ | SCR_010360 | 2026-07-28 09:42:44 | 0 | ||||||||
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Microbial Typing Ontology Resource Report Resource Website |
Microbial Typing Ontology (RRID:SCR_010362) | TYPON | controlled vocabulary, data or information resource, ontology | Ontology that provides a comprehensive description of the existing microbial typing methods for the identification of bacterial Isolates and their classification. Such a description constitutes an universal format for the exchange of information on the microbial typing field, providing a vehicle for the integration of the numerous disparate online databases. In its current version, TyPon describes most used microbial typing methods but it is, and always will be, a work in progress given the constant advances in the microbial typing field. | owl | is listed by: BioPortal | nlx_157479 | SCR_010362 | 2026-07-28 09:42:44 | 0 | |||||||||
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Cognitive Paradigm Ontology Resource Report Resource Website 1+ mentions |
Cognitive Paradigm Ontology (RRID:SCR_002235) | CogPO | controlled vocabulary, data or information resource, ontology | Ontology used to describe the experimental conditions within cognitive and behavioral experiments, primarily in humans for application and use in the functional neuroimaging community. CogPO has been developed through the integration of the Functional Imaging Biomedical Informatics Research Network (FBIRN) Human Imaging Database (HID) and the BrainMap Database. The design of CogPO concentrates on what can be observed directly: categorization of each paradigm in terms of (1) the stimulus presented to the subjects, (2) the requested instructions, and (3) the returned response. | functional neuroimaging, owl, cognition, behavior |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: BioPortal is related to: Human Imaging Database has parent organization: University of Texas Health Science Center at San Antonio; Texas; USA has parent organization: Mind Research Network |
NIMH 1R01MH084812-01A1 | Free, Freely available | nlx_155537 | http://www.nitrc.org/projects/cogpo | SCR_002235 | 2026-07-28 09:40:35 | 9 | ||||||
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Epoch Clinical Trial Ontology Resource Report Resource Website |
Epoch Clinical Trial Ontology (RRID:SCR_000366) | CTONT | controlled vocabulary, data or information resource, ontology | Ontology of clinical trial terminology. | owl | is listed by: BioPortal | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157400 | SCR_000366 | 2026-07-28 09:39:58 | 0 | ||||||||
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MeGO Resource Report Resource Website |
MeGO (RRID:SCR_000110) | MeGO | controlled vocabulary, data or information resource, ontology | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Gene Ontology dedicated to the functions of mobile genetic elements. The terms defined are used to annotate phage and plasmid protein families in ACLAME. Note: The phage ontology PhiGO has now been incorporated in MeGO and can thus be accessed in MeGO version 1.0 and up. | phage, plasmid, protein family, mobile genetic element, obo |
is listed by: BioPortal is related to: OBO is related to: AmiGO is related to: Gene Ontology has parent organization: A Classification of Mobile genetic Elements |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156939 | SCR_000110 | Mobile Genetic Element Ontology | 2026-07-28 09:39:56 | 0 | |||||||
|
Vertebrate Skeletal Anatomy Ontology Resource Report Resource Website |
Vertebrate Skeletal Anatomy Ontology (RRID:SCR_000313) | VSAO | controlled vocabulary, data or information resource, ontology | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. An anatomy ontology covering the vertebrate skeletal system that integrates terms for skeletal cells, tissues, biological processes, organs (skeletal elements such as bones and cartilages), and subdivisions of the skeletal system. | obo |
is used by: Teleost Anatomy Ontology is listed by: BioPortal |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157624 | SCR_000313 | 2026-07-28 09:39:59 | 0 | ||||||||
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Research Network and Patient Registry Inventory Ontology Resource Report Resource Website |
Research Network and Patient Registry Inventory Ontology (RRID:SCR_000308) | RNPRIO | controlled vocabulary, data or information resource, ontology | Ontology for Inventories of Clinical Data Research Networks, Patient-Powered Research Networks, and Patient Registries | owl | is listed by: BioPortal | nlx_157575 | SCR_000308 | 2026-07-28 09:39:58 | 0 | |||||||||
|
EnvO Resource Report Resource Website 10+ mentions |
EnvO (RRID:SCR_000182) | EnvO | controlled vocabulary, data or information resource, ontology | Community ontology for the concise, controlled description of environmental features and habitats. It provides a structured vocabulary that is designed to support the annotation of any organism or biological sample with environment descriptors. EnvO contains terms for biomes, environmental features, and environmental material. | biome, environmental feature, environmental material, environment, habitat |
is listed by: BioPortal is related to: Gramene |
The community can contribute to this resource | nlx_153832 | SCR_000182 | Environment Ontology | 2026-07-28 09:39:56 | 20 | |||||||
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Information Artifact Ontology Resource Report Resource Website 1+ mentions |
Information Artifact Ontology (RRID:SCR_000477) | IAO | controlled vocabulary, data or information resource, ontology | An ontology of information entities, originally driven by work by the OBI digital entity and realizable information entity branch. Please note: The ontology metrics displayed by BioPortal do not distinguish IAO-developed terms from terms imported from other ontologies. | owl, information, ontology |
uses: Ontology for Biomedical Investigations is used by: TRANSFoRm Clinical Data Integration Model is listed by: BioPortal is listed by: OBO is listed by: Google Code is related to: Porifera Ontology is related to: Mental Functioning Ontology is related to: Beta Cell Genomics Ontology is related to: Biological Collections Ontology is related to: Chemical Methods Ontology is related to: Influenza Ontology is related to: Ontology for Genetic Interval is related to: Ontology for Parasite LifeCycle is related to: Ontology of Adverse Events is related to: Ontology of Medically Related Social Entities is related to: Population and Community Ontology is related to: Software Ontology is related to: Adverse Event Reporting Ontology is related to: Ontology for Biomedical Investigations |
Free, Available for download, Freely available | nlx_157441 | https://code.google.com/p/information-artifact-ontology/, http://purl.bioontology.org/ontology/IAO, http://purl.obolibrary.org/obo/iao.owl | http://purl.obolibrary.org/obo/iao | SCR_000477 | 2026-07-28 09:40:00 | 2 | ||||||
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Nursing Interventions Classification Resource Report Resource Website |
Nursing Interventions Classification (RRID:SCR_000911) | NIC | controlled vocabulary, data or information resource, ontology | Ontology of nursing interventions classification. | umls | is listed by: BioPortal | nlx_157512 | SCR_000911 | 2026-07-28 09:40:06 | 0 | |||||||||
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International Classification of Primary Care - 2 PLUS Resource Report Resource Website |
International Classification of Primary Care - 2 PLUS (RRID:SCR_000909) | ICPC2P | controlled vocabulary, data or information resource, ontology | Ontology of the international classification of primary care -2 PLUS | umls | is listed by: BioPortal | nlx_157454 | SCR_000909 | 2026-07-28 09:40:05 | 0 | |||||||||
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Synthetic Biology Open Language Visual Ontology Resource Report Resource Website |
Synthetic Biology Open Language Visual Ontology (RRID:SCR_001261) | SBOL | controlled vocabulary, data or information resource, ontology | Ontology to represent standardized graphical notation for synthetic biology. | obo | is listed by: BioPortal | Free, Available for download, Freely available | nlx_157601 | SCR_001261 | 2026-07-28 09:40:13 | 0 | ||||||||
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Teleost Taxonomy Ontology Resource Report Resource Website |
Teleost Taxonomy Ontology (RRID:SCR_001611) | TTO | controlled vocabulary, data or information resource, ontology | An ontology of taxonomic terms (names of taxonomic groups) used in the systematics of fish, including non-teleost groups such as Chondrichthys (sharks and rays), Sarcopterygii (lungfish and coelacanths), lampreys, and hagfish. It contains (as of August 2010) over 38,500 names, and over 44,000 taxonomic synonyms. A majority of the taxonomic names and synonyms were made available from the Catalog of Fishes. In July 2010 they added nearly 15,000 common names provided by Fishbase. Additional names and synonyms are added as a result of their curation activities. The ontology is being used to facilitate annotation of phenotypes, particularly for taxa that are not covered by NCBI because no submissions of molecular data have been made. Taxonomy ontologies can also be valuable in annotating legacy data, where authors make phenotype or ecological assertions (e.g., host-parasite associations) that refer to groups that are reorganized or no longer recognized. The taxonomy ontology serves as the source of taxa for their project's use for identifying evolutionary changes that match the phenotype of a zebrafish mutant. | taxonomy, term, name, group, fish, phenotype, obo |
is used by: Vertebrate Taxonomy Ontology is listed by: BioPortal is related to: Catalog of Fishes is related to: FishBase has parent organization: Phenoscape Knowledgebase |
Free, Freely available | nlx_153877 | https://www.nescent.org/phenoscape/ | SCR_001611 | 2026-07-28 09:40:13 | 0 |
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