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http://purl.bioontology.org/ontology/TMA

An OWL schema that expands upon the Tissue microarray (TMA) data exchange specification to assist in data sharing and integration.

Proper citation: Tissue Microarray Ontology (RRID:SCR_010434) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/BCTEO

Ontology that describes the field of Tissue Engineering for what concerns bone and cartilage tissues.

Proper citation: Bone and Cartilage Tissue Engineering Ontology (RRID:SCR_006595) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/BHN

Nomenclature for innovative activity of biology and anatomo-pathology performed especially in the Centres Hospitalo-Universitaires is usually called activity off nomenclature (BHN for nomenclature and PHN biology for the anatomo-pathology off nomenclature). This character of nomenclature means that health insurance has not yet incorporated these acts in the Nomenclature of acts of biology medical (NABM) or the General Nomenclature of professional acts (NGAP).

Proper citation: Biologie Hors Nomenclature (RRID:SCR_010249) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/PTRANS

Vocabulary that describes a process that is the means of how a pathogen is transmitted from one host, reservoir, or source to another host. This transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles.

Proper citation: Pathogen Transmission Ontology (RRID:SCR_010404) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/PSDS

A controlled vocabulary of growth and developmental stages in various plants. Note that this has been subsumed into the Plant Ontology (PO). This file is created by filtering plant_ontology_assert.obo to contain only terms from the plant structure development stage branch of the PO. For more information, please see: http://palea.cgrb.oregonstate.edu/viewsvn/Poc/tags/live/

Proper citation: Plant Structure Development Stage (RRID:SCR_010410) Copy   

•   Source: SciCrunch Registry

http://code.google.com/p/ogms/

An ontology based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities to address some of the issues raised at the Workshop on Ontology of Diseases (Dallas, TX) and the Signs, Symptoms, and Findings Workshop (Milan, Italy). OGMS was formerly called the clinical phenotype ontology. Terms from OGMS hang from the Basic Formal Ontology.

Proper citation: Ontology for General Medical Science (RRID:SCR_010384) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/TOP-MENELAS

Ontology to (i) Provide better account of and better access to medical information through natural languages in order to help physicians in their daily practice, and to (ii) Enhance European cooperation by multilingual access to standardised medical nomenclatures. The major achievements of MENELAS are the realization of its two functional systems: (i) The Document Indexing System encodes free text PDSs into both an internal representation (a set of Conceptual Graphs) and international nomenclature codes (ICD-9-CM). Instances of the Document Indexing System have been realised for French, English and Dutch ; (ii) The Consultation System allows users to access the information contained in PDSs previously indexed by the Document Indexing System. The test domain for the project was coronary diseases. The existing prototype shows promising results for information retrieval from natural language PDSs and for automatically encoding PDSs into an existing classification such as ICD-9-CM. A set of components, tools, knowledge bases and methods has also been produced by the project. These include language-independent ontology and models for the domain of coronary diseases; conceptual description of the relevant ICD-9-CM codes. This ontology includes a top-ontology, a top-domain ontology and a domain ontology (Coronay diseases surgery). The menelas-top ontology here is the part of the whole ontology without any reference to medical domain.

Proper citation: Menelas Project Top-Level Ontology (RRID:SCR_010356) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/MIRNAO

An application ontology for microRNAs.

Proper citation: MicroRNA Ontology (RRID:SCR_010360) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/TYPON

Ontology that provides a comprehensive description of the existing microbial typing methods for the identification of bacterial Isolates and their classification. Such a description constitutes an universal format for the exchange of information on the microbial typing field, providing a vehicle for the integration of the numerous disparate online databases. In its current version, TyPon describes most used microbial typing methods but it is, and always will be, a work in progress given the constant advances in the microbial typing field.

Proper citation: Microbial Typing Ontology (RRID:SCR_010362) Copy   

•   Source: SciCrunch Registry

http://cogpo.org

Ontology used to describe the experimental conditions within cognitive and behavioral experiments, primarily in humans for application and use in the functional neuroimaging community. CogPO has been developed through the integration of the Functional Imaging Biomedical Informatics Research Network (FBIRN) Human Imaging Database (HID) and the BrainMap Database. The design of CogPO concentrates on what can be observed directly: categorization of each paradigm in terms of (1) the stimulus presented to the subjects, (2) the requested instructions, and (3) the returned response.

Proper citation: Cognitive Paradigm Ontology (RRID:SCR_002235) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/CTONT

Ontology of clinical trial terminology.

Proper citation: Epoch Clinical Trial Ontology (RRID:SCR_000366) Copy   

•   Source: SciCrunch Registry

http://aclame.ulb.ac.be/Classification/mego.html

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Gene Ontology dedicated to the functions of mobile genetic elements. The terms defined are used to annotate phage and plasmid protein families in ACLAME. Note: The phage ontology PhiGO has now been incorporated in MeGO and can thus be accessed in MeGO version 1.0 and up.

Proper citation: MeGO (RRID:SCR_000110) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/VSAO

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. An anatomy ontology covering the vertebrate skeletal system that integrates terms for skeletal cells, tissues, biological processes, organs (skeletal elements such as bones and cartilages), and subdivisions of the skeletal system.

Proper citation: Vertebrate Skeletal Anatomy Ontology (RRID:SCR_000313) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/RNPRIO

Ontology for Inventories of Clinical Data Research Networks, Patient-Powered Research Networks, and Patient Registries

Proper citation: Research Network and Patient Registry Inventory Ontology (RRID:SCR_000308) Copy   

•   Source: SciCrunch Registry

http://environmentontology.org/

Community ontology for the concise, controlled description of environmental features and habitats. It provides a structured vocabulary that is designed to support the annotation of any organism or biological sample with environment descriptors. EnvO contains terms for biomes, environmental features, and environmental material.

Proper citation: EnvO (RRID:SCR_000182) Copy   

•   Source: SciCrunch Registry

https://github.com/information-artifact-ontology/IAO

An ontology of information entities, originally driven by work by the OBI digital entity and realizable information entity branch. Please note: The ontology metrics displayed by BioPortal do not distinguish IAO-developed terms from terms imported from other ontologies.

Proper citation: Information Artifact Ontology (RRID:SCR_000477) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/NIC

Ontology of nursing interventions classification.

Proper citation: Nursing Interventions Classification (RRID:SCR_000911) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ICPC2P

Ontology of the international classification of primary care -2 PLUS

Proper citation: International Classification of Primary Care - 2 PLUS (RRID:SCR_000909) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/SBOL

Ontology to represent standardized graphical notation for synthetic biology.

Proper citation: Synthetic Biology Open Language Visual Ontology (RRID:SCR_001261) Copy   

•   Source: SciCrunch Registry

https://blog.phenoscape.org/2008/05/14/the-teleost-taxonomy-ontology/

An ontology of taxonomic terms (names of taxonomic groups) used in the systematics of fish, including non-teleost groups such as Chondrichthys (sharks and rays), Sarcopterygii (lungfish and coelacanths), lampreys, and hagfish. It contains (as of August 2010) over 38,500 names, and over 44,000 taxonomic synonyms. A majority of the taxonomic names and synonyms were made available from the Catalog of Fishes. In July 2010 they added nearly 15,000 common names provided by Fishbase. Additional names and synonyms are added as a result of their curation activities. The ontology is being used to facilitate annotation of phenotypes, particularly for taxa that are not covered by NCBI because no submissions of molecular data have been made. Taxonomy ontologies can also be valuable in annotating legacy data, where authors make phenotype or ecological assertions (e.g., host-parasite associations) that refer to groups that are reorganized or no longer recognized. The taxonomy ontology serves as the source of taxa for their project's use for identifying evolutionary changes that match the phenotype of a zebrafish mutant.

Proper citation: Teleost Taxonomy Ontology (RRID:SCR_001611) Copy   

•   Source: SciCrunch Registry