Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Microbial Typing Ontology Resource Report Resource Website |
Microbial Typing Ontology (RRID:SCR_010362) | TYPON | controlled vocabulary, ontology, data or information resource | Ontology that provides a comprehensive description of the existing microbial typing methods for the identification of bacterial Isolates and their classification. Such a description constitutes an universal format for the exchange of information on the microbial typing field, providing a vehicle for the integration of the numerous disparate online databases. In its current version, TyPon describes most used microbial typing methods but it is, and always will be, a work in progress given the constant advances in the microbial typing field. | owl | is listed by: BioPortal | nlx_157479 | SCR_010362 | 2026-07-27 09:33:36 | 0 | |||||||||
|
Single-Nucleotide Polymorphism Ontology Resource Report Resource Website |
Single-Nucleotide Polymorphism Ontology (RRID:SCR_010428) | SNPO | controlled vocabulary, ontology, data or information resource | A domain ontology that provides a formal representation (OWL-DL) of genomic variations. Despite its name it is not limited to the representation of SNPs but it encompasses genomic variations in a broader meaning. SNP-Ontology is general enough to enable the representation of variations observed in genome of various species. Latest versions of SNP-Ontology include the representation of haplotype and of CNV. The unambiguous representation of genomic variations provided by SNP-Ontology enables to integrate heterogeneous data related to genomic variations. To achieve this goal SNP-Ontology enables (1) to represent one variation in accordance with various ways that exist for describing it, (2) to represent the equivalence between two distinct descriptions of one variation, and (3) to represent correspondence between a genomic variation and its outcome at the transcriptome and proteome levels. | owl | is listed by: BioPortal | nlx_157587 | SCR_010428 | SNP Ontology, Single-Nucleotide Polymorphism (SNP) Ontology | 2026-07-27 09:33:37 | 0 | ||||||||
|
Terminological and Ontological Knowledge Resources Ontology Resource Report Resource Website |
Terminological and Ontological Knowledge Resources Ontology (RRID:SCR_010432) | TOK | controlled vocabulary, ontology, data or information resource | An Ontology describing Resources having different formats. This Ontology can be used to annotate and describe Terminological, Ontological Knowledge resources. | owl | is listed by: BioPortal | nlx_157608 | SCR_010432 | 2026-07-27 09:33:44 | 0 | |||||||||
|
Tissue Microarray Ontology Resource Report Resource Website |
Tissue Microarray Ontology (RRID:SCR_010434) | TMA | controlled vocabulary, ontology, data or information resource | An OWL schema that expands upon the Tissue microarray (TMA) data exchange specification to assist in data sharing and integration. | owl | is listed by: BioPortal | nlx_157611 | SCR_010434 | 2026-07-27 09:33:37 | 0 | |||||||||
|
Pathogen Transmission Ontology Resource Report Resource Website |
Pathogen Transmission Ontology (RRID:SCR_010404) | PTRANS | controlled vocabulary, ontology, data or information resource | Vocabulary that describes a process that is the means of how a pathogen is transmitted from one host, reservoir, or source to another host. This transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles. | obo | is listed by: BioPortal | nlx_157542 | SCR_010404 | 2026-07-27 09:33:37 | 0 | |||||||||
|
Plant Structure Development Stage Resource Report Resource Website 1+ mentions |
Plant Structure Development Stage (RRID:SCR_010410) | PSDS | controlled vocabulary, ontology, data or information resource | A controlled vocabulary of growth and developmental stages in various plants. Note that this has been subsumed into the Plant Ontology (PO). This file is created by filtering plant_ontology_assert.obo to contain only terms from the plant structure development stage branch of the PO. For more information, please see: http://palea.cgrb.oregonstate.edu/viewsvn/Poc/tags/live/ | obo |
is listed by: BioPortal has parent organization: Plant Ontology |
nlx_157555 | http://www.plantontology.org | SCR_010410 | 2026-07-27 09:33:37 | 2 | ||||||||
|
Physical Medicine and Rehabilitation Resource Report Resource Website |
Physical Medicine and Rehabilitation (RRID:SCR_005948) | PMR | controlled vocabulary, ontology, data or information resource | Ontology for knowledge representation related to computer-based decision support in rehabilitation; concepts and relationships in the rehabilitation domain, integrating clinical practice, the ICD (specifically its 11th revision), the clinical investigator record ontology, the ICF and SNOMED CT. | owl | is listed by: BioPortal | nlx_157551 | SCR_005948 | 2026-07-27 09:32:25 | 0 | |||||||||
|
Human Phenotype Ontology Resource Report Resource Website 50+ mentions |
Human Phenotype Ontology (RRID:SCR_006016) | HPO, HP | controlled vocabulary, ontology, data or information resource | Provides standardized vocabulary of phenotypic abnormalities encountered in human disease. Structured and controlled vocabulary for phenotypic features encountered in human hereditary and other disease. HPO is being developed in collaboration with members of OBO Foundry (Open Biological and Biomedical Ontologies), and logical definitions for HPO terms are being developed using PATO and a number of other ontologies including FMA, GO, ChEBI, and MPATH. | phenotype, genetics, disease, phenomizer, obo, clinical, phenome, pathological, organismal, FASEB list |
uses: OMIM uses: Phenexplorer is used by: DisGeNET is used by: HmtPhenome is used by: MONARCH Initiative is used by: NIF Data Federation is listed by: BioPortal is listed by: OBO is related to: Phenexplorer is related to: Phenomizer is related to: PhenoTips is related to: Neurocarta is related to: GWASdb is related to: Phenomizer has parent organization: Charite - Universitatsmedizin Berlin; Berlin; Germany works with: Human Mouse Disease Connection |
Monogenic disease, Hereditary disease | PMID:20412080 | Free, Freely available | SCR_006219, nlx_151406, nlx_151835 | http://purl.bioontology.org/ontology/HP, http://compbio.charite.de/svn/hpo/trunk/src/ontology/human-phenotype-ontology.obo | SCR_006016 | Human Phenotype Ontology (HPO), Human Phenotype Ontology | 2026-07-27 09:32:26 | 73 | ||||
|
Reference Sequence Annotation Resource Report Resource Website 1+ mentions |
Reference Sequence Annotation (RRID:SCR_006095) | RSA | controlled vocabulary, ontology, data or information resource | An ontology for sequence annotations and how to preserve them with reference sequences. | owl | is listed by: BioPortal | nlx_157571 | SCR_006095 | 2026-07-27 09:32:27 | 2 | |||||||||
|
Vaccine Ontology Resource Report Resource Website 1+ mentions |
Vaccine Ontology (RRID:SCR_006271) | VO | controlled vocabulary, ontology, data or information resource | A biomedical ontology in the vaccine domain | owl |
is used by: Ontology of Vaccine Adverse Events is listed by: BioPortal |
PMID:21871085 | nlx_157621 | SCR_006271 | 2026-07-27 09:32:30 | 1 | ||||||||
|
Adult Mouse Anatomy Ontology Resource Report Resource Website 1+ mentions |
Adult Mouse Anatomy Ontology (RRID:SCR_006568) | MA | controlled vocabulary, ontology, data or information resource |
Ontology that organizes anatomical structures for the adult mouse (Theiler stage 28) spatially and functionally, using ''is a'' and ''part of'' relationships. The ontology is used to describe expression data for the adult mouse and phenotype data pertinent to anatomy in standardized ways. The browser can be used to view anatomical terms and their relationships in a hierarchical display. |
functionally, adult mouse, anatomical, anatomy, phenotype, postnatal, structure, theiler stage 28, obo, gene expression |
is listed by: BioPortal is related to: Bgee: dataBase for Gene Expression Evolution has parent organization: Gene Expression Database |
NIH ; NICHD HD33745; NICHD F32 HD08435-01; NHGRI F32 HG00215-01 |
Acknowledgement requested | nif-0000-10300 | http://purl.bioontology.org/ontology/MA | SCR_006568 | Adult Mouse Anatomy Browser, MGI Adult Mouse Anatomical Dictionary Browser, Adult Mouse Anatomical Dictionary Browser, Mouse Adult Gross Anatomy Ontology, Anatomical Dictionary for the Adult Mouse | 2026-07-27 09:32:35 | 3 | |||||
|
Breast Cancer Grading Ontology Resource Report Resource Website |
Breast Cancer Grading Ontology (RRID:SCR_006658) | BCGO | controlled vocabulary, ontology, data or information resource | Ontology that assigns a grade to a tumor starting from the 3 criteria of the NGS | owl | is listed by: BioPortal | Breast Cancer | nlx_157343 | SCR_006658 | 2026-07-27 09:32:37 | 0 | ||||||||
|
Sleep Domain Ontology Resource Report Resource Website |
Sleep Domain Ontology (RRID:SCR_006808) | SDO | controlled vocabulary, ontology, data or information resource | An application ontology for the domain of Sleep Medicine. | owl | is listed by: BioPortal | nlx_157590 | SCR_006808 | 2026-07-27 09:32:39 | 0 | |||||||||
|
Nursing Interventions Classification Resource Report Resource Website |
Nursing Interventions Classification (RRID:SCR_000911) | NIC | controlled vocabulary, ontology, data or information resource | Ontology of nursing interventions classification. | umls | is listed by: BioPortal | nlx_157512 | SCR_000911 | 2026-07-27 09:31:04 | 0 | |||||||||
|
International Classification of Primary Care - 2 PLUS Resource Report Resource Website |
International Classification of Primary Care - 2 PLUS (RRID:SCR_000909) | ICPC2P | controlled vocabulary, ontology, data or information resource | Ontology of the international classification of primary care -2 PLUS | umls | is listed by: BioPortal | nlx_157454 | SCR_000909 | 2026-07-27 09:31:04 | 0 | |||||||||
|
Synthetic Biology Open Language Visual Ontology Resource Report Resource Website |
Synthetic Biology Open Language Visual Ontology (RRID:SCR_001261) | SBOL | controlled vocabulary, ontology, data or information resource | Ontology to represent standardized graphical notation for synthetic biology. | obo | is listed by: BioPortal | Free, Available for download, Freely available | nlx_157601 | SCR_001261 | 2026-07-27 09:31:09 | 0 | ||||||||
|
Teleost Taxonomy Ontology Resource Report Resource Website |
Teleost Taxonomy Ontology (RRID:SCR_001611) | TTO | controlled vocabulary, ontology, data or information resource | An ontology of taxonomic terms (names of taxonomic groups) used in the systematics of fish, including non-teleost groups such as Chondrichthys (sharks and rays), Sarcopterygii (lungfish and coelacanths), lampreys, and hagfish. It contains (as of August 2010) over 38,500 names, and over 44,000 taxonomic synonyms. A majority of the taxonomic names and synonyms were made available from the Catalog of Fishes. In July 2010 they added nearly 15,000 common names provided by Fishbase. Additional names and synonyms are added as a result of their curation activities. The ontology is being used to facilitate annotation of phenotypes, particularly for taxa that are not covered by NCBI because no submissions of molecular data have been made. Taxonomy ontologies can also be valuable in annotating legacy data, where authors make phenotype or ecological assertions (e.g., host-parasite associations) that refer to groups that are reorganized or no longer recognized. The taxonomy ontology serves as the source of taxa for their project's use for identifying evolutionary changes that match the phenotype of a zebrafish mutant. | taxonomy, term, name, group, fish, phenotype, obo |
is used by: Vertebrate Taxonomy Ontology is listed by: BioPortal is related to: Catalog of Fishes is related to: FishBase has parent organization: Phenoscape Knowledgebase |
Free, Freely available | nlx_153877 | https://www.nescent.org/phenoscape/ | SCR_001611 | 2026-07-27 09:31:15 | 0 | |||||||
|
MGED Ontology Resource Report Resource Website 1+ mentions |
MGED Ontology (RRID:SCR_004484) | MO | controlled vocabulary, ontology, data or information resource | An ontology including concepts, definitions, terms, and resources for a standardized description of a microarray experiment in support of MAGE v.1. The MGED ontology is divided into the MGED Core ontology which is intended to be stable and in synch with MAGE v.1; and the MGED Extended ontology which adds further associations and classes not found in MAGE v.1. These terms will enable structure queries of elements of the experiments. Furthermore, the terms will also enable unambiguous descriptions of how the experiment was performed. | microarray, biomaterial, treatment, mage, owl |
is listed by: BioPortal is related to: MIAME is related to: MIAME is related to: RNA Abundance Database has parent organization: Functional Genomics Data Society has parent organization: SourceForge |
NIBIB ; NHGRI P41HG003619 |
PMID:16428806 | nlx_47223 | http://purl.bioontology.org/ontology/MO | SCR_004484 | Microarray and Gene Expression Data Ontology | 2026-07-27 09:32:02 | 1 | |||||
|
PhenX Phenotypic Terms Resource Report Resource Website |
PhenX Phenotypic Terms (RRID:SCR_004518) | PHENX | controlled vocabulary, ontology, data or information resource | Ontology for standard measures related to complex diseases, phenotypic traits and environmental exposures | owl |
is listed by: BioPortal has parent organization: Consensus Measures for Phenotype and Exposure is organization facet of: Phenotypes and eXposures Toolkit |
nlx_157548 | SCR_004518 | 2026-07-27 09:32:03 | 0 | |||||||||
|
Ontology of Pneumology Resource Report Resource Website |
Ontology of Pneumology (RRID:SCR_004378) | ONTOPNEUMO | controlled vocabulary, ontology, data or information resource | Ontology of pneumology (french version) developped by Audrey Baneyx, under the direction of Jean Charlet about knowledge engineering expertise and by Francois-Xavier Blanc in collaboration with Bruno Housset about medical expertise. | owl | is listed by: BioPortal | Creative Commons Attribution-NonCommercial-NoDerivs License, v2 UK | nlx_157537 | SCR_004378 | 2026-07-27 09:32:00 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the PRECISE-TBI Resources search. From here you can search through a compilation of resources used by PRECISE-TBI and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that PRECISE-TBI has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on PRECISE-TBI then you can log in from here to get additional features in PRECISE-TBI such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into PRECISE-TBI you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
