Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Alzheimer's Association International Research Grant Program Resource Report Resource Website 1+ mentions |
Alzheimer's Association International Research Grant Program (RRID:SCR_008775) | funding resource | An organization that funds research for Alzheimer's disease, provides information on new treatment strategies, provides information on caring for afflicted people, and generally increases public knowledge of disease prevention. This program financially supports new Alzheimer's studies. These research projects are selected by the Medical and Scientific Advisory Council. The council chooses which studies to address based on their potential uses in diagnostics, genetics, treatments, prevention, early detection and general enhancement of lifestyle. | alzheimer's disease, grant, research funding, alzheimer's prevention, funding resource | has parent organization: Alzheimers Association | Available to researchers | nlx_144113 | SCR_008775 | Alzheimer's Association Grants, Alzheimer's Association International Research Grant Program | 2026-08-01 12:03:53 | 1 | ||||||||
|
McKnight Foundation Resource Report Resource Website 10+ mentions |
McKnight Foundation (RRID:SCR_008776) | McKnightFdn | institution | An endowment that offers funding for neuroscience research, especially as it may apply to Minnesota, agriculture, or if the researchers are based in Minnesota. The McKnight Foundation, a Minnesota-based family foundation, seeks to improve the quality of life for present and future generations through grantmaking, collaboration, and strategic policy reform in the following areas: arts, education and learning, environment, the region and communities, agricultural research, and neuroscience research. The McKnight Foundation assists nonprofit organizations and public agencies to improve the quality of life for all people, particularly those in need. Through grantmaking, coalition-building, and encouragement of strategic policy reform, we aim to build and maintain vibrant communities; enrich people''s lives through the arts; encourage protection of the natural environment; and promote research in selected fields. The Foundation had assets of approximately $1.8 billion and gave about $98 million in grants in 2009. Generally speaking, McKnight supports nonprofit organizations in Minnesota, U.S., only. McKnight''s primary geographic focus in grantmaking is to nonprofit organizations located within the state of Minnesota. We do not provide funding outside Minnesota, with five important programmatic exceptions: * Collaborative Crop research: International. * East Africa: Tanzania and Uganda only. * Mississippi River: 10 states bordering or encompassing the Mississippi River. * Neuroscience research: National. * Southeast Asia: Cambodia, Laos, and Vietnam only. Each program is different. Please consult the specific guidelines appropriate to your project or organization for funding details. With very few exceptions, McKnight funds nonprofit organizations only. To be eligible for a grant, applicants must be classified by the Internal Revenue Service as tax-exempt, nonprofit organizations. We discourage the use of fiscal agents. | grant, art, education, learning, environment, region, community, agricultural, research, neuroscience, international, minnesota | is parent organization of: McKnight Endowment Fund for Neuroscience | grid.453258.d, Crossref funder ID: 100005270, nlx_144128 | https://ror.org/003ghvj67 | http://www.mcknight.org/index.aspx | SCR_008776 | The McKnight Foundation | 2026-08-01 12:03:37 | 11 | ||||||
|
McKnight Endowment Fund for Neuroscience Resource Report Resource Website 1+ mentions |
McKnight Endowment Fund for Neuroscience (RRID:SCR_008771) | McKnight Endowment Fund for Neuroscience | funding resource | An endowment that offers funding for memory research. The McKnight Endowment Fund for Neuroscience is an independent charitable organization established by The McKnight Foundation to carry out the wishes of its founder, William L. McKnight (1887-1979). Currently, the Endowment Fund for Neuroscience administers four awards which support young and established neuroscientists and encourage interdisciplinary collaboration: * Memory and Cognitive Disorders Awards * Neuroscience of Brain Disorders Awards * Scholar Awards * Technological Innovations in Neuroscience Awards Mr. McKnight, who led the 3M company for three decades, had a personal interest in memory and its diseases. He chose to set aside part of his legacy to bring hope to those suffering from brain injury or disease and cognitive impairment. | award, neuroscience, brain injury, brain, memory, cognitive impairment | has parent organization: McKnight Foundation | nlx_144129 | SCR_008771 | 2026-08-01 12:03:52 | 1 | |||||||||
|
PASTA Resource Report Resource Website 10+ mentions |
PASTA (RRID:SCR_008770) | PASTA | software resource | A complete pipeline for the analysis of alternative splicing using RNA-Sequencing data. |
is listed by: OMICtools has parent organization: University of Florida; Florida; USA |
OMICS_01247 | SCR_008770 | Patterned Alignments for Splicing and Transcriptome Analysis | 2026-08-01 12:04:02 | 14 | |||||||||
|
QPALMA Resource Report Resource Website 1+ mentions |
QPALMA (RRID:SCR_008791) | QPALMA | software resource | An alignment tool targeted to align spliced reads produced by Next Generation sequencing platforms such as Illumina Solexa or 454. | is listed by: OMICtools | OMICS_01248 | SCR_008791 | QPALMA: Optimal Spliced Alignments of Short Sequence Reads | 2026-08-01 12:03:53 | 1 | |||||||||
|
Sequgio Resource Report Resource Website |
Sequgio (RRID:SCR_008867) | Sequgio | software resource | An algorithm to estimate isoforms expression from RNA-seq data based on a model that doesn''t assume uniform distribution of count within transcripts. | is listed by: OMICtools | PMID:24307704 | OMICS_01290 | SCR_008867 | 2026-08-01 12:03:55 | 0 | |||||||||
|
Central Brain Tumor Registry of the United States Resource Report Resource Website 10+ mentions |
Central Brain Tumor Registry of the United States (RRID:SCR_008748) | CBTRUS | nonprofit organization | Voluntary, non-profit organization dedicated to collecting and disseminating statistical data. Resource for gathering and disseminating epidemiologic data on all primary benign and malignant brain and other CNS tumors. | human, brain, tumor, cancer, central nervous system, epidemiology, incidence, survival, diagnosis, treatment, benign, malignant, registry, epidemiological data, aggregator, clinical, statistics, population, histology, age, gender, race, hispanic, mortality | Brain tumor, Aging | American Brain Tumor Association ; National Brain Tumor Society ; Pediatric Brain Tumor Foundation ; NCI contract HHSN261201000576P |
PMID:23095881 | Application required., The community can contribute to this resource | grid.492337.8, ISNI: 0000 0004 0484 2205, nlx_143889 | https://ror.org/03849s113 | SCR_008748 | 2026-08-01 12:03:52 | 26 | |||||
|
CBioC Resource Report Resource Website 1+ mentions |
CBioC (RRID:SCR_008863) | CBioC | software resource | A tool for extraction and collaboration for data curation related to biology. CBioC runs as a web browser extension and allows unobtrusive use of the system during the regular course of research in PubMed. It can also be accessed directly (without having to install a plug-in). Automated text extraction is used as a starting point to bootstrap the database, but then it is up to biologists improve upon the extracted data, ironing out inconsistencies by subsequent edits on a massive scale. * After install, it loads when you visit PubMed. * Gets interactions from PubMed abstracts. * Allows you to vote and modify extracted data. * Also shows data from BIND, DIP, MINT, GRID, IntAct. | text extraction, curation, crowd sourcing |
is listed by: 3DVC is related to: PubMed has parent organization: Arizona State University; Arizona; USA |
Arizona State University 0412000 | PMID:17951840 | nlx_149235 | SCR_008863 | CBioC - Collaboratively uncovering the nuggets of knowledge buried in millions of biomedical texts, Collaborative Bio Curation | 2026-08-01 12:03:39 | 1 | ||||||
|
Nature Publishing Group Resource Report Resource Website 1+ mentions |
Nature Publishing Group (RRID:SCR_008741) | NPG | commercial organization | Nature Publishing Group (NPG) is a publisher of high impact scientific and medical information in print and online. NPG publishes journals, online databases and services across the life, physical, chemical and applied sciences and clinical medicine. Focusing on the needs of scientists, Nature (founded in 1869) is the leading weekly, international scientific journal. In addition, for this audience, NPG publishes the Nature research journals and Nature Reviews journals, plus a range of prestigious academic journals including society-owned publications. Online, nature.com provides over 6 million visitors per month with access to NPG publications and online databases and services, including news and comment from Nature, NatureJobs plus access to Nature Network and Nature Education''s Scitable.com. Scientific American is at the heart of NPG''s newly-formed consumer media division, meeting the needs of the general public. Founded in 1845, Scientific American is the oldest continuously published magazine in the US and the leading authoritative publication for science in the general media. Together with scientificamerican.com and 16 local language editions around the world it reaches over 3 million consumers and scientists. Other titles include Scientific American Mind and Spektrum der Wissenschaft in Germany. Scientific American is available for site license access on the nature.com platform. Throughout all its businesses NPG is dedicated to serving the scientific and medical communities and the wider scientifically interested general public. Part of Macmillan Publishers Limited, NPG is a global company with principal offices in London, New York and Tokyo, and offices in cities worldwide including Boston, Buenos Aires, Delhi, Hong Kong, Madrid, Barcelona, Munich, Heidelberg, Basingstoke, Melbourne, Paris, San Francisco, Seoul and Washington DC. Read our history for a timeline of NPG and the scientific events which have helped shape the direction of the business. | publishing, science, medicine, clinical medicine |
is affiliated with: SourceData is related to: Antibodypedia is parent organization of: NextGenSeq(at)nature.com is parent organization of: Journal of Cerebral Blood Flow and Metabolism is parent organization of: Nature Online Video Streaming Archive is parent organization of: Naturejobs is parent organization of: nature.com blogs is parent organization of: Nature Network is parent organization of: Protocol Exchange is parent organization of: Nature Precedings is parent organization of: Functional Glycomics Research |
nlx_143840 | SCR_008741 | npg: nature publishing group | 2026-08-01 12:04:01 | 1 | ||||||||
|
YunBe Resource Report Resource Website |
YunBe (RRID:SCR_008740) | YunBe | software resource | A gene set analysis algorithm for biomarker identification in the cloud. | mapreduce/hadoop | is listed by: OMICtools | PMID:22084254 | OMICS_01227 | SCR_008740 | 2026-08-01 12:03:36 | 0 | ||||||||
|
DIAMOND Resource Report Resource Website 1000+ mentions |
DIAMOND (RRID:SCR_009457) | DIAMOND | software resource | Software to: view dicom files and assemble them into 3D volumes. View and convert between Analyze, Nifti, and Interfile. Classify and organize dicoms and 3D volumes using metadata. Search and report on a collection of scans. | reusable library, analyze, database application, dicom, format conversion, image display, image reconstruction, magnetic resonance, nifti, python, software, visualization, workflow, FASEB list |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of California at Davis; California; USA |
nlx_155603 | SCR_009457 | UC Davis IDeA Lab Applications for Management Of Neuroimaging Data | 2026-08-01 12:03:42 | 4152 | ||||||||
|
CBS High-Res Brain Processing Tools Resource Report Resource Website 10+ mentions |
CBS High-Res Brain Processing Tools (RRID:SCR_009452) | CBS High-Res Brain Processing Tools | software resource | A fully automated processing pipeline for cortical analysis of structural MR images at a resolution of up to 400������m, including skull stripping, whole brain segmentation, cortical extraction, surface inflation and mapping, as well as dedicated tools for profile estimation across the cortical thickness. The tools are released as a set of plug-ins for the MIPAV software package and the JIST pipeline environment. They are therefore cross-platform and compatible with a wide variety of file formats. | magnetic resonance |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: JIST: Java Image Science Toolkit is related to: MIPAV: Medical Image Processing and Visualization |
Free | nlx_155596 | SCR_009452 | 2026-08-01 12:03:59 | 20 | ||||||||
|
FGDP Resource Report Resource Website |
FGDP (RRID:SCR_008910) | FGDP | software resource | A Java-based, Microarray or Genechip data analysis system. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Fox Chase Cancer Center |
PMID:14734324 | GNU General Public License | OMICS_00756, biotools:fgdp | https://bio.tools/fgdp | SCR_008910 | Functional Genomics Data Pipeline (FGDP), Functional Genomics Data Pipeline | 2026-08-01 12:04:06 | 0 | |||||
|
elk-reasoner Resource Report Resource Website |
elk-reasoner (RRID:SCR_008913) | ELK | software resource | ELK is an ontology reasoner with the goal of supporting the OWL 2 EL profile. ELK is a specialized reasoner for the lightweight ontology language OWL EL. The practical utility of ELK is in its combination of high performance and comprehensive support for language features. At its core, ELK employs a consequence-based reasoning engine that can take advantage of multi-core and multi-processor systems. A modular architecture allows ELK to be used as a stand-alone application, Protege plug-in, or programming library (either with or without the OWL API). | owl ontology reasoning el, owl, ontology, semantic web, reasoner, description logic, reasoner, ontology reasoner, owl el |
is listed by: Gene Ontology Tools has parent organization: University of Oxford; Oxford; United Kingdom has parent organization: Ulm University; Baden-Wurttemberg; Germany |
EPSRC EP/G02085X/1 | Open unspecified license, Apache License v2 | nlx_151493 | SCR_008913 | ELK Reasoner | 2026-08-01 12:03:39 | 0 | ||||||
|
Biomatik Resource Report Resource Website 500+ mentions |
Biomatik (RRID:SCR_008944) | Biomatik | commercial organization | An Antibody supplier, Core facility | is listed by: ScienceExchange | nlx_152303, SciEx_8952 | SCR_008944 | 2026-08-01 12:03:56 | 869 | ||||||||||
|
Beckman Coulter Resource Report Resource Website 100+ mentions |
Beckman Coulter (RRID:SCR_008940) | commercial organization | An Organization portal, Material service resource, Antibody supplier, Instrument supplier | biotechnology, diagnostic, life science, biomedical, testing, analyzer, immunochemistry, dna analysis, flow cytometer |
is related to: ONE Study is parent organization of: Diagnostic Systems Laboratories |
nlx_152293 | SCR_008940 | Beckman Coulter Inc. | 2026-08-01 12:04:07 | 154 | |||||||||
|
A sample size calculation method Resource Report Resource Website |
A sample size calculation method (RRID:SCR_009469) | A sample size calculation method | software resource | Sample size calculation based on exact test for assessing differential expression analysis in RNA-seq data. R code is available from the corresponding author. | is listed by: OMICtools | PMID:24314022 | OMICS_01228 | SCR_009469 | 2026-08-01 12:04:09 | 0 | |||||||||
|
NGC Resource Report Resource Website |
NGC (RRID:SCR_009342) | NGC | software resource | A compressor for aligned HTS sequencing data that enables the complete lossless and lossy compression of mapped alignment data stored in SAM/BAM files. | is listed by: OMICtools | PMID:23066097 | OMICS_00964 | SCR_009342 | 2026-08-01 12:04:09 | 0 | |||||||||
|
AMERICAN DIAGNOSTICA Resource Report Resource Website |
AMERICAN DIAGNOSTICA (RRID:SCR_008928) | commercial organization | An Antibody supplier. | nlx_152266 | http://american-diagnostica.de, https://sekisuidxcoag.com/ | SCR_008928 | Sekisu | 2026-08-01 12:04:07 | 0 | ||||||||||
|
Pharmacology Resource Report Resource Website 100+ mentions |
Pharmacology (RRID:SCR_009017) | book, narrative resource, data or information resource, wiki | Pharmacology is a wikibook covering topics within pharmacology and pharmaceutical sciences. | has parent organization: Wikibooks | nlx_152817 | SCR_009017 | Pharmacology (wikibook) | 2026-08-01 12:03:41 | 142 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the PRECISE-TBI Resources search. From here you can search through a compilation of resources used by PRECISE-TBI and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that PRECISE-TBI has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on PRECISE-TBI then you can log in from here to get additional features in PRECISE-TBI such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into PRECISE-TBI you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
