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http://protein.ict.ac.cn/FALCON/
Web tool as high throughput protein structure prediction service. High throughput server for protein structure prediction.
Proper citation: FALCON (RRID:SCR_018804) Copy
https://somapp.ucdmc.ucdavis.edu/pharmacology/bers/maxchelator/webmaxc/webmaxcE.htm
Web tool for computing metal ion concentrations in physiological solutions. Used for determining free metal concentration in presence of chelators or total metal given desired free concentration.
Proper citation: WEBMAXC EXTENDED (RRID:SCR_018807) Copy
https://rippleneuro.com/ripple-products/grapevine-processors/
Interface processor as 512 channel stimulation and recording electrophysiology tool. Designed to be safe for human subjects.
Proper citation: Ripple Neuro: Grapevine Neural Interface Processor (RRID:SCR_018897) Copy
Web prediction tool for molecular binding in simulation of immune system. Agent based simulator of immune response that represents pathogens, as well as lymphocytes receptors, by means of their amino acid sequences and makes use of bioinformatics methods for T and B cell epitope prediction.Calculates immune response to generic pathogenic secondary structure. Allows users to submit antigen protein sequence and specify schedule of its injection as well as host haplotype.
Proper citation: C-IMMSIM (RRID:SCR_018775) Copy
Software experimental data table management system to make research data accessible and available for reuse with minimal effort on part of data provider. Allows any scientist or data researcher to be able to explore dataset and then extract some or all of data according to their needs. Designed to manage experimental data tables in quick and easy way for users.
Proper citation: ODAM (RRID:SCR_018774) Copy
https://www.leica-microsystems.com/products/light-microscopes/p/leica-dm4000-b/
Fluorescent microscope which supports fluorescence contrast techniques. This product is archived and has been replaced by the Leica DM4000 B LED.
Proper citation: Leica: DM4000 B Microscope (RRID:SCR_018895) Copy
https://millar.com/Research/PressureVolume-Loop-System/
Pressure volume loop system with seven available volume segments, range of gain settings, integrated internal ECG circuit and dual pressure amplifiers. System can be used in either large or small animal subjects, depending on which size catheter is used.
Proper citation: Millar: MPVS Ultra Pressure Volume Loop System (RRID:SCR_018894) Copy
https://github.com/aplbrain/saber
Library of containerized tools and workflow deployment system for enabling processing of large neuroimaging datasets. Provides canonical neuroimaging workflows specified in standard workflow language (CWL), integration with workflow execution engine (Airflow), imaging database (bossDB), and parameter database (Datajoint) to deploy workflows at scale, and tools to automate deployment and optimization of neuroimaging pipelines.
Proper citation: Scalable Analytics for Brain Exploration Research (RRID:SCR_018812) Copy
https://npsa-prabi.ibcp.fr/cgi-bin/npsa_automat.pl?page=/NPSA/npsa_phd.html
Web tool for secondary structure prediction. Used for network protein sequence analysis.
Proper citation: PHD SECONDARY STRUCTURE (RRID:SCR_018778) Copy
https://github.com/biocatiit/musclex
Software suite as collection of programs intended to assist with analyzing diffraction X-ray images. MuscleX diffraction X-ray image analyzing toolkit. Data reduction software for X-ray fiber diffraction data.
Proper citation: Muscle X (RRID:SCR_018811) Copy
http://www.genscript.com/psort/psort2.html
Web tool for prediction of protein sorting signals and localization sites in amino acid sequencies. Recommended for animal/yeast sequences. Analyzes input sequence by applying stored rules for various sequence features of known protein sorting signals to report possiblity for input protein to be localized at each candidate site with additional information.
Proper citation: PSORT II (RRID:SCR_018772) Copy
https://www.beckman.com/flow-cytometry/instruments/moflo-astrios-eq
High speed flow cytometry sorter.
Proper citation: Beckman Coulter: Life Sciences MoFlo Astrios EQ Cell Sorter (RRID:SCR_018893) Copy
https://github.com/chris-mcginnis-ucsf/DoubletFinder
Software R package that predicts doublets in single cell RNA sequencing data. Doublet detection in single cell RNA sequencing data using artificial nearest neighbors. Identifies doublets using only gene expression data.
Proper citation: DoubletFinder (RRID:SCR_018771) Copy
https://plexon.com/products/plexon-v-probe/
Linear electrode array used for intracranial electrophysiological recordings. V-Probe is multi-use, multi-site, linear electrode with recording sites positioned on side of sharpened, symmetric cone by Plexon Inc. Minimizes trauma to brain tissue upon insertion. Durable, highly customizable, and often used in acute research with medium to large animals.
Proper citation: Plexon: 16 channel V-Probe (RRID:SCR_018784) Copy
Website for study pre-registration. Defines minimum required criteria for pre-registration and allows authors to pre-register their study. It is standardized pre-registration that requires only what is necessary to separate exploratory from confirmatory analyses.
Proper citation: AsPredicted (RRID:SCR_018789) Copy
https://plexon.com/products/headstages/
Headstage that attaches to 16-channel linear electrode arrays by Plexon Inc. Digitizes analog voltage signals and outputs them to data acquisition systems.
Proper citation: Plexon: 16-channel digital headstage (RRID:SCR_018783) Copy
http://crdd.osdd.net/raghava/algpred/
Web tool for prediction of allergens based on similarity of known epitope with any region of protein. Used for prediction of allergenic proteins and mapping of IgE epitopes.
Proper citation: AlgPred (RRID:SCR_018780) Copy
Functional gene pipeline and repository. Functional gene repository provides collections of genes in interactive platform, while functional gene pipeline offers suite of tools for functional gene amplicon processing and analysis. Together they enable key steps in functional gene based microbial community analysis, from target selection and primer analysis to amplicon processing and ecological discovery.
Proper citation: FunGene (RRID:SCR_018749) Copy
Software tool to construct 3D models of soft tissue using CT-like cross sectional imaging.
Proper citation: syngo DynaCT (RRID:SCR_018902) Copy
Web service that conducts comprehensive literature mining to identify roles of genes in addiction. Searches PubMed to find abstracts containing genes of interest and list of curated addiction related keywords.
Proper citation: RatsPub (RRID:SCR_018905) Copy
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