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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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American Tissue Services Foundation - ATSF Resource Report Resource Website |
American Tissue Services Foundation - ATSF (RRID:SCR_000549) | ATSF | biomaterial supply resource, material resource | A non-profit organization that facilitates the donation of tissues. It supports healthcare agencies, coroners, medical examiners and funeral professionals through donations and training, as well as partnering with organizations that utilize tissue in medical care and research. | tissue, donation, healthcare, medicine, research | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_97074 | SCR_000549 | American Tissue Services Foundation | 2026-08-01 12:10:30 | 0 | ||||||||
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MUSC Health News Resource Report Resource Website |
MUSC Health News (RRID:SCR_000580) | MUSC Health News | narrative resource, data or information resource | MUSC's Health News RSS Feeds includes topic of a interest you can subscribe to by copying the corresponding URL into your preferred RSS software. You will automatically receive this feed each time it's published. Topics include: Brain Waves, Diabetes Health, Kids Health, Heart Care, Men's Health, Women's Health, and Community Blog. | health, news | has parent organization: Medical University of South Carolina; South Carolina; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144508 | SCR_000580 | MUSC Health News RSS Feeds, Medical University of South Carolina Health News | 2026-08-01 12:10:31 | 0 | |||||||
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PRACSIS - Prognosis and Risk in Acute Coronary Syndromes In Sweden Resource Report Resource Website |
PRACSIS - Prognosis and Risk in Acute Coronary Syndromes In Sweden (RRID:SCR_000615) | PRACSIS | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. PRACSIS (Prognosis and Risk in Acute Coronary Syndromes In Sweden) aims to study prognosis and its predictors in a consecutive series of patients with acute coronary syndrome (ACS). The study is comprised of patients between 18 and 80 years diagnosed at the coronary care unit at the Sahlgrenska University Hospital with unstable angina, non-ST-elevation MI or ST-elevation MI. Extensive information on medical history and blood samples for analyses of biochemical markers and genetic factors have been collected. | cardiac disease, predictor, prognosis, medical history, biochemical marker, genetic factor, biomarker, gene, genetics, adult |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Karolisnka Biobank |
Acute coronary syndrome | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_151442 | SCR_000615 | PRACSIS - Prognosis Risk in Acute Coronary Syndromes In Sweden, Prognosis and Risk in Acute Coronary Syndromes In Sweden, KI Biobank - PRACSIS | 2026-08-01 12:10:42 | 0 | ||||||
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NIH Toolbox Words-in Noise Test Resource Report Resource Website |
NIH Toolbox Words-in Noise Test (RRID:SCR_000174) | WIN Test | material resource, assessment test provider | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Assessment test that measures how much difficulty a person might have hearing in a noisy environment. A recorded voice instructs the participant to listen to and then repeat words. The task becomes increasingly difficult as the background noise gets louder. This test was developed to measure a person's ability to recognize single words presented amid varying levels of background noise. Recommended for participants ages 6-85 and takes approximately six minutes to administer. | sensation, audition, hearing, ear, noise | has parent organization: NIH Toolbox - Assessment of Neurological and Behavioral Function | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157784 | SCR_000174 | NIH Toolbox Words-in Noise (WIN) Test | 2026-08-01 12:10:29 | 0 | |||||||
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NGS-Cleaner Resource Report Resource Website |
NGS-Cleaner (RRID:SCR_000574) | NGS-Cleaner | software resource, software application | Software application that provides cleaning of FASTQ/A formatted large DNA sequence files containing multiple short-reads sequences provided by Next Generation Sequencing platforms. | next-generation sequencing |
is listed by: OMICtools has parent organization: SourceForge |
Free, Available for download, Freely available, | OMICS_01166 | SCR_000574 | 2026-08-01 12:10:42 | 0 | ||||||||
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Buss-Perry Aggression Questionnaire Resource Report Resource Website |
Buss-Perry Aggression Questionnaire (RRID:SCR_000177) | AGQ | material resource, assessment test provider | A 29 item aggression assessment where participants rank certain statements along a 5 point continuum from "extremely uncharacteristic of me"to "extremely characteristic of me". The scores are normalized on a scale of 0 to 1, with 1 being the highest level of aggression. The questionnaire returns scores for 4 dimensions of aggression: Physical Aggression, Verbal Aggression, Anger, Hostility. | psychology, scale, aggression, assessment, questionnaire, physical aggression, verbal aggression, anger, hostility | Physical Aggression, Verbal Aggression, Anger, Hostility | Public, Non-Commercial | nlx_157852 | SCR_000177 | Aggression Questionnaire, Buss Perry Aggression Questionnaire | 2026-08-01 12:10:29 | 0 | |||||||
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Model: Hebbian Mirror Neuron System (H-MNS) (Keysers - Perrett) Resource Report Resource Website |
Model: Hebbian Mirror Neuron System (H-MNS) (Keysers - Perrett) (RRID:SCR_000608) | Model: H-MNS, H-MNS | narrative resource, data or information resource | A conceptual model of how Hebbian learning between the areas STS, PF, F5 allows recognition of the actions of others by associating them with self-produced actions. | conceptual, grasping, mirror neuron, neural region, area 7a, area 7b, f5, model | has parent organization: Brain Operation Database | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_149493 | http://nsl.usc.edu/bodb/model/903/ | SCR_000608 | Hebbian Mirror Neuron System, Model: Hebbian Mirror Neuron System | 2026-08-01 12:10:31 | 0 | ||||||
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PEDIGREE-VISUALIZER Resource Report Resource Website |
PEDIGREE-VISUALIZER (RRID:SCR_000842) | PEDIGREE-VISUALIZER | software resource, software application | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154521 | SCR_000842 | 2026-08-01 12:10:43 | 0 | |||||||||
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PEDPHASE Resource Report Resource Website |
PEDPHASE (RRID:SCR_000843) | PEDPHASE | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE.Documented on August 23,2022. Software application for inferring haplotypes from genotypes on pedigree data (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154525 | SCR_000843 | 2026-08-01 12:10:33 | 0 | ||||||||
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LOCUSMAP Resource Report Resource Website |
LOCUSMAP (RRID:SCR_000840) | LOCUSMAP | software resource, software application | Software package designed for rapid linkage analysis and map construction of loci with a variety of inheritance modes. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran 90/95, ms-windows, linux, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154434, biotools:locusmap | https://bio.tools/locusmap | SCR_000840 | 2026-08-01 12:10:33 | 0 | ||||||||
|
RHMAPPER Resource Report Resource Website |
RHMAPPER (RRID:SCR_000845) | RHMAPPER | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 30, 2022. An interactive software program for radiation hybrid mapping (entry from Genetic Analysis Software) | gene, genetic, genomic, perl | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154576 | SCR_000845 | 2026-08-01 12:10:43 | 0 | ||||||||
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Honey Bee Brain EST Project Resource Report Resource Website 1+ mentions |
Honey Bee Brain EST Project (RRID:SCR_002389) | Bee-ESTdb | biomaterial supply resource, material resource | A database integrating data from the bee brain EST sequencing project with data from sequencing and gene research projects from other organisms, primarily the fruit fly Drosophila melanogaster. The goal of Bee-ESTdb is to provide updated information on the genes of the honey bee, currently using annotation primarily from flies to suggest cellular roles, biological functions, and evolutionary relationships. The site allows searches by sequence ID, EST annotations, Gene Ontology terms, Contig ID and using BLAST. Very nice resource for those interested in comparative genomics of brain. A normalized unidirectional cDNA library was made in the laboratory of Prof. Bento Soares, University of Iowa. The library was subsequently subtracted. Over 20,000 cDNA clones were partially sequenced from the normalized and subtracted libraries at the Keck Center, resulting in 15,311 vector-trimmed, high-quality, sequences with an average read length of 494 bp. and average base-quality of 41. These sequences were assembled into 8966 putatively unique sequences, which were tested for similarity to sequences in the public databases with a variety of BLAST searches. The Clemson University Genomics Institute is the distributor of these public domain cDNA clones. For information on how to purchase an individual clone or the entire collection, please contact www.genome.clemson.edu/orders/ or generobi (at) life.uiuc.edu. | expressed sequence tag, brain, behavior, cdna, blast, gene, annotation, microarray, gene expression, comparative genomics, cdna clone, resource:genbank |
is listed by: One Mind Biospecimen Bank Listing is related to: One Mind Biospecimen Bank Listing is related to: Gene Ontology has parent organization: University of Illinois at Urbana-Champaign; Illinois; USA |
NSF ; University of Illinois Critical Research Initiatives Program ; Burroughs Wellcome Fund |
PMID:11932240 | Free | nif-0000-00118 | SCR_002389 | Honeybee EST Project | 2026-08-01 12:10:39 | 5 | |||||
|
GERMLINE Resource Report Resource Website 100+ mentions |
GERMLINE (RRID:SCR_001720) | GERMLINE | software resource, software application | Software application for discovering long shared segments of Identity by Descent (IBD) between pairs of individuals in a large population. It takes as input genotype or haplotype marker data for individuals (as well as an optional known pedigree) and generates a list of all pairwise segmental sharing., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, c++, linux, bio.tools |
is listed by: OMICtools is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian has parent organization: Columbia University; New York; USA |
PMID:18971310 | Free, Available for download, Freely available | biotools:germline, OMICS_00202, nlx_154080 | https://bio.tools/germline | http://www1.cs.columbia.edu/~gusev/germline/ | SCR_001720 | 2026-08-01 12:10:36 | 451 | |||||
|
OLORIN Resource Report Resource Website |
OLORIN (RRID:SCR_002015) | OLORIN | software resource, software application | An interactive filtering tool for next generation sequencing data coming from the study of large complex disease pedigrees. It integrates gene flow output from Merlin and next generation sequencing data. Users can interactively filter and prioritize variants based on haplotype sharing across different sets of selected individuals and allele frequency in reference datasets. (entry from Genetic Analysis Software) | gene, genetic, genomic, java, any platform with java 1.6 or later, next generation sequencing, variant, haplotype, allele frequency, java swing |
is listed by: OMICtools is listed by: Genetic Analysis Software has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom has parent organization: SourceForge |
PMID:23052039 | Free, Available for download, Freely available | nlx_154503, OMICS_01556 | http://sourceforge.net/p/olorin/ | SCR_002015 | 2026-08-01 12:10:38 | 0 | ||||||
|
SIMIBD Resource Report Resource Website |
SIMIBD (RRID:SCR_002094) | SIMIBD | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, (sunos/solaris/hp/dec-unix) | is listed by: Genetic Analysis Software | PMID:9002040 | Free, Available for download, Freely available | nlx_154622 | http://watson.hgen.pitt.edu/register/soft_doc.html, http://watson.hgen.pitt.edu/~davis/ | SCR_002094 | 2026-08-01 12:10:44 | 0 | ||||||
|
BREAKDANCER Resource Report Resource Website 100+ mentions |
BREAKDANCER (RRID:SCR_001799) | BreakDancer | software resource, software application | A Perl/C++ software package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. BreakDancerMax predicts five types of structural variants: insertions, deletions, inversions, inter- and intra-chromosomal translocations from next-generation short paired-end sequencing reads using read pairs that are mapped with unexpected separation distances or orientation. (entry from Genetic Analysis Software) | gene, genetic, genomic, perl, c++, next generation sequencing, structural variant, insertion, deletion, inversion, inter-chromosomal translocation, intra-chromosomal translocation, chromosomal translocation, indel, bio.tools |
is listed by: OMICtools is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian is listed by: SoftCite has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA |
PMID:19668202 | Free, Available for download, Freely available | biotools:breakdancer, nlx_154253, OMICS_00307 | https://bio.tools/breakdancer | SCR_001799 | 2026-08-01 12:10:37 | 370 | ||||||
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HAPLOPAINTER Resource Report Resource Website 10+ mentions |
HAPLOPAINTER (RRID:SCR_001710) | HaploPainter | software resource, software application | A pedigree drawing program, suitable in processing haplotype outputs from GENEHUNTER, ALLEGRO, MERLIN, and SIMWALK (entry from Genetic Analysis Software) | gene, genetic, genomic, perl, pedigree, haplotype, draw, bio.tools |
is listed by: OMICtools is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian has parent organization: SourceForge |
PMID:15377505 | Free, Freely Available | nlx_154062, OMICS_00209, biotools:haplopainter | https://bio.tools/haplopainter | http://haplopainter.sourceforge.net/html/ManualIndex.htm | SCR_001710 | 2026-08-01 12:10:32 | 45 | |||||
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GenomeSmasher Resource Report Resource Website |
GenomeSmasher (RRID:SCR_002406) | software resource, software application | Software repository for tools used to create diploid FASTA files with containing snps, indels, duplications, deletions, and translocations. They can be used to create artificial genomes for next-gen sequencing simulations. | fasta file creation, file creation, artificial genome creator, diploid fasta files, sequencing simulations |
is listed by: OMICtools is hosted by: Google Code |
Open source | OMICS_00251 | SCR_002406 | 2026-08-01 12:10:39 | 0 | |||||||||
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NIA Mouse cDNA Project Home Page Resource Report Resource Website 10+ mentions |
NIA Mouse cDNA Project Home Page (RRID:SCR_001472) | niaEST | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Project portal housing NIA Mouse EST Project, NIA Mouse cDNA Clone Sets, a NIA Mouse Gene Index, NIA Mouse cDNA Database, and NIA Mouse Microarrays. Characteristics of NIA 15K Mouse cDNA Clone Set * ~15,000 unique cDNA clones were rearrayed among 52,374 ESTs from pre- and periimplantation embryos, E12.5 female gonad/mesonephros, and newborn ovary. * Up to 50% are derived from novel genes. * ~1.5 kb average insert size. * Clones were sequenced from 5' and 3' termini to obtain longer reads and verify sequence. Sequence information is available at this Web Site. Clone names are from H3001A01 to H3159G07. * Handling of NIA 15k cDNA Clone Set(June3, 2000) Characteristics of NIA mouse 7.4K cDNA Clone Set * ~7407 cDNA clones with no redundancy within the set or with NIA Mouse 15K. * ~1.5 kb average insert size for short insert clones and ~2.5-3.0 kb average insert size for long-insert enriched clones.. * Clones were sequenced from 5' and 3' termini to obtain longer reads and verify sequence. Sequence information is available at this Web Site. Clone names are from H4001A01 to H4079G07. * Handling of NIA mouse 7.4k cDNA Clone Set (similar to handling of NIA mouse 15K, to be updated) Individual Clones are available from ATCC and MRC geneservice, UK. To obtain Clone, search the database using either the rearrayed clone name or GenBank accession number at the Key Word Search page. Follow the link to the sequence information page for the rearrayed clone to obtain source clone ATCC number. Clicking the ATCC number will bring up the ATCC ordering page for the source clone. There is essentially no overlap between the two clone sets (7.4K and 15K) said Minoru S.H. Ko, M.D., Ph.D., head of the Developmental Genomics and Aging Section in the NIA's Laboratory of Genetics. In addition, all cDNA clones in the NIA 7.4K set were purified by single colony isolation and sequence-verified, and more than half were prepared by a new procedure that yields long full-length cDNAs (average size 3-4 kb). The NIA Mouse 15k and 7.4k Clone Set Data and Published Microarray Data are available for download. NIA Mouse Microarrays *Microarray Data Download * 60-mer Oligo Array Platform ** (A) NIA 22k Oligo Microarray Gene List (21939 gene features) ( Carter et al 2003 ) ** (B) Agilent Mouse Development Oligo Microarray Gene List ** ( Subset of Microarray (A): 20,280 gene features ) * Data Analysis Tools | embryonic, expression, fetal, gene, cdna, cell, clone set, human disease, microarray, mouse, mouse model, newborn, stem cell, tissue, clone |
uses: ATCC is listed by: One Mind Biospecimen Bank Listing has parent organization: Intramural Research Program |
Aging | NIA 1ZIAAG000656-11 | PMID:14744099 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-09471 | SCR_001472 | NIA Mouse cDNA Project, Mouse cDNA Project | 2026-08-01 12:10:36 | 12 | ||||
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DicomWorks Resource Report Resource Website 1+ mentions |
DicomWorks (RRID:SCR_001195) | DicomWorks | software resource, software application | Software to help users work with DICOM files by organizing, managing and analyzing them. Key features: * a smart DICOM viewer with 4 panel display, annotations, arrows, multimodality synchronization, etc... * an export wizard to the most common picture or movie file formats * an export wizard to Microsoft PowerPoint * the most simple and compatible DICOM CD-ROM reader * the most simple and smart DICOM CD-ROM WRITER * an archiving solution with lossless compression of the data * a DICOM creation module to dicomize images from any image source (even video capture) * e-mail or FTP import end export functions (teleradiology) * 16 native localized versions | dicom, windows, radiology, image analysis, anonymization, protocol, export, powerpoint, surface analysis, visualization | is listed by: Biositemaps | PMID:17333414 PMID:18003565 |
Free | nif-0000-00288 | http://www.dicomworks.com | SCR_001195 | 2026-08-01 12:10:35 | 3 |
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