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URL: https://github.com/gagneurlab/scooby/
Proper Citation: Scooby (RRID:SCR_028110)
Description: Software aplication to predict scRNA-seq coverage and scATAC-seq insertion profiles along the genome at single-cell resolution. It leverages the pre-trained multi-omics profile predictor Borzoi as a foundation model, equips it with a cell-specific decoder, and fine-tunes its sequence embeddings.
Resource Type: software application, source code, software resource
Defining Citation: PMID:41125796
Keywords: convolutional neural networks, predict RNA-seq coverage, scATAC-seq insertion profiles, Borzoi, cell-specific decoder,
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