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URL: https://varscan.sourceforge.net/
Proper Citation: VarScan (RRID:SCR_006849)
Description: Platform-independent, technology-independent software tool for identifying SNPs and indels in massively parallel sequencing of individual and pooled samples. Given data for a single sample, VarScan identifies and filters germline variants based on read counts, base quality, and allele frequency. Given data for a tumor-normal pair, VarScan also determines the somatic status of each variant (Germline, Somatic, or LOH) by comparing read counts between samples. (entry from Genetic Analysis Software).
Abbreviations: VarScan, VarScan 2
Synonyms: Varscan2, VarScan - variant detection in massively parallel sequencing data, Varscan
Resource Type: software resource, software application
Defining Citation: PMID:22300766, PMID:19542151, DOI:10.1101/gr.129684.111
Keywords: gene, genetic, genomic, java, illumina, solid, life/pgm, roche/454, next-generation sequencing, variant, mutation caller, exome, whole-genome, snp, copy number alteration, somatic mutation, subclonal mutation, mutation, bio.tools
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