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URL: http://southgreen.fr/content/gigwa
Proper Citation: Gigwa (RRID:SCR_017080)
Description: Web tool to explore genotyping metdata by filtering it on basis of variant features, including functional annotations and matching genotype patterns. May be deployed on workstation or as data portal. Allows to feed MongoDB database with VCF, PLINK or HapMap files and provides interface to filter data in real time. Used to export filtered data into formats and features connectivity with online genomic tools and with standalone software such as FlapJack or IGV. Gigwa hosted datasets are interoperable via two standard REST APIs such GA4GH and BrAPI.
Synonyms: GIGWA, GIGWA2, Genotype Investigator for Genome Wide Analysis
Resource Type: analysis service resource, application programming interface, biomaterial analysis service, data access protocol, data analysis software, data distribution software, data management software, data processing software, material analysis service, production service resource, service resource, software application, software resource, web service
Defining Citation: PMID:27267926
Keywords: metadata, genotyping, filter, variant, functional, annotation, pattern, bio.tools
Funding: UMR DIADE and Agropolis Fundation
Availability: Free, Freely available
Resource Name: Gigwa
Resource ID: SCR_017080
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
