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URL: http://www.bioconductor.org/packages/release/bioc/html/Basic4Cseq.html
Proper Citation: Basic4Cseq (RRID:SCR_002836)
Description: An R/Bioconductor package for basic filtering, analysis and subsequent near-cis visualization of 4C-seq data. Virtual fragment libraries can be created for any BSGenome package, and filter functions for both reads and fragments and basic quality controls are included. Fragment data in the vicinity of the experiment's viewpoint can be visualized as a coverage plot based on a running median approach and a multi-scale contact profile.
Synonyms: Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data
Resource Type: software resource
Defining Citation: PMID:25078398
Keywords: software package, unix/linux, mac os x, windows, r, quality control, visualization
Availability: Free, Freely available, Available for download
Resource Name: Basic4Cseq
Resource ID: SCR_002836
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
