Curator Dashboard

Software package for robust identification of somatic mutations in acute myeloid leukemia using RNA-sequencing. Detects clinically important somatic mutations from RNA-seq data on relatively small gene panel (typically less than 100 genes).

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• RRID
• 1 year ago - by Anonymous

Software package to automate analysis of evolutionary trajectories over time of series of sequences from same viral infection. Snakemake workflow for SARS-CoV-2 viral intra-patient evolution reporting and analysis.

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• RRID
• 1 year ago - by Anonymous

Automated cell counter was developed using advanced machine-learning image analysis algorithm to deliver accurate cell counts and viability measurements using slide containing cell sample in fewer than 30 seconds. Has automated lighting, focus, capturing, counting, and saving.

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• RRID
• 1 year ago - submitted by Dongjun Han

Design and analysis software enables user to set up runs, send plates to the specific instrument, open completed run files, and analyze and review data in integrated and streamlined fashion. Software can be run with security, audit, and e-signature (SAE) enabled. The software also provides suite of analysis modules for secondary analysis and comes with multi-language support.

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• RRID
• 1 year ago - submitted by Dongjun Han

Software suite of algorithms used for arranging and visualizing graph structures. They provide variety of layout styles, such as hierarchical, organic, tree, circular, and orthogonal, each optimizing for different criteria and visualization needs.

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• RRID
• 1 year ago - submitted by Dongjun Han

Software ancient DNA relatedness pipeline for ultra-low coverage whole genome shotgun data.

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• RRID
• 1 year ago - by Anonymous

Software Python3 tool for advanced, user-friendly detection and nuanced analysis of biological relatedness from ancient DNA samples in archaeogenomics. Can classify up to third-degree relatedness and differentiate between two types of first-degree relatedness, full siblings and parent-offspring.

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• RRID
• 1 year ago - by Anonymous

Software tool to infer family relationships for degraded samples. Used to infer degree of relationship (up to second degree, i.e. nephew/niece-uncle/aunt, grandparent-grandchild or half-siblings) for pair of low-coverage individuals.

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• RRID
• 1 year ago - by Anonymous

Software tool to simulate pedigree structures. Used for simulating relatives that can utilize either sex-specific or sex averaged genetic maps and also either model of crossover interference or traditional Poisson model for inter-crossover distances.

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• RRID
• 1 year ago - by Anonymous

Software framework for analyzing low-depth next-generation sequencing data in heterogeneous/structured populations using principal component analysis.

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• RRID
• 1 year ago - by Anonymous

Software tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias. Used to identify identity-by-descent fragments and to estimate degree of relatedness from ancient DNA data.

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• RRID
• 1 year ago - by Anonymous

Ancient DNA genetic relatedness estimation software relying on pedigree simulations. Used to compute estimate of relatedness from randomly sampled pseudo-haploidized variant calls, and leverages high-definition pedigree simulations to bypass the use of cohort of individuals.

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• RRID
• 1 year ago - by Anonymous

Software sequence simulator for ancient DNA. For ancient hominin samples can also simulate various levels of present-day human contamination and microbial contamination.

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• RRID
• 1 year ago - by Anonymous

Software for Kinship coefficient estimation from low coverage ancient (or degraded forensic) genome data. Used to infer relatedness up to the 4th degree from low-coverage ancient human genomes.

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• RRID
• 1 year ago - by Anonymous

Software package provides Bayesian shrinkage estimators for effect sizes for variety of GLM models, using approximation of posterior for individual coefficients.

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• RRID
• 1 year ago - submitted by Dongjun Han

Software R package to generate Venn diagram.'ggplot2' implement of Venn Diagram.

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• RRID
• 1 year ago - submitted by Dongjun Han

Software package that provides client interface to Kyoto Encyclopedia of Genes and Genomes (KEGG) REST API. Client-side REST access to KEGG.

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• RRID
• 1 year ago - submitted by Dongjun Han

Ubuntu terminal environment on Windows with Windows Subsystem for Linux (WSL). Used to streamline web application development, leverage cutting-edge AI/ML tooling, develop cross-platform applications and manage IT infrastructure without leaving Windows.

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• RRID
• 1 year ago - submitted by Dongjun Han

Windows Subsystem for Linux (WSL) is feature of Windows operating system that enables to run Linux file system, along with Linux command-line tools and GUI apps, directly on Windows, alongside traditional Windows desktop and apps. Tool for developers, especially web developers, those working on open source projects, or deploying to Linux server environments.

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• RRID
• 1 year ago - submitted by Dongjun Han

NIDA-IRP Histology and Imaging Core serves NIDA-IRP researchers by providing access to existing and emerging neuroanatomical technologies to map and characterize neuronal circuits. Provides expertiese, consultations and training to NIDA-IRP researchers in the adaptation and execution of neuroanatomical techniques and procedures.

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• SciCrunch
• 1 year ago - submitted by Edyta Vieth