Curator Dashboard

An R package for analyzing large Affymetrix data sets.

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• SciCrunch
• 13 years ago - by Anonymous

A comprehensive design and analysis tool for setting up and interpreting your microarray experiments.

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• SciCrunch
• 13 years ago - by Anonymous

Software for a complete CGH and CGH+SNP microarray data analysis and data reporting solution to streamline the day-to-day cytogenetic sample analysis research workflow.

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• SciCrunch
• 13 years ago - by Anonymous

A web tool for the analysis of aCGH data sets. They focus on calling gains and losses and estimating the number of copy changes. Note: ADaCGH will continue being maintained, but is deprecated. Their new tool for CGH and CNV is WaviCGH, http://wavi.bioinfo.cnio.es/

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• SciCrunch
• 13 years ago - by Anonymous

A software tool for the normalization, visualization, breakpoint detection, and comparative analysis of array-CGH data which allows the accurate and sensitive detection of CNAs.

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• SciCrunch
• 13 years ago - by Anonymous

A suite of distributed software applications for aligning short DNA reads, and manipulating and analyzing short read alignments.

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• SciCrunch
• 13 years ago - by Anonymous

A software suite including a scalable hierarchical multitasking parallel infrastructure and the classical sequencing algorithms.

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• SciCrunch
• 13 years ago - by Anonymous

A short string alignment package whose goal is to provide an all-inclusive set of tools to handle short (NGS-like) reads.

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• SciCrunch
• 13 years ago - by Anonymous

A new parallel read-mapping algorithm optimized for mapping next-generation sequence data to the human genome and other reference genomes, for use in a variety of biological analyses including SNP discovery, genotyping, and personal genomics.

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• SciCrunch
• 13 years ago - by Anonymous

Software for aligning sequencing reads against large reference genome. Consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. First for sequence reads up to 100bp, and other two for longer sequences ranged from 70bp to 1Mbp.

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• SciCrunch
• 13 years ago - by Anonymous

A generic web-based system, providing statistical methodology and computing power to handle a variety of biological inquires on genomic datasets.

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• SciCrunch
• 13 years ago - by Anonymous

Tool that facilitates the design and optimization of gene-specific DNA methylation assays. Beyond its use as an epigenetic primer-design tool, it provides extensive support for epigenetic biomarker optimization. Download MethMarker or start it directly from within your web browser.

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• SciCrunch
• 13 years ago - by Anonymous

You can easily align, visualize and quantify bisulfite sequence data for CpG methylation analysis.

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• SciCrunch
• 13 years ago - by Anonymous

Improved mapper for bisulfite sequencing reads on DNA methylation.

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• SciCrunch
• 13 years ago - by Anonymous

An approach for the analysis of two-base encoding bisulfite sequencing data.

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• SciCrunch
• 13 years ago - by Anonymous

A high-efficiency and easy-to-use analysis pipeline for MeRIP-Seq peak-finding at high resolution, which compares distributions of reads between immunoprecipitation sample and control sample.

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• SciCrunch
• 13 years ago - by Anonymous

A peak-caller for CLIP- and RIP-Seq data. It takes input in BED or BAM format and identifies regions of significant read enrichment. Additional covariates may optionally be provided to further inform the peak-calling process., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 13 years ago - by Anonymous

A hidden Markov model (HMM)-based software to predict clusters RNA motif sites.

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• SciCrunch
• 13 years ago - by Anonymous

A public database that provides the complete transcription factor (TF) repertoires of 6 genome sequenced tree species: papaya (Carica papaya), jatoropha (Jatropha curcas), cassava (Manihot esculenta), poplar (Populus trichocarpa), castor bean (Ricinus communis) and grape vine (Vitis vinifera). from annotated genes on each genome.

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• SciCrunch
• 13 years ago - by Anonymous

A Knowledge Database of Soybean Transcription Factors. PSI-BLAST is available to find hits from the database.

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• SciCrunch
• 13 years ago - by Anonymous