Curator Dashboard

A method for CNV detection that supplements the depth-of-coverage with paired-end mapping information, where matepairs mapping discordantly to the reference serve to indicate the presence of variation.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Identifies high quality CNVs based on the density of homozygous SNPs and the ratio of heterozygous SNP reads.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

A program to detect copy number variants from short read sequence data.

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• SciCrunch
• 13 years ago - by Anonymous

A novel framework for the identification of CNA events that uses flowcell-to-flowcell variability to estimate the false positive rate and the depth of coverage to finalize copy number calls.

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• SciCrunch
• 13 years ago - by Anonymous

A Bioconductor package to estimate Copy Number Aberrations (CNA) in cancer samples.

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• SciCrunch
• 13 years ago - by Anonymous

A statistical method to detect CNV and LOH using depth-of-coverage and B-allele frequencies from mapped short sequence reads in exome sequencing data.

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• SciCrunch
• 13 years ago - by Anonymous

A tool for copy number variation (CNV) detection for targeted resequencing data such as those from whole-exome capture data.

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• SciCrunch
• 13 years ago - by Anonymous

A graphical, event-driven tool for CNA/AI-coupled analysis of exome sequencing reads.

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• SciCrunch
• 13 years ago - by Anonymous

Software application for the isolation and the type prediction of intra- and inter-chromosomal rearrangements from paired-end/mate-pair sequencing data provided by the high-throughput sequencing technologies. This tool aims to identify structural variations with both clustering and sliding-window strategies, and helping in their visualization at the genome scale. It is compatible with SOLiD and Illumina (>=1.3) reads.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Lille 2 University of Health and Law is located in Lille, Nord-Pas-de-Calais, France. University was established in 1562. It is accredited by Ministère de l'Enseignement supérieur et de la Recherche, France.

• Organization
• SciCrunch
• 17 years ago - submitted by Andrea Stagg

A computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data intended for haploid microbial genomes.

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• SciCrunch
• 13 years ago - by Anonymous

A complete whole-exome sequencing pipeline and provides easy access through interface to intermediate and final results.

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• SciCrunch
• 13 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 18,2023. Targeted RE-sequencing Annotation Tool that offers a comprehensive, open framework, end-to-end solution for analyzing and interpreting targeted re-sequencing data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 13 years ago - by Anonymous

Cloud-enabled pipeline for the comprehensive analysis of exome sequencing data.

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• SciCrunch
• 13 years ago - by Anonymous

A Toolkit for analyzing next-generation DNA Re-Sequencing data.

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• SciCrunch
• 13 years ago - by Anonymous

The product line encompasses distinct products for the specific needs of clinical research, saving time and money while allowing customers to focus on the answers they need most.

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• SciCrunch
• 13 years ago - by Anonymous

It streamlines the next generation sequencing data analysis using BFAST for aligner, SAMTOOLS for SNP caller, and ANNOVAR for annotation.

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• SciCrunch
• 13 years ago - by Anonymous

An automated pipeline for detecting genetic variants from High-throUghput GEnome SEQuencing.

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• SciCrunch
• 13 years ago - by Anonymous

An integrated software solution for the analysis of DNA-Seq data from commonly used NGS equipments such as Roche/454, Illumina and Ion Torrent.

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• SciCrunch
• 13 years ago - by Anonymous

Analysis Workflow and Quality Metric Management for DNA-Seq Experiments.

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• SciCrunch
• 13 years ago - by Anonymous