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Software tool as error corrector for Illumina reads. It is distributed and used with MaSuRCA, or it can be used independently.

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• SciCrunch
• 13 years ago - by Anonymous

A software package to correct substitution sequencing errors in experiments with deep coverage (e.g. >15X), specifically intended for Illumina sequencing reads.

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• SciCrunch
• 13 years ago - by Anonymous

Software tool as content dependent read trimmer for Illumina data. Content dependent read trimming software for Illumina/Solexa sequencing data.

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• SciCrunch
• 13 years ago - by Anonymous

A user-friendly utility for processing and analyzing 454 GS-FLX data in biodiversity studies.

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• SciCrunch
• 13 years ago - by Anonymous

A fast and lightweight software to trim adapters and low quality regions in reads from ultra high-throughput next-generation sequencing machines.

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• SciCrunch
• 13 years ago - by Anonymous

Allows detecting and removing multiple alien sequences in both ends of sequence reads.

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• SciCrunch
• 13 years ago - by Anonymous

Software program to remove residual adapter sequences from next generation sequencing reads. Used for cleaning of next-generation sequencing reads. AdapterRemoval v2 introduces improvements in throughput, through use of single instruction, multiple data (SIMD; SSE1 and SSE2) instructions and multi-threading support; handles datasets containing reads or read-pairs with different adapters or adapter pairs; provides simultaneous demultiplexing and adapter trimming; has ability to reconstruct adapter sequences from paired-end reads for poorly documented data sets; provides native gzip and bzip2 support.

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• SciCrunch
• 13 years ago - by Anonymous

A software package for building accurate ConSeqs from tagged reads.

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• SciCrunch
• 13 years ago - by Anonymous

Software for discovering motifs that induce sequencing errors.

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• SciCrunch
• 13 years ago - by Anonymous

Web based Laboratory Information Management System (LIMS) system which can be used to track samples and distribute results within small sequencing facility. Provides simple way to track samples within facility and return sequencing, mapping and QC results to users.

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• SciCrunch
• 13 years ago - by Anonymous

Software providing a framework for collecting, storing, and accessing data produced by a wide variety of experiments.

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• SciCrunch
• 13 years ago - by Anonymous

A laboratory information management system (LIMS) for a next-generation sequencing (NGS) laboratory within the existing Galaxy platform.

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• SciCrunch
• 13 years ago - by Anonymous

Open Source laboratory information management systems.

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• SciCrunch
• 13 years ago - by Anonymous

An open infrastructure for managing projects and data in life sciences that allows to store and access experimental data together with its scientific context. The platform connects the data from scientific instruments with data analysis tools, including workflow, annotation, and data visualization support. All public data can be searched and used to carry out inter-experiment analyses. For a fee, B-Fabric Order allows you to order the following analytical services at the FGCZ independent of a User Lab research project: Mass spectrometry, Protein sequencing, peptide sequencing, Amino acid analysis, Chromatography, Electrophoresis.

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• SciCrunch
• 13 years ago - by Anonymous

Accurate error correction in high-throughput sequencing data.

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• SciCrunch
• 13 years ago - by Anonymous

A tool for error correction of short read datasets with non-uniform coverage, such as single-cell data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 13 years ago - by Anonymous

Tool to find regions of sequence similarity within selected protein databases quickly, with minimum loss of sensitivity.

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• SciCrunch
• 13 years ago - by Anonymous

A web-based tool used to search translated nucleotide databases using a translated nucleotide query.

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• SciCrunch
• 13 years ago - by Anonymous

Tool to search translated nucleotide databases using a protein query.

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• SciCrunch
• 13 years ago - by Anonymous

Software that searches for short patterns in large DNA databases, allowing for approximate matches., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 13 years ago - by Anonymous