Curator Dashboard

Software to visualize the various data from the RNA-Seq analyzing process, for single or multiple samples.

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• SciCrunch
• 13 years ago - by Anonymous

An algorithm for Discovery of Novel Fusion Transcripts with the ability to align reads across fusion points, which results from the breakage and re-joining of two different chromosomes, or from rearrangements within a chromosome.

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• SciCrunch
• 13 years ago - by Anonymous

A de novo transcriptome assembly from next-generation sequencing data.

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• SciCrunch
• 13 years ago - by Anonymous

Software designed to assemble Illumina single or paired-end reads.

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• SciCrunch
• 13 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023. Software tool as de novo transcriptome assembler designed to produce transcripts from short read sequencing technologies, such as Illumina, SOLiD, or 454 in the absence of any genomic assembly.

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• SciCrunch
• 13 years ago - by Anonymous

Software for identifying fusion transcripts using paired-end RNA-seq.

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• SciCrunch
• 13 years ago - by Anonymous

A perl-based software package, which can be used to find fusion transcript candidates in RNA-Seq data.

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• SciCrunch
• 13 years ago - by Anonymous

Software tool that enables analysis of RNA-seq data with or without reference genome. Local transcriptome assembler for SNPs, indels and AS events.

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• SciCrunch
• 13 years ago - by Anonymous

A C/C++ program to infer isoforms based on short RNA-Seq (single-end and paired-end) reads, exon-intron boundary and TSS/PAS information.

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• SciCrunch
• 13 years ago - by Anonymous

An iterative De Bruijn Graph De Novo short read assembler for transcriptome.

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• SciCrunch
• 13 years ago - by Anonymous

Highly accurate de novo assembly of RNA-Seq with efficient chimera-detection.

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• SciCrunch
• 13 years ago - by Anonymous

A tool to assist in the designing of RNA Seq experiments that have adequate power to detect differential expression at the level required to achieve experimental aims.

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• SciCrunch
• 13 years ago - by Anonymous

Software for genomic expression data mining using a statistical technique for finding significant genes in a set of microarray experiments.

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• SciCrunch
• 13 years ago - by Anonymous

Software-as-a-service for big data management offering fast, reliable, secure file transfer and sharing services to non-profit researchers. It combines state-of-the-art algorithms, data management tools, a graphical workflow environment, and an elastic computing infrastructure making it easy to manipulate, store, and share your data, no matter how big it gets.

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• SciCrunch
• 13 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 29, 2019. A cloud platform for next-generation sequencing analysis and storage. Services include: * g-Analysis: Automated genome analysis pipelines at your fingertips * g-Cluster: Easy-of-use and cost-effective genome research infrastructure * g-Storage: A simple way to store, share and protect data * g-Insight: Accurate analysis and interpretation of biological meaning of genome data

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• SciCrunch
• 13 years ago - by Anonymous

A universal collaborative platform for bioinformatics application development that allows users to store and share large data sets securely within and across organizations, with free access to public data from major databases. The platform includes open-source and proprietary genomics applications, working together independent of file formats. For developers an SDK, APIs and a marketplace are provided.

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• SciCrunch
• 13 years ago - by Anonymous

A cloud-based platform to support genomics at your organization.

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• SciCrunch
• 13 years ago - by Anonymous

Offers genome analysis resources for cloud computing platforms such as Amazon EC2.

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• SciCrunch
• 13 years ago - by Anonymous

Cloud Computing and a graphical workflow composer that uses distributed computing resources on demand.''''

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• SciCrunch
• 13 years ago - by Anonymous

Cloud platform to be directly integrated in to the industry?s leading sequencing platforms, with no cumbersome and time consuming data transfer steps.

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• SciCrunch
• 13 years ago - by Anonymous