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Software that uses the greedy algorithm for nucleotide sequence alignment search.

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• SciCrunch
• 13 years ago - by Anonymous

Software designed to quickly find sequences of 95% and greater similarity of length 25 bases or more.

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• SciCrunch
• 13 years ago - by Anonymous

Software for a massively distributed metagenome assembler that is coupled with Ray Communities, which profiles microbiomes based on uniquely-colored k-mers.

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• SciCrunch
• 13 years ago - by Anonymous

A software program for assembling shotgun DNA sequence data.

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• SciCrunch
• 13 years ago - by Anonymous

A software package for de novo DNA sequence assembly.

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• SciCrunch
• 13 years ago - by Anonymous

Software for a short read de novo metagenome assembly created by modifying and extending a single-genome and de Bruijn-graph based assembler, Velvet.

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• SciCrunch
• 13 years ago - by Anonymous

A modular and open source metagenomic assembly and analysis pipeline.

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• SciCrunch
• 13 years ago - by Anonymous

Software for an iterative De Bruijn Graph De Novo short read assembler specially designed for de novo metagenomic assembly. (Please note that MetaIDBA is out of maintainance now, we recommend using IDBA-UD instead which generally performs better.)

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• SciCrunch
• 13 years ago - by Anonymous

Software for an iterative De Bruijn Graph De Novo Assembler for Short Reads Sequencing data with Highly Uneven Sequencing Depth.

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• SciCrunch
• 13 years ago - by Anonymous

Software for a novel de novo sequence assembler that discovers likely sequence reconstructions under the model.

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• SciCrunch
• 13 years ago - by Anonymous

Network Matching Algorithm using the de Bruijn graph assembly of metagenomes to improve the assembly of genes.

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• SciCrunch
• 13 years ago - by Anonymous

An RNA-Seq analysis pipeline which offers an express implementation of analysis steps for RNA sequencing datasets.

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• SciCrunch
• 13 years ago - by Anonymous

Software package for RNA-Seq-based transcriptomics. Used to analyse Illumina/Solexa-based RNA-Seq data, Affymetrix data and generic tabular two color or single channel array data. Offers variety of quality control methods that can be used to gain overview of experimental data technical quality and structure.

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• SciCrunch
• 13 years ago - by Anonymous

An automated bioinformatics pipeline that analyzes and quantitates high-throughput RNA-Seq datasets.

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• SciCrunch
• 13 years ago - by Anonymous

A pipeline to analyze paired end RNA-Seq data to generate gene expression values (RPKM) and gene-fusion candidates.

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• SciCrunch
• 13 years ago - by Anonymous

It is based on the Galaxy-framework and provides tools for read mapping, transcript reconstruction and quantitation as well as differential expression analysis.

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• SciCrunch
• 13 years ago - by Anonymous

Software tool designed to predict the oncogenic potential of fusion genes found by Next-Generation Sequencing in cancer cells.

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• SciCrunch
• 13 years ago - by Anonymous

A desktop application for the bench biologists to analyse RNA-Seq and microarray expression data. It performs gene-centric analyses such as differential expression and pathways using well-established R modules, integrates data from multiple sources, and enables editing of R commands., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 13 years ago - by Anonymous

A user-Frendly RNA-Seq gene eXpression analysis tool, empowered by the concept of cloud-computing.

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• SciCrunch
• 13 years ago - by Anonymous

A versatile framework based on the Hadoop implementation of the MapReduce algorithm, dedicated to high throughput sequencing data analysis on distributed computers.

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• SciCrunch
• 13 years ago - by Anonymous