Curator Dashboard

A Sequencing Simulator for Genomics and Metagenomics.

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• SciCrunch
• 13 years ago - by Anonymous

An interactive multi-view genome browser for next-generation comparative microorganism genomics.

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• SciCrunch
• 13 years ago - by Anonymous

An online toolbox for metagenomic data visualization.

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• SciCrunch
• 13 years ago - by Anonymous

Graphical user interface software for metadata-driven management, analysis, and visualization of microbiome data.

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• SciCrunch
• 13 years ago - by Anonymous

Software tool for protein coding gene prediction for prokaryotic genomes.

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• SciCrunch
• 13 years ago - by Anonymous

A software application for finding complete and incomplete genes in metagenomic reads.

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• SciCrunch
• 13 years ago - by Anonymous

A gene-finding software program for prokaryote and phage., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 13 years ago - by Anonymous

Data analysis service for prediction of vertebrate and C. elegans genes.

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• SciCrunch
• 13 years ago - by Anonymous

A software system for finding genes in environmental shotgun DNA sequences.

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• SciCrunch
• 13 years ago - by Anonymous

A software system for finding genes in microbial DNA, especially the genomes of bacteria, archaea, and viruses.

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• SciCrunch
• 13 years ago - by Anonymous

A family of gene prediction programs developed at Georgia Institute of Technology.

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• SciCrunch
• 13 years ago - by Anonymous

A software application for finding fragmented genes in short reads and may be applied to predict prokaryotic genes in incomplete assemblies or complete genomes.

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• SciCrunch
• 13 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 10,2020. Data analysis service for Hidden Markov Model (HMM)-based gene structure prediction (multiple genes, both chains).

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• SciCrunch
• 13 years ago - by Anonymous

Metagenomic software pipeline for analysis and comparison of very large metagenomes with fast clustering and functional annotation.

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• SciCrunch
• 13 years ago - by Anonymous

A tool for high-performance comparative metagenomics that allows users to view, query, browse, and compare metagenomics annotation profiles from short reads or assemblies. Users can use statistical tests, hierarchical clustering, multidimensional scaling, and heat maps to compare multiple datasets at various functional and taxonomic levels.

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• SciCrunch
• 13 years ago - by Anonymous

A web-server for fast comparative functional profiling of metagenomes.

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• SciCrunch
• 13 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE, documented May 26, 2016; however, the URL provides links to associated projects and data. A suite of data query, download, upload, analysis and sharing tools serving the needs of the microbial ecology research community, and other scientists using metagenomics data.

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• SciCrunch
• 13 years ago - by Anonymous

Web Server for Taxonomic Assignment of Metagenome Sequences that is a fast and accurate sequence composition-based classifier that utilizes the hierarchical relationships between clades. Taxonomic assignments with the web server can be made with a generic model, or with sample-specific models that users can specify and create. Several interactive visualization modes and multiple download formats allow quick and convenient analysis and downstream processing of taxonomic assignments.

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• SciCrunch
• 13 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. A simulator of gene expression patterns in order to evaluate different analysis methods, such as clustering and principle component analysis (PCA).

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• SciCrunch
• 13 years ago - by Anonymous

Algorithm that divides a set of sequences into clusters

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• SciCrunch
• 13 years ago - by Anonymous