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Database of orthologous protein coding genes across vertebrates, arthropods, fungi, basal metazoans, and bacteria.

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• SciCrunch
• 13 years ago - by Anonymous

A software tool for high speed estimation of homology relations within and between species in massive data sets.

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• SciCrunch
• 13 years ago - by Anonymous

A database that identifies orthologs among publicly available, complete genomes. It offers a comprehensive search and numerous display options for 4.7 million proteins from 1000 species. The main features are the orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Software providing a scoring technique for stability selection, which improves the performance of feature selection with LARS. TIGRESS can be run online through the GenePattern platform (GP-DREAM, http://dream.broadinstitute.org).

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• SciCrunch
• 13 years ago - by Anonymous

Calpain cleavage prediction using multiple kernel learning.

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• SciCrunch
• 13 years ago - by Anonymous

Database access to information services, educational opportunities, and resources in print and electronic format to faculty, students, and researchers in the schools of the health sciences.

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• SciCrunch
• 13 years ago - by Anonymous

A knowledge-based data analysis service to predict the localization site(s) of both single-localized and multi-localized proteins.

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• SciCrunch
• 13 years ago - by Anonymous

Data analysis service for predicting subcellular localization of plant proteins with single and multiple sites.

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• SciCrunch
• 13 years ago - by Anonymous

A support vector machine (SVM)-based method for the prediction of 4 major subcellular localization (cytoplasm, mitochondrial, nuclear and plasma membrane) of human proteins using various features such as i) amino acid composition, ii) dipeptide composition and iii) evolutionary information of proteins.

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• SciCrunch
• 13 years ago - by Anonymous

Data analysis service for predicting subcellular localization of eukaryotic proteins including those with multiple sites. Euk-mPLoc covers 22 eukaryotic subcellular locations.

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• SciCrunch
• 13 years ago - by Anonymous

A comprehensive database that gathers all prediction outputs concerning complete prokaryotic proteomes. It is a client-server application, with the server installed and staying at Biogenouest bioinformatics platform, keeping all needed pre-computed genomic data, while the CoBaltDB Client or GUI is a Java application which communicates with the server via web-services. The CoBaltDB Client needs to be downloaded on your computer.

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• SciCrunch
• 13 years ago - by Anonymous

Data analysis service for cluster-based Subcellular localization prediction.

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• SciCrunch
• 13 years ago - by Anonymous

A subCELlular LOcalization predictor based on a multi-class support vector machine (SVM) classification system. CELLO uses 4 types of sequence coding schemes: the amino acid composition, the di-peptide composition, the partitioned amino acid composition and the sequence composition based on the physico-chemical properties of amino acids. They combine votes from these classifiers and use the jury votes to determine the final assignment.

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• SciCrunch
• 13 years ago - by Anonymous

International collaboration of the International Nucleotide Sequence Databases (INSD), DDBJ, ENA, and GenBank, maintained for over 18 years. Individuals submitting data to the international sequence databases should be aware of INSDC policy.

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• SciCrunch
• 13 years ago - by Anonymous

A package of web-servers for predicting subcellular localization of proteins in different organisms.

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• SciCrunch
• 13 years ago - by Anonymous

A predictor for the subcellular localization of proteins in eukaryotes that is based on a decision tree of several support vector machines (SVMs). It classifies up to four localizations for Fungi and Metazoan proteins and five localizations for Plant ones. BaCelLo's predictions are balanced among different classes and all the localizations are considered as equiprobable.

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• SciCrunch
• 13 years ago - by Anonymous

Web server for the detection of the transmembrane regions of membrane proteins using their 3D structure only.

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• SciCrunch
• 13 years ago - by Anonymous

Prediction tool to reconstruct putative dimer conformations for given sequences of transmembrane protein fragments, which are considered as ideal alpha-helices.

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• SciCrunch
• 13 years ago - by Anonymous

Comprehensive and continuously updated transmembrane protein database of the Protein Data Bank (PDB) created by scanning all PDB entries with the TMDET algorithm. Resource for transmembrane proteins and their structures., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 13 years ago - by Anonymous

Database that provides a collection of transmembrane, monotopic and peripheral proteins from the Protein Data Bank whose spatial arrangements in the lipid bilayer have been calculated theoretically and compared with experimental data. The database allows analysis, sorting and searching of membrane proteins based on their structural classification, species, destination membrane, numbers of transmembrane segments and subunits, numbers of secondary structures and the calculated hydrophobic thickness or tilt angle with respect to the bilayer normal.

• Resource
• SciCrunch
• 13 years ago - by Anonymous