Curator Dashboard

A highly flexible software toolbox for processing 1D and 2D NMR and EPR spectra under MATLAB, creating high-quality 1D, 2D or 3D plots from the spectra and printing them in every type of format that is supported by MATLAB.

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• SciCrunch
• 12 years ago - by Anonymous

A software tool for copy number variation (CNV) detection for whole-exome data from paired tumour/matched normal samples.

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• SciCrunch
• 12 years ago - by Anonymous

An open-source Python-based environment that provides a scriptable framework for efficient access to manufacturers'' proprietary data files via mzAPI.

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• SciCrunch
• 12 years ago - by Anonymous

An application framework mainly suited for developers working in the domain of bioinformatics for metabolomics and proteomics.

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• SciCrunch
• 12 years ago - by Anonymous

Software that enables rapid tool creation by providing a robust, pluggable development framework that simplifies and unifies data file access, and performs standard proteomics and LCMS dataset computations.

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• SciCrunch
• 12 years ago - by Anonymous

An open-source Java library that parses X!Tandem XML result files into an easily accessible and fully functional object model.

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• SciCrunch
• 12 years ago - by Anonymous

Software providing a user-friendly, lightweight and open-source graphical user interface for configuring and running the freely available OMSSA and X!Tandem search engines simultaneously.

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• SciCrunch
• 12 years ago - by Anonymous

A Java library to parse the msf files that constitute the output of Proteome Discoverer.

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• SciCrunch
• 12 years ago - by Anonymous

An open source software application and library written in Java that provides a uniform annotation of identified spectra stored in the PRIDE database.

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• SciCrunch
• 12 years ago - by Anonymous

Suite of software tools that allows users to convert search result files into PRIDE XML, generate mzTab skeleton files that can be used as a basis to submit quantitative and gel-based MS data, and post-process PRIDE XML files by filtering out contaminants and empty spectra.

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• SciCrunch
• 12 years ago - by Anonymous

A collection of Java application programming interfaces (APIs) to parse the most commonly used peak list and XML-based mass spectrometry (MS) data formats: DTA, MS2, MGF, PKL, mzXML, mzData, and mzML.

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• SciCrunch
• 12 years ago - by Anonymous

Software that allows fast and user-friendly verification of Mascot result files, as well as data quantification using isotopic labeling methods (SILAC/ICAT) or label free approaches (spectral counting, MS signal comparison).

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• SciCrunch
• 12 years ago - by Anonymous

A software tool for scientists working with stable isotopic labelling and high resolution liquid chromatography mass spectrometry.

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• SciCrunch
• 12 years ago - by Anonymous

A proteomics software tool for quantitatively analyzing large mass spectrometric datasets acquired from ICPL based proteomics experiments.

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• SciCrunch
• 12 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 23rd,2023. Software that combines Lagrangian relaxation for solving an integer linear programming formulation with an adaptation of Yen''s k shortest paths algorithm.

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• SciCrunch
• 12 years ago - by Anonymous

Software for pipelined analysis of mass spectrometry data.

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• SciCrunch
• 12 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE.Documented on May 23rd,2023. Software that provides a set of computational tools which can be easily combined into analysis pipelines even by non-experts and can be used in proteomics workflows.

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• SciCrunch
• 12 years ago - by Anonymous

Software providing a data analysis pipeline for shotgun mass-spectrometry proteomics.

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• SciCrunch
• 12 years ago - by Anonymous

An algorithm to align LC-MS samples and to match corresponding ion species across samples.

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• SciCrunch
• 12 years ago - by Anonymous

Software that aligns matrices along a single axis using Dynamic Time Warping (DTW) and a one-to-one (bijective) interpolated warp function.

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• SciCrunch
• 12 years ago - by Anonymous