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Algorithm for the problem of globally aligning a pair of protein-protein interaction (PPI) networks.

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• SciCrunch
• 12 years ago - by Anonymous

Software using a reference-free method for detecting clusters of breakpoints from the chromosomal rearrangements.

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• SciCrunch
• 12 years ago - by Anonymous

A software which detects and analyses piRNA clusters based on quantifiable deviations from a hypothetical uniform distribution regarding the decisive piRNA cluster characteristics.

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• SciCrunch
• 12 years ago - by Anonymous

A metabolite identification software using tandem mass spectrometry and kernel methods.

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• SciCrunch
• 12 years ago - by Anonymous

An algorithm implemented in Matlab, Python and R that uses matrix multiplications to simultaneously calculate the Kruskal-Wallis test statistic for several millions of marker-trait combinations at once.

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• SciCrunch
• 12 years ago - by Anonymous

A Java-based proteomics cloud computing pipeline system for peptide and protein identifications.

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• SciCrunch
• 12 years ago - by Anonymous

Software providing a user-friendly and lightweight graphical user interface for running parallelized versions of the freely available de novo sequencing software PepNovo+, greatly simplifying the use of de novo sequencing in proteomics.

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• SciCrunch
• 12 years ago - by Anonymous

A software library containing code shared by many research projects, amongst others containing panels for visualizing spectra and chromatograms and objects for representing peptides and proteins etc. This library can be of use to other research groups doing computational proteomics.

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• SciCrunch
• 12 years ago - by Anonymous

Software that provides one-to-many alignments of reactions in a pair of metabolic pathways.

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• SciCrunch
• 12 years ago - by Anonymous

Software providing a complete, accurate and efficient solution for analysis of large scale base-resolution DNA methylation data, bisulfite sequencing or single molecule direct sequencing.

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• SciCrunch
• 12 years ago - by Anonymous

Software to calculate the number of significant SNPs in pathway divided by the number of SNPs in pathway.

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• SciCrunch
• 12 years ago - by Anonymous

A utility that uses a phylogenetic approach to refine orthology inferences made by graph-based (or other) methods.

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• SciCrunch
• 12 years ago - by Anonymous

A software package containing implementations of efficient algorithms for two common problems in phylogenetics: estimating DNA/protein sequence distances and reconstructing a phylogeny from a distance matrix.

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• SciCrunch
• 12 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE.Documented on February 28,2023. Software program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models.

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• SciCrunch
• 12 years ago - by Anonymous

A modular and configurable open source pipeline software, written in Perl, used for the rapid annotation of bacterial genome sequences.

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• SciCrunch
• 12 years ago - by Anonymous

A software tool to predict the conformational epitopes from 3D structures.

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• SciCrunch
• 12 years ago - by Anonymous

A large-scale whole genome simulation tool which generates large numbers of whole genomes with known sequence characteristics based on direct sampling of experimentally known or theorized variations.

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• SciCrunch
• 12 years ago - by Anonymous

A software tool to locate all copies of sequences in a reference sequence using read-pairs.

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• SciCrunch
• 12 years ago - by Anonymous

Software that uses structure-based chemical shift predictions to solve the backbone resonance assignment problem in protein NMR spectroscopy.

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• SciCrunch
• 12 years ago - by Anonymous

Free software tool for visualisation and processing of experimental and simulated nuclear magnetic resonance (NMR) spectra.

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• SciCrunch
• 12 years ago - by Anonymous