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MMAX2
A GUI-based text annotation tool for creating and visualizing annotations.
- Resource
- SciCrunch
- 12 years ago - by Anonymous
Knowtator
A general-purpose text annotation tool that is integrated with the Prot����g���� knowledge representation system.
- Resource
- SciCrunch
- 12 years ago - by Anonymous
Bionotate
An open source annotation tool for the distributed creation of a large corpus.
- Resource
- SciCrunch
- 12 years ago - by Anonymous
ORCA
A Matlab package extending the scope of established COBRA metabolic modelling.
- Resource
- SciCrunch
- 12 years ago - by Anonymous
COBRApy
Software Python package that provides support for basic COnstraint-Based Reconstruction and Analysis (COBRA) methods.
- Resource
- SciCrunch
- 12 years ago - by Anonymous
NetCoffee
A fast and accurate algorithm which allows to find a global alignment of multiple protein-protein interaction networks.
- Resource
- SciCrunch
- 12 years ago - by Anonymous
PSimScan
A flexible open source protein similarity search software tool which provides a significant gain in speed compared to BLASTP at the price of controlled sensitivity loss.
- Resource
- SciCrunch
- 12 years ago - by Anonymous
SAM format
A generic alignment format for storing read alignments against reference sequences, supporting short and long reads (up to 128 Mbp) produced by different sequencing platforms.
- Resource
- SciCrunch
- 12 years ago - by Anonymous
VCFtools
Software package for working with VCF files. Used to provide easily accessible methods for working with complex genetic variation data in the form of VCF files.Implements various utilities for processing Variant Call Format files, including validation, merging, comparing. Provides general Perl API.
- Resource
- SciCrunch
- 12 years ago - by Anonymous
PBJelly
Software that automates the finishing process using long sequence reads in a reference-guided assembly process.
- Resource
- SciCrunch
- 12 years ago - by Anonymous
AHA
Contigs from a draft assembly generated by a different assembler can be joined using PacBio long reads.
- Resource
- SciCrunch
- 12 years ago - by Anonymous
QuteMol
Open source (GPL) software providing an interactive, high quality molecular visualization system.
- Resource
- SciCrunch
- 12 years ago - by Anonymous
Viewmol
Software providing a graphical front end for computational chemistry programs.
- Resource
- SciCrunch
- 12 years ago - by Anonymous
Toxmatch
A software tool to facilitate chemical similarity calculations.
- Resource
- SciCrunch
- 12 years ago - by Anonymous
Toxtree
A full-featured and flexible user-friendly open source software application, which is able to estimate toxic hazard by applying a decision tree approach.
- Resource
- SciCrunch
- 12 years ago - by Anonymous
NetMODE
Fast motif detection algorithm for subgraph size no more than 6.
- Resource
- SciCrunch
- 12 years ago - by Anonymous
MCDL
A small Java molecular viewer/editor for chemical structures, stored in Modular Chemical Descriptor Language linear notation.
- Resource
- SciCrunch
- 12 years ago - by Anonymous
GLARE
A software that facilitates and improves the design of chemical combinatorial libraries.
- Resource
- SciCrunch
- 12 years ago - by Anonymous
SketchEl
An interactive chemical molecule sketching tool, and molecular spreadsheet data entry application.
- Resource
- SciCrunch
- 12 years ago - by Anonymous
HopeMap
A connected-components based fast algorithm for network alignment.
- Resource
- SciCrunch
- 12 years ago - by Anonymous
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