Curator Dashboard

A pipeline to analyze paired end RNA-Seq data to generate gene expression values (RPKM) and gene-fusion candidates.

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• SciCrunch
• 13 years ago - by Anonymous

It is based on the Galaxy-framework and provides tools for read mapping, transcript reconstruction and quantitation as well as differential expression analysis.

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• SciCrunch
• 13 years ago - by Anonymous

Software tool designed to predict the oncogenic potential of fusion genes found by Next-Generation Sequencing in cancer cells.

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• SciCrunch
• 13 years ago - by Anonymous

A desktop application for the bench biologists to analyse RNA-Seq and microarray expression data. It performs gene-centric analyses such as differential expression and pathways using well-established R modules, integrates data from multiple sources, and enables editing of R commands., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 13 years ago - by Anonymous

A user-Frendly RNA-Seq gene eXpression analysis tool, empowered by the concept of cloud-computing.

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• SciCrunch
• 13 years ago - by Anonymous

A versatile framework based on the Hadoop implementation of the MapReduce algorithm, dedicated to high throughput sequencing data analysis on distributed computers.

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• SciCrunch
• 13 years ago - by Anonymous

Software to visualize the various data from the RNA-Seq analyzing process, for single or multiple samples.

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• SciCrunch
• 13 years ago - by Anonymous

An algorithm for Discovery of Novel Fusion Transcripts with the ability to align reads across fusion points, which results from the breakage and re-joining of two different chromosomes, or from rearrangements within a chromosome.

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• SciCrunch
• 13 years ago - by Anonymous

A de novo transcriptome assembly from next-generation sequencing data.

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• SciCrunch
• 13 years ago - by Anonymous

Software designed to assemble Illumina single or paired-end reads.

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• SciCrunch
• 13 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023. Software tool as de novo transcriptome assembler designed to produce transcripts from short read sequencing technologies, such as Illumina, SOLiD, or 454 in the absence of any genomic assembly.

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• SciCrunch
• 13 years ago - by Anonymous

Software for identifying fusion transcripts using paired-end RNA-seq.

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• SciCrunch
• 13 years ago - by Anonymous

A perl-based software package, which can be used to find fusion transcript candidates in RNA-Seq data.

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• SciCrunch
• 13 years ago - by Anonymous

Software tool that enables analysis of RNA-seq data with or without reference genome. Local transcriptome assembler for SNPs, indels and AS events.

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• SciCrunch
• 13 years ago - by Anonymous

A C/C++ program to infer isoforms based on short RNA-Seq (single-end and paired-end) reads, exon-intron boundary and TSS/PAS information.

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• SciCrunch
• 13 years ago - by Anonymous

An iterative De Bruijn Graph De Novo short read assembler for transcriptome.

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• SciCrunch
• 13 years ago - by Anonymous

Highly accurate de novo assembly of RNA-Seq with efficient chimera-detection.

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• SciCrunch
• 13 years ago - by Anonymous

A tool to assist in the designing of RNA Seq experiments that have adequate power to detect differential expression at the level required to achieve experimental aims.

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• SciCrunch
• 13 years ago - by Anonymous

Software for genomic expression data mining using a statistical technique for finding significant genes in a set of microarray experiments.

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• SciCrunch
• 13 years ago - by Anonymous

Software-as-a-service for big data management offering fast, reliable, secure file transfer and sharing services to non-profit researchers. It combines state-of-the-art algorithms, data management tools, a graphical workflow environment, and an elastic computing infrastructure making it easy to manipulate, store, and share your data, no matter how big it gets.

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• SciCrunch
• 13 years ago - by Anonymous