Curator Dashboard

A tool for high-performance comparative metagenomics that allows users to view, query, browse, and compare metagenomics annotation profiles from short reads or assemblies. Users can use statistical tests, hierarchical clustering, multidimensional scaling, and heat maps to compare multiple datasets at various functional and taxonomic levels.

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• SciCrunch
• 13 years ago - by Anonymous

A web-server for fast comparative functional profiling of metagenomes.

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• SciCrunch
• 13 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE, documented May 26, 2016; however, the URL provides links to associated projects and data. A suite of data query, download, upload, analysis and sharing tools serving the needs of the microbial ecology research community, and other scientists using metagenomics data.

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• SciCrunch
• 13 years ago - by Anonymous

Web Server for Taxonomic Assignment of Metagenome Sequences that is a fast and accurate sequence composition-based classifier that utilizes the hierarchical relationships between clades. Taxonomic assignments with the web server can be made with a generic model, or with sample-specific models that users can specify and create. Several interactive visualization modes and multiple download formats allow quick and convenient analysis and downstream processing of taxonomic assignments.

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• SciCrunch
• 13 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. A simulator of gene expression patterns in order to evaluate different analysis methods, such as clustering and principle component analysis (PCA).

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• SciCrunch
• 13 years ago - by Anonymous

Algorithm that divides a set of sequences into clusters

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• SciCrunch
• 13 years ago - by Anonymous

Software that uses the greedy algorithm for nucleotide sequence alignment search.

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• SciCrunch
• 13 years ago - by Anonymous

Software designed to quickly find sequences of 95% and greater similarity of length 25 bases or more.

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• SciCrunch
• 13 years ago - by Anonymous

Software for a massively distributed metagenome assembler that is coupled with Ray Communities, which profiles microbiomes based on uniquely-colored k-mers.

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• SciCrunch
• 13 years ago - by Anonymous

A software program for assembling shotgun DNA sequence data.

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• SciCrunch
• 13 years ago - by Anonymous

A software package for de novo DNA sequence assembly.

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• SciCrunch
• 13 years ago - by Anonymous

Software for a short read de novo metagenome assembly created by modifying and extending a single-genome and de Bruijn-graph based assembler, Velvet.

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• SciCrunch
• 13 years ago - by Anonymous

A modular and open source metagenomic assembly and analysis pipeline.

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• SciCrunch
• 13 years ago - by Anonymous

Software for an iterative De Bruijn Graph De Novo short read assembler specially designed for de novo metagenomic assembly. (Please note that MetaIDBA is out of maintainance now, we recommend using IDBA-UD instead which generally performs better.)

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• SciCrunch
• 13 years ago - by Anonymous

Software for an iterative De Bruijn Graph De Novo Assembler for Short Reads Sequencing data with Highly Uneven Sequencing Depth.

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• SciCrunch
• 13 years ago - by Anonymous

Software for a novel de novo sequence assembler that discovers likely sequence reconstructions under the model.

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• SciCrunch
• 13 years ago - by Anonymous

Network Matching Algorithm using the de Bruijn graph assembly of metagenomes to improve the assembly of genes.

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• SciCrunch
• 13 years ago - by Anonymous

An RNA-Seq analysis pipeline which offers an express implementation of analysis steps for RNA sequencing datasets.

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• SciCrunch
• 13 years ago - by Anonymous

Software package for RNA-Seq-based transcriptomics. Used to analyse Illumina/Solexa-based RNA-Seq data, Affymetrix data and generic tabular two color or single channel array data. Offers variety of quality control methods that can be used to gain overview of experimental data technical quality and structure.

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• SciCrunch
• 13 years ago - by Anonymous

An automated bioinformatics pipeline that analyzes and quantitates high-throughput RNA-Seq datasets.

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• SciCrunch
• 13 years ago - by Anonymous