Curator Dashboard

A package of web-servers for predicting subcellular localization of proteins in different organisms.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

A predictor for the subcellular localization of proteins in eukaryotes that is based on a decision tree of several support vector machines (SVMs). It classifies up to four localizations for Fungi and Metazoan proteins and five localizations for Plant ones. BaCelLo's predictions are balanced among different classes and all the localizations are considered as equiprobable.

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• SciCrunch
• 13 years ago - by Anonymous

Web server for the detection of the transmembrane regions of membrane proteins using their 3D structure only.

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• SciCrunch
• 13 years ago - by Anonymous

Prediction tool to reconstruct putative dimer conformations for given sequences of transmembrane protein fragments, which are considered as ideal alpha-helices.

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• SciCrunch
• 13 years ago - by Anonymous

Comprehensive and continuously updated transmembrane protein database of the Protein Data Bank (PDB) created by scanning all PDB entries with the TMDET algorithm. Resource for transmembrane proteins and their structures., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Database that provides a collection of transmembrane, monotopic and peripheral proteins from the Protein Data Bank whose spatial arrangements in the lipid bilayer have been calculated theoretically and compared with experimental data. The database allows analysis, sorting and searching of membrane proteins based on their structural classification, species, destination membrane, numbers of transmembrane segments and subunits, numbers of secondary structures and the calculated hydrophobic thickness or tilt angle with respect to the bilayer normal.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

A Database of Potassium Ion Channel Homology Models & Molecular Dynamics Simulations.

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• SciCrunch
• 13 years ago - by Anonymous

A database of membrane protein/lipid interactions by coarse-grained molecular dynamics simulations.

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• SciCrunch
• 13 years ago - by Anonymous

An open-source program for doing molecular docking.

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• SciCrunch
• 13 years ago - by Anonymous

Database that contains about 1,170 drugs, 2,785 Cytochrome-Drug interactions and about 1,200 alleles.

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• SciCrunch
• 13 years ago - by Anonymous

A genomics database project is an academic research program to identify molecular features of cancers that predict response to anti-cancer drugs.

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• SciCrunch
• 13 years ago - by Anonymous

A set of analysis tools using advanced algorithms to reveal the true structure of your gene expression data.

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• SciCrunch
• 13 years ago - by Anonymous

Web based instant protein network modeler for newly sequenced species. Web server designed to instantly construct genome scale protein networks using protein sequence data. Provides network visualization, analysis pages and solution for instant network modeling of newly sequenced species.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Tools for frameshift prediction and a frameshift database.

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• SciCrunch
• 13 years ago - by Anonymous

A tool for delimiting species on phylogenies and evolutionary placements.

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• SciCrunch
• 13 years ago - by Anonymous

A customizable web server for fast metagenomic analysis.

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• SciCrunch
• 13 years ago - by Anonymous

Ordination methods, diversity analysis and other functions for community and vegetation ecologists.

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• SciCrunch
• 13 years ago - by Anonymous

Delivers comprehensive shotgun metagenomics sequence analysis for accurate species frequency composition and protein searching.

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• SciCrunch
• 13 years ago - by Anonymous

An open source software package for comparison and analysis of microbial communities, primarily based on high-throughput amplicon sequencing data, but also supporting analysis of other types of data.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

An open-source software package for describing and comparing microbial communities. It incorporates the functionality of a number of computational tools, calculators, and visualization tools.

• Resource
• SciCrunch
• 13 years ago - by Anonymous