Curator Dashboard

A modular and configurable open source pipeline software, written in Perl, used for the rapid annotation of bacterial genome sequences.

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• SciCrunch
• 12 years ago - by Anonymous

A software tool to predict the conformational epitopes from 3D structures.

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• SciCrunch
• 12 years ago - by Anonymous

A large-scale whole genome simulation tool which generates large numbers of whole genomes with known sequence characteristics based on direct sampling of experimentally known or theorized variations.

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• SciCrunch
• 12 years ago - by Anonymous

A software tool to locate all copies of sequences in a reference sequence using read-pairs.

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• SciCrunch
• 12 years ago - by Anonymous

Software that uses structure-based chemical shift predictions to solve the backbone resonance assignment problem in protein NMR spectroscopy.

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• SciCrunch
• 12 years ago - by Anonymous

Free software tool for visualisation and processing of experimental and simulated nuclear magnetic resonance (NMR) spectra.

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• SciCrunch
• 12 years ago - by Anonymous

A highly flexible software toolbox for processing 1D and 2D NMR and EPR spectra under MATLAB, creating high-quality 1D, 2D or 3D plots from the spectra and printing them in every type of format that is supported by MATLAB.

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• SciCrunch
• 12 years ago - by Anonymous

A software tool for copy number variation (CNV) detection for whole-exome data from paired tumour/matched normal samples.

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• SciCrunch
• 12 years ago - by Anonymous

An open-source Python-based environment that provides a scriptable framework for efficient access to manufacturers'' proprietary data files via mzAPI.

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• SciCrunch
• 12 years ago - by Anonymous

An application framework mainly suited for developers working in the domain of bioinformatics for metabolomics and proteomics.

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• SciCrunch
• 12 years ago - by Anonymous

Software that enables rapid tool creation by providing a robust, pluggable development framework that simplifies and unifies data file access, and performs standard proteomics and LCMS dataset computations.

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• SciCrunch
• 12 years ago - by Anonymous

An open-source Java library that parses X!Tandem XML result files into an easily accessible and fully functional object model.

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• SciCrunch
• 12 years ago - by Anonymous

Software providing a user-friendly, lightweight and open-source graphical user interface for configuring and running the freely available OMSSA and X!Tandem search engines simultaneously.

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• SciCrunch
• 12 years ago - by Anonymous

A Java library to parse the msf files that constitute the output of Proteome Discoverer.

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• SciCrunch
• 12 years ago - by Anonymous

An open source software application and library written in Java that provides a uniform annotation of identified spectra stored in the PRIDE database.

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• SciCrunch
• 12 years ago - by Anonymous

Suite of software tools that allows users to convert search result files into PRIDE XML, generate mzTab skeleton files that can be used as a basis to submit quantitative and gel-based MS data, and post-process PRIDE XML files by filtering out contaminants and empty spectra.

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• SciCrunch
• 12 years ago - by Anonymous

A collection of Java application programming interfaces (APIs) to parse the most commonly used peak list and XML-based mass spectrometry (MS) data formats: DTA, MS2, MGF, PKL, mzXML, mzData, and mzML.

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• SciCrunch
• 12 years ago - by Anonymous

Software that allows fast and user-friendly verification of Mascot result files, as well as data quantification using isotopic labeling methods (SILAC/ICAT) or label free approaches (spectral counting, MS signal comparison).

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• SciCrunch
• 12 years ago - by Anonymous

A software tool for scientists working with stable isotopic labelling and high resolution liquid chromatography mass spectrometry.

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• SciCrunch
• 12 years ago - by Anonymous

A proteomics software tool for quantitatively analyzing large mass spectrometric datasets acquired from ICPL based proteomics experiments.

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• SciCrunch
• 12 years ago - by Anonymous