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A full-featured and flexible user-friendly open source software application, which is able to estimate toxic hazard by applying a decision tree approach.
Fast motif detection algorithm for subgraph size no more than 6.
A small Java molecular viewer/editor for chemical structures, stored in Modular Chemical Descriptor Language linear notation.
A software that facilitates and improves the design of chemical combinatorial libraries.
An interactive chemical molecule sketching tool, and molecular spreadsheet data entry application.
A connected-components based fast algorithm for network alignment.
Algorithm for the problem of globally aligning a pair of protein-protein interaction (PPI) networks.
Software using a reference-free method for detecting clusters of breakpoints from the chromosomal rearrangements.
A software which detects and analyses piRNA clusters based on quantifiable deviations from a hypothetical uniform distribution regarding the decisive piRNA cluster characteristics.
A metabolite identification software using tandem mass spectrometry and kernel methods.
An algorithm implemented in Matlab, Python and R that uses matrix multiplications to simultaneously calculate the Kruskal-Wallis test statistic for several millions of marker-trait combinations at once.
A Java-based proteomics cloud computing pipeline system for peptide and protein identifications.
Software providing a user-friendly and lightweight graphical user interface for running parallelized versions of the freely available de novo sequencing software PepNovo+, greatly simplifying the use of de novo sequencing in proteomics.
A software library containing code shared by many research projects, amongst others containing panels for visualizing spectra and chromatograms and objects for representing peptides and proteins etc. This library can be of use to other research groups doing computational proteomics.
Software that provides one-to-many alignments of reactions in a pair of metabolic pathways.
Software providing a complete, accurate and efficient solution for analysis of large scale base-resolution DNA methylation data, bisulfite sequencing or single molecule direct sequencing.
Software to calculate the number of significant SNPs in pathway divided by the number of SNPs in pathway.
A utility that uses a phylogenetic approach to refine orthology inferences made by graph-based (or other) methods.
A software package containing implementations of efficient algorithms for two common problems in phylogenetics: estimating DNA/protein sequence distances and reconstructing a phylogeny from a distance matrix.
THIS RESOURCE IS NO LONGER IN SERVICE.Documented on February 28,2023. Software program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models.