Curator Dashboard

Software that can be run from the command line for high throughput applications which can calculate all products from large lists of primers and probes compared to a large sequence database such as nt.

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• SciCrunch
• 12 years ago - by Anonymous

A user-friendly plant miRNA prediction tool.

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• SciCrunch
• 12 years ago - by Anonymous

A pedigree analysis software package that provides tools for error checking, mathematical analysis, report generation, pedigree simulation, and data visualization.

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• SciCrunch
• 12 years ago - by Anonymous

Software application that manages many PDF files of articles, whose information can be obtained by PubMed.

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• SciCrunch
• 12 years ago - by Anonymous

An efficient software tool to connect overlapping pair-end reads using k-mer frequencies.

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• SciCrunch
• 12 years ago - by Anonymous

A text mining software developed to find co-occurrence of biological entities (gene/protein terms) together with biointeractions and concepts term from customized dictionaries.

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• SciCrunch
• 12 years ago - by Anonymous

A GUI-based text annotation tool for creating and visualizing annotations.

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• SciCrunch
• 12 years ago - by Anonymous

A general-purpose text annotation tool that is integrated with the Prot����g���� knowledge representation system.

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• SciCrunch
• 12 years ago - by Anonymous

An open source annotation tool for the distributed creation of a large corpus.

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• SciCrunch
• 12 years ago - by Anonymous

A Matlab package extending the scope of established COBRA metabolic modelling.

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• SciCrunch
• 12 years ago - by Anonymous

Software Python package that provides support for basic COnstraint-Based Reconstruction and Analysis (COBRA) methods.

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• SciCrunch
• 12 years ago - by Anonymous

A fast and accurate algorithm which allows to find a global alignment of multiple protein-protein interaction networks.

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• SciCrunch
• 12 years ago - by Anonymous

A flexible open source protein similarity search software tool which provides a significant gain in speed compared to BLASTP at the price of controlled sensitivity loss.

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• SciCrunch
• 12 years ago - by Anonymous

A generic alignment format for storing read alignments against reference sequences, supporting short and long reads (up to 128 Mbp) produced by different sequencing platforms.

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• SciCrunch
• 12 years ago - by Anonymous

Software package for working with VCF files. Used to provide easily accessible methods for working with complex genetic variation data in the form of VCF files.Implements various utilities for processing Variant Call Format files, including validation, merging, comparing. Provides general Perl API.

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• SciCrunch
• 12 years ago - by Anonymous

Software that automates the finishing process using long sequence reads in a reference-guided assembly process.

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• SciCrunch
• 12 years ago - by Anonymous

Contigs from a draft assembly generated by a different assembler can be joined using PacBio long reads.

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• SciCrunch
• 12 years ago - by Anonymous

Open source (GPL) software providing an interactive, high quality molecular visualization system.

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• SciCrunch
• 12 years ago - by Anonymous

Software providing a graphical front end for computational chemistry programs.

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• SciCrunch
• 12 years ago - by Anonymous

A software tool to facilitate chemical similarity calculations.

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• SciCrunch
• 12 years ago - by Anonymous