Curator Dashboard

A software application which can analyze basic Western blot data and export them for use in spreadsheet programs. Users can create standardized or custom lab reports and can share them with colleagues. Various versions are available and are more compatible with Odyssey and Pearl families of imaging systems, Aerius, and the C‑DiGit Blot Scanner. Optional software keys are also available. Tutorials and support are available on the website.

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• SciCrunch
• 11 years ago - submitted by Gabrielle Pine

A COMMERCIAL SUPPLIER? of micro-CT scanners which reconstructs and visualizes data in 3D. A variety of reconstruction programs are provided by SkyScan, but all use cone-beam volumetric algorithms with automatic adaptation to particular scanning geometry in a micro-CT scanner. Reconstruction includes different options such as beam-hardening correction, alignment optimization, and ring artifact correction. Reconstructed slices can be saved in BMP, TIFF, JPG, PNG or numerical data format.

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• SciCrunch
• 11 years ago - by Anonymous

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• SciCrunch
• 11 years ago - by Anonymous

Viking is an open-source web-compliant application that allows connectomics visualization by converting datasets to web-optimized tiles, delivering volume transforms to client devices, and providing groups of users with connectome annotation tools and data simultaneously via conventional internet connections. Viking is an extensible tool for connectomics analysis and is generalizable to histomics applications.

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• SciCrunch
• 11 years ago - submitted by Robert Marc

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• SciCrunch
• 11 years ago - submitted by James Go

The WormGUIDES team is working to connect the developmental history of cells in the embryo with the final working assembly of parts in the nervous system. Our ability to make these connections hinges in part upon our development of new imaging (iSPIM) and image analysis (Starrynite) technologies for live embryos. However, it will also require a more comprehensive understanding of the mature ultrastructure of the nervous system, more than the previously published analyses of the nematode's neuroanatomy currently afford us. We have therefore completed our first draft of an EM-based digital model of the most complex neuroanatomical region in the worm, the adult nerve ring. And we have deployed a novel system to share the model and underlying data on the web, linking each cell to crucial information about its function, gene expression profile, and network of synapses and cell-cell interactions.

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• SciCrunch
• 11 years ago - by Anonymous

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

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• SciCrunch
• 11 years ago - submitted by Jamie Li

Adobe Illustrator CS6 is a vector graphics software which can be used to create digital graphics and illustrations. It is a new version of Adobe Illustrator.

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• SciCrunch
• 11 years ago - by Anonymous

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• SciCrunch
• 11 years ago - submitted by Jamie Li

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• SciCrunch
• 11 years ago - submitted by Jamie Li

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• SciCrunch
• 11 years ago - by Anonymous

Provides series of modules which enable functions of Vascular Modeling Toolkit in 3D Slicer. Functionality includes vessel enhancement filtering, level set segmentation, centerline computation, network extraction and branch splitting.VMTK is available through the extension manager for 3D Slicer from version 4.6.2. Main difference to Slicer3 version is that now all VMTK modules come as one extension bundle. This should enhance the installation experience for users.

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

Web tool to provide brain measurement services. Used for modeling the living human brain. Used to make quantitative measurements of the volume, shape, and location of specific neuroanatomical structures using given MRI brain scans.The final measurements result from automated analyses that are manually guided, inspected and certified by a neuroanatomical expert. In addition to raw measurements, graphical presentations, surface renderings, and movies (rotations and fly-throughs) can be provided along with shape and statistical analyses that are calculated with respect to continually growing reference data bases. Databases of neuroanatomically labeled MRI brain scans. Resource for neuroanatomical localization and identification: NeuAtlas.

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

Journals addressing functional and structural neuroimaging topics.

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

This module reduces Rician noise on nhdr/nrrd DWIs. It filters the image in the mean squared error sense using a Rician noise model. All estimations are performed as sample estimates in a "shaped neighborhood" defined by the weights extracted from the structural similarity of the voxels following the same idea as in the Non-Local Means filter.

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

An international symposium held initially to assess the new technology and innovation in the various established fields of genetics and imaging, and to facilitate the transdisciplinary fusion needed to optimize the development of the emerging field of Imaging Genetics

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

A spatial normalization and atlas construction toolkit designed to support the manipulation of diffusion-tensor images (DTI) with special cares taken to respect the tensorial nature of the data. It implements a registration algorithm that drives the alignment of white matter tracts by matching the orientation of the underlying fiber bundle at each voxel.

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

This project is meant for planning the NITRC Grantee meetings. A website for organizing meetings for the Neuroimaging Informatics Tools and Resources Clearinghouse, to facilitate participants meeting one another, and promote discussion of common interests and collaboration.

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

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• SciCrunch
• 11 years ago - submitted by Jamie Li