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A machine learning software package that can predict the precursor class of small RNAs present in a high-throughput RNA-sequencing dataset. In addition to classification, it also produces information about the features that are most important for discriminating different populations of small non-coding RNAs.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Japanese national research university located in Chikusa-ku, Nagoya. It was the seventh Imperial University in Japan, one of the first five Designated National University and selected as a Top Type university of Top Global University Project by the Japanese government.

• Organization
• SciCrunch
• 17 years ago - submitted by Stephen Larson

An algorithm to identify chromosomal breakpoints using massively parallel next generation sequence data.

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• SciCrunch
• 13 years ago - by Anonymous

Designed to identify CNVs between two genomes.

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• SciCrunch
• 13 years ago - by Anonymous

This package for R can detect copy number aberrations by measuring the depth of coverage obtained by massively parallel sequencing of the genome.

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• SciCrunch
• 13 years ago - by Anonymous

Copy number estimation from read depth information.

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• SciCrunch
• 13 years ago - by Anonymous

Prediction of copy number alterations and loss of heterozygosity using deep-sequencing data.

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• SciCrunch
• 13 years ago - by Anonymous

An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing.

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• SciCrunch
• 13 years ago - by Anonymous

A method for CNV detection that supplements the depth-of-coverage with paired-end mapping information, where matepairs mapping discordantly to the reference serve to indicate the presence of variation.

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• SciCrunch
• 13 years ago - by Anonymous

Identifies high quality CNVs based on the density of homozygous SNPs and the ratio of heterozygous SNP reads.

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• SciCrunch
• 13 years ago - by Anonymous

A program to detect copy number variants from short read sequence data.

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• SciCrunch
• 13 years ago - by Anonymous

A novel framework for the identification of CNA events that uses flowcell-to-flowcell variability to estimate the false positive rate and the depth of coverage to finalize copy number calls.

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• SciCrunch
• 13 years ago - by Anonymous

A Bioconductor package to estimate Copy Number Aberrations (CNA) in cancer samples.

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• SciCrunch
• 13 years ago - by Anonymous

A statistical method to detect CNV and LOH using depth-of-coverage and B-allele frequencies from mapped short sequence reads in exome sequencing data.

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• SciCrunch
• 13 years ago - by Anonymous

A tool for copy number variation (CNV) detection for targeted resequencing data such as those from whole-exome capture data.

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• SciCrunch
• 13 years ago - by Anonymous

A graphical, event-driven tool for CNA/AI-coupled analysis of exome sequencing reads.

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• SciCrunch
• 13 years ago - by Anonymous

Software application for the isolation and the type prediction of intra- and inter-chromosomal rearrangements from paired-end/mate-pair sequencing data provided by the high-throughput sequencing technologies. This tool aims to identify structural variations with both clustering and sliding-window strategies, and helping in their visualization at the genome scale. It is compatible with SOLiD and Illumina (>=1.3) reads.

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• SciCrunch
• 13 years ago - by Anonymous

Lille 2 University of Health and Law is located in Lille, Nord-Pas-de-Calais, France. University was established in 1562. It is accredited by Ministère de l'Enseignement supérieur et de la Recherche, France.

• Organization
• SciCrunch
• 17 years ago - submitted by Andrea Stagg

A computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data intended for haploid microbial genomes.

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• SciCrunch
• 13 years ago - by Anonymous

A complete whole-exome sequencing pipeline and provides easy access through interface to intermediate and final results.

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• SciCrunch
• 13 years ago - by Anonymous